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Search Results to Casey Stephen Greene

This is a "connection" page, showing the details of why an item matched the keywords from your search.

Search Results

Greene, Casey

One or more keywords matched the following items that are connected to Greene, Casey

Item Type	Name
Concept	Gene Expression Profiling
Concept	Gene Regulatory Networks
Concept	Epistasis, Genetic
Concept	Gene Expression
Concept	Genome, Bacterial
Concept	Polymorphism, Single Nucleotide
Concept	Histone Code
Concept	Genome, Human
Concept	Genes
Concept	Quantitative Trait Loci
Concept	Gene Library
Concept	Gene Expression Regulation, Neoplastic
Concept	Genetic Loci
Concept	Genome
Concept	Gene Frequency
Concept	Gene Silencing
Concept	Base Sequence
Concept	Alleles
Concept	Gene Expression Regulation, Bacterial
Concept	Gene Expression Regulation, Developmental
Concept	Genome, Fungal
Concept	Gene Expression Regulation
Concept	Genes, Neoplasm
Concept	Gene Ontology
Concept	Gene Editing
Concept	Transcriptome
Concept	Genome, Microbial
Concept	Clustered Regularly Interspaced Short Palindromic Repeats
Academic Article	Systems level analysis of systemic sclerosis shows a network of immune and profibrotic pathways connected with genetic polymorphisms.
Academic Article	Unsupervised Extraction of Stable Expression Signatures from Public Compendia with an Ensemble of Neural Networks.
Academic Article	Integrated phosphoproteomics and transcriptional classifiers reveal hidden RAS signaling dynamics in multiple myeloma.
Academic Article	Defining cell-type specificity at the transcriptional level in human disease.
Academic Article	The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.
Academic Article	Oncogenic Signaling Pathways in The Cancer Genome Atlas.
Academic Article	A machine learning classifier trained on cancer transcriptomes detects NF1 inactivation signal in glioblastoma.
Academic Article	Failure to replicate a genetic association may provide important clues about genetic architecture.
Academic Article	New Drosophila Long-Term Memory Genes Revealed by Assessing Computational Function Prediction Methods.
Academic Article	Metabolic pathways and immunometabolism in rare kidney diseases.
Academic Article	Reproducibility of computational workflows is automated using continuous analysis.
Academic Article	LTR retrotransposon-gene associations in Drosophila melanogaster.
Academic Article	Integrative Analysis Identifies Candidate Tumor Microenvironment and Intracellular Signaling Pathways that Define Tumor Heterogeneity in NF1.
Academic Article	Spatially uniform relieff (SURF) for computationally-efficient filtering of gene-gene interactions.
Academic Article	ADAGE signature analysis: differential expression analysis with data-defined gene sets.
Academic Article	An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
Academic Article	Functional network community detection can disaggregate and filter multiple underlying pathways in enrichment analyses.
Academic Article	A Multimodal Strategy Used by a Large c-di-GMP Network.
Academic Article	ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa Gene Expression Data with Denoising Autoencoders Illuminates Microbe-Host Interactions.
Academic Article	IMP: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks.
Academic Article	Comprehensive Cross-Population Analysis of High-Grade Serous Ovarian Cancer Supports No More Than Three Subtypes.
Academic Article	Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations.
Academic Article	Biologically Informed Neural Networks Predict Drug Responses.
Academic Article	Targeted exploration and analysis of large cross-platform human transcriptomic compendia.
Academic Article	Big data bioinformatics.
Academic Article	Genetic Association-Guided Analysis of Gene Networks for the Study of Complex Traits.
Academic Article	Development and Validation of the Gene Expression Predictor of High-grade Serous Ovarian Carcinoma Molecular SubTYPE (PrOTYPE).
Academic Article	Implicating candidate genes at GWAS signals by leveraging topologically associating domains.
Academic Article	Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas.
Academic Article	PILGRM: an interactive data-driven discovery platform for expert biologists.
Academic Article	Machine Learning Analysis Identifies Drosophila Grunge/Atrophin as an Important Learning and Memory Gene Required for Memory Retention and Social Learning.
Academic Article	MultiPLIER: A Transfer Learning Framework for Transcriptomics Reveals Systemic Features of Rare Disease.
Academic Article	Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas.
Academic Article	Parameter tuning is a key part of dimensionality reduction via deep variational autoencoders for single cell RNA transcriptomics.
Academic Article	A novel multi-network approach reveals tissue-specific cellular modulators of fibrosis in systemic sclerosis.
Academic Article	Functional knowledge transfer for high-accuracy prediction of under-studied biological processes.
Academic Article	Leveraging global gene expression patterns to predict expression of unmeasured genes.
Academic Article	Understanding multicellular function and disease with human tissue-specific networks.
Academic Article	Extracting a biologically relevant latent space from cancer transcriptomes with variational autoencoders.
Academic Article	The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution.
Academic Article	Genome-wide association study implicates novel loci and reveals candidate effector genes for longitudinal pediatric bone accrual.
Academic Article	Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design.
Academic Article	Parameterized algorithms for identifying gene co-expression modules via weighted clique decomposition.
Academic Article	SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses.
Academic Article	Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia.
Academic Article	Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously.
Academic Article	The effect of non-linear signal in classification problems using gene expression.
Academic Article	Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14.
Academic Article	MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes.
Academic Article	Analysis of Pseudomonas aeruginosa transcription in an ex vivo cystic fibrosis sputum model identifies metal restriction as a gene expression stimulus.
Academic Article	Projecting genetic associations through gene expression patterns highlights disease etiology and drug mechanisms.
Academic Article	Performance of computational algorithms to deconvolve heterogeneous bulk ovarian tumor tissue depends on experimental factors.
Academic Article	Molecular subtypes of high-grade serous ovarian cancer across racial groups and gene expression platforms.

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