 Gene Regulatory Networks
"Gene Regulatory Networks" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus,
MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure,
which enables searching at various levels of specificity.
Interacting DNA-encoded regulatory subsystems in the GENOME that coordinate input from activator and repressor TRANSCRIPTION FACTORS during development, cell differentiation, or in response to environmental cues. The networks function to ultimately specify expression of particular sets of GENES for specific conditions, times, or locations.
| Descriptor ID |
D053263
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| MeSH Number(s) |
G05.360.080.689.360
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| Concept/Terms |
Gene Regulatory Networks- Gene Regulatory Networks
- Gene Regulatory Network
- Network, Gene Regulatory
- Networks, Gene Regulatory
- Regulatory Network, Gene
- Regulatory Networks, Gene
- Gene Networks
- Gene Network
- Network, Gene
- Networks, Gene
- Transcriptional Networks
- Network, Transcriptional
- Networks, Transcriptional
- Transcriptional Network
Gene Circuits- Gene Circuits
- Circuit, Gene
- Circuits, Gene
- Gene Circuit
Gene Modules- Gene Modules
- Module, Gene
- Modules, Gene
- Gene Module
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Below are MeSH descriptors whose meaning is more general than "Gene Regulatory Networks".
Below are MeSH descriptors whose meaning is more specific than "Gene Regulatory Networks".
This graph shows the total number of publications written about "Gene Regulatory Networks" by people in this website by year, and whether "Gene Regulatory Networks" was a major or minor topic of these publications.
To see the data from this visualization as text, click here.
| Year | Major Topic | Minor Topic | Total |
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| 2007 | 1 | 4 | 5 | | 2008 | 1 | 1 | 2 | | 2009 | 5 | 2 | 7 | | 2010 | 0 | 7 | 7 | | 2011 | 1 | 2 | 3 | | 2012 | 5 | 4 | 9 | | 2013 | 6 | 9 | 15 | | 2014 | 3 | 11 | 14 | | 2015 | 5 | 1 | 6 | | 2016 | 8 | 9 | 17 | | 2017 | 7 | 14 | 21 | | 2018 | 6 | 11 | 17 | | 2019 | 5 | 8 | 13 | | 2020 | 7 | 9 | 16 | | 2021 | 3 | 6 | 9 | | 2022 | 1 | 3 | 4 | | 2023 | 0 | 8 | 8 | | 2024 | 4 | 6 | 10 | | 2025 | 3 | 3 | 6 |
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Below are the most recent publications written about "Gene Regulatory Networks" by people in Profiles.
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Collins-McMillen D, De Oliveira Pessoa D, Zarrella K, Parkins CJ, Daily M, McKinzey DR, Moorman NJ, Kamil JP, Caposio P, Padi M, Goodrum FD. Viral and host network analysis of the human cytomegalovirus transcriptome in latency. Proc Natl Acad Sci U S A. 2025 Jun 03; 122(22):e2416114122.
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Liu W, Pratte KA, Castaldi PJ, Hersh C, Bowler RP, Banaei-Kashani F, Kechris KJ. A generalized higher-order correlation analysis framework for multi-omics network inference. PLoS Comput Biol. 2025 Apr; 21(4):e1011842.
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Jones T, Sigauke RF, Sanford L, Taatjes DJ, Allen MA, Dowell RD. TF Profiler: a transcription factor inference method that broadly measures transcription factor activity and identifies mechanistically distinct networks. Genome Biol. 2025 Apr 09; 26(1):92.
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Jones T, Feng J, Luyties O, Cozzolino K, Sanford L, Rimel JK, Ebmeier CC, Shelby GS, Watts LP, Rodino J, Rajagopal N, Hu S, Brennan F, Maas ZL, Alnemy S, Richter WF, Koh AF, Cronin NB, Madduri A, Das J, Cooper E, Hamman KB, Carulli JP, Allen MA, Spencer S, Kotecha A, Marineau JJ, Greber BJ, Dowell RD, Taatjes DJ. TFIIH kinase CDK7 drives cell proliferation through a common core transcription factor network. Sci Adv. 2025 Feb 28; 11(9):eadr9660.
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Walters K, Baldwin A, Liu Z, Larsen M, Mukherjee N, Kumar TR. Identification of FSH-regulated and estrous stage-specific transcriptional networks in mouse ovaries. Proc Natl Acad Sci U S A. 2025 Feb 18; 122(7):e2411977122.
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Liu H, Abedini A, Ha E, Ma Z, Sheng X, Dumoulin B, Qiu C, Aranyi T, Li S, Dittrich N, Chen HC, Tao R, Tarng DC, Hsieh FJ, Chen SA, Yang SF, Lee MY, Kwok PY, Wu JY, Chen CH, Khan A, Limdi NA, Wei WQ, Walunas TL, Karlson EW, Kenny EE, Luo Y, Kottyan L, Connolly JJ, Jarvik GP, Weng C, Shang N, Cole JB, Mercader JM, Mandla R, Majarian TD, Florez JC, Haas ME, Lotta LA, Drivas TG, Vy HMT, Nadkarni GN, Wiley LK, Wilson MP, Gignoux CR, Rasheed H, Thomas LF, ?svold BO, Brumpton BM, Hallan SI, Hveem K, Zheng J, Hellwege JN, Zawistowski M, Z?llner S, Franceschini N, Hu H, Zhou J, Kiryluk K, Ritchie MD, Palmer M, Edwards TL, Voight BF, Hung AM, Susztak K. Kidney multiome-based genetic scorecard reveals convergent coding and regulatory variants. Science. 2025 Feb 07; 387(6734):eadp4753.
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Sastry AV, Yuan Y, Poudel S, Rychel K, Yoo R, Lamoureux CR, Li G, Burrows JT, Chauhan S, Haiman ZB, Al Bulushi T, Seif Y, Palsson BO, Zielinski DC. iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia. PLoS Comput Biol. 2024 Oct; 20(10):e1012546.
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d'Escamard V, Kadian-Dodov D, Ma L, Lu S, King A, Xu Y, Peng S, V Gangula B, Zhou Y, Thomas A, Michelis KC, Bander E, Bouchareb R, Georges A, Nomura-Kitabayashi A, Wiener RJ, Costa KD, Chepurko E, Chepurko V, Fava M, Barwari T, Anyanwu A, Filsoufi F, Florman S, Bouatia-Naji N, Schmidt LE, Mayr M, Katz MG, Hao K, Weiser-Evans MCM, Bj?rkegren JLM, Olin JW, Kovacic JC. Integrative gene regulatory network analysis discloses key driver genes of fibromuscular dysplasia. Nat Cardiovasc Res. 2024 Sep; 3(9):1098-1122.
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Pividori M, Ritchie MD, Milone DH, Greene CS. An efficient, not-only-linear correlation coefficient based on clustering. Cell Syst. 2024 Sep 18; 15(9):854-868.e3.
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Liu W, Vu T, R Konigsberg I, A Pratte K, Zhuang Y, Kechris KJ. Smccnet 2.0: a comprehensive tool for multi-omics network inference with shiny visualization. BMC Bioinformatics. 2024 Aug 24; 25(1):276.
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