 Molecular Dynamics Simulation
"Molecular Dynamics Simulation" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus,
MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure,
which enables searching at various levels of specificity.
A computer simulation developed to study the motion of molecules over a period of time.
| Descriptor ID |
D056004
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| MeSH Number(s) |
E05.599.595.500 G02.111.570.895 L01.224.160.500
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| Concept/Terms |
Molecular Dynamics Simulation- Molecular Dynamics Simulation
- Dynamics Simulation, Molecular
- Dynamics Simulations, Molecular
- Simulation, Molecular Dynamics
- Simulations, Molecular Dynamics
- Molecular Dynamics Simulations
Molecular Dynamics- Molecular Dynamics
- Dynamic, Molecular
- Dynamics, Molecular
- Molecular Dynamic
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Below are MeSH descriptors whose meaning is more general than "Molecular Dynamics Simulation".
Below are MeSH descriptors whose meaning is more specific than "Molecular Dynamics Simulation".
This graph shows the total number of publications written about "Molecular Dynamics Simulation" by people in this website by year, and whether "Molecular Dynamics Simulation" was a major or minor topic of these publications.
To see the data from this visualization as text, click here.
| Year | Major Topic | Minor Topic | Total |
|---|
| 2010 | 2 | 6 | 8 | | 2011 | 6 | 6 | 12 | | 2012 | 9 | 5 | 14 | | 2013 | 6 | 12 | 18 | | 2014 | 3 | 14 | 17 | | 2015 | 5 | 11 | 16 | | 2016 | 7 | 12 | 19 | | 2017 | 6 | 7 | 13 | | 2018 | 6 | 9 | 15 | | 2019 | 2 | 14 | 16 | | 2020 | 1 | 8 | 9 | | 2021 | 1 | 9 | 10 | | 2022 | 4 | 4 | 8 | | 2023 | 2 | 2 | 4 | | 2024 | 4 | 3 | 7 | | 2025 | 0 | 4 | 4 |
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Below are the most recent publications written about "Molecular Dynamics Simulation" by people in Profiles.
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Schlinsog M, Sattasathuchana T, Xu P, Guidez EB, Gilson MK, Potter MJ, Gordon MS, Webb SP. Computation of Protein-Ligand Binding Free Energies with a Quantum Mechanics-Based Mining Minima Algorithm. J Chem Theory Comput. 2025 Apr 22; 21(8):4236-4265.
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Lietzke EE, Saeb D, Aldrich EC, Bruce KD, Sprenger KG. Synergistic reduction in interfacial flexibility of TREM2R47H and ApoE4 may underlie AD pathology. Alzheimers Dement. 2025 Apr; 21(4):e70120.
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Elhanafy E, Akbari Ahangar A, Roth R, Gamal El-Din TM, Bankston JR, Li J. The differential impacts of equivalent gating-charge mutations in voltage-gated sodium channels. J Gen Physiol. 2025 Mar 03; 157(2).
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Singh S, Arya G, Mishra R, Singla S, Pratap A, Upadhayay K, Sharma M, Chaba R. Molecular mechanisms underlying allosteric behavior of Escherichia coli DgoR, a GntR/FadR family transcriptional regulator. Nucleic Acids Res. 2025 Jan 07; 53(1).
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Good MR, Fern?ndez-Quintero ML, Ji W, Rodriguez AJ, Han J, Ward AB, Guthmiller JJ. A single mutation in dairy cow-associated H5N1 viruses increases receptor binding breadth. Nat Commun. 2024 12 30; 15(1):10768.
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Bandarupalli R, Roth R, Klipp RC, Bankston JR, Li J. Molecular Insights into Single-Chain Lipid Modulation of Acid-Sensing Ion Channel 3. J Phys Chem B. 2024 Dec 26; 128(51):12685-12697.
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Leonard AC, Friedman AJ, Chayer R, Petersen BM, Woojuh J, Xing Z, Cutler SR, Kaar JL, Shirts MR, Whitehead TA. Rationalizing Diverse Binding Mechanisms to the Same Protein Fold: Insights for Ligand Recognition and Biosensor Design. ACS Chem Biol. 2024 08 16; 19(8):1757-1772.
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Briganti L, Manzine LR, de Mello Capetti CC, de Ara?jo EA, de Oliveira Arnoldi Pellegrini V, Guimaraes FEG, de Oliveira Neto M, Polikarpov I. Unravelling biochemical and structural features of Bacillus licheniformis GH5 mannanase using site-directed mutagenesis and high-resolution protein crystallography studies. Int J Biol Macromol. 2024 Aug; 274(Pt 2):133182.
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Vugmeyster L, Ostrovsky D, Fu R. Carbon-detected deuterium solid-state NMR rotating frame relaxation measurements for protein methyl groups under magic angle spinning. Solid State Nucl Magn Reson. 2024 Apr; 130:101922.
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Mukherjee S, Douglas N, Jimenez R. Influence of Fluorescence Lifetime Selections and Conformational Flexibility on Brightness of FusionRed Variants. J Phys Chem Lett. 2024 Feb 15; 15(6):1644-1651.
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