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Gregg Tyler Beckham

TitleProfessor Adjoint
InstitutionUniversity of Colorado Boulder
DepartmentChemical & Biological Engin

    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Amendola CR, Cordell WT, Kneucker CM, Szostkiewicz CJ, Ingraham MA, Monninger M, Wilton R, Pfleger BF, Salvach?a D, Johnson CW, Beckham GT. Comparison of wild-type KT2440 and genome-reduced EM42 Pseudomonas putida strains for muconate production from aromatic compounds and glucose. Metab Eng. 2024 Jan; 81:88-99. PMID: 38000549.
      View in: PubMed
    2. Cywar RM, Ling C, Clarke RW, Kim DH, Kneucker CM, Salvach?a D, Addison B, Hesse SA, Takacs CJ, Xu S, Demirtas MU, Woodworth SP, Rorrer NA, Johnson CW, Tassone CJ, Allen RD, Chen EY, Beckham GT. Elastomeric vitrimers from designer polyhydroxyalkanoates with recyclability and biodegradability. Sci Adv. 2023 11 24; 9(47):eadi1735. PMID: 37992173.
      View in: PubMed
    3. Gu NX, Palumbo CT, Bleem AC, Sullivan KP, Haugen SJ, Woodworth SP, Ramirez KJ, Kenny JK, Stanley LD, Katahira R, Stahl SS, Beckham GT. Autoxidation Catalysis for Carbon-Carbon Bond Cleavage in Lignin. ACS Cent Sci. 2023 Dec 27; 9(12):2277-2285. PMID: 38161372.
      View in: PubMed
    4. DiPucchio RC, Stevenson KR, Lahive CW, Michener WE, Beckham GT. Base-Mediated Depolymerization of Amine-Cured Epoxy Resins. ACS Sustain Chem Eng. 2023 Dec 04; 11(48):16946-16954. PMID: 38076616.
      View in: PubMed
    5. Wilson AN, St John PC, Marin DH, Hoyt CB, Rognerud EG, Nimlos MR, Cywar RM, Rorrer NA, Shebek KM, Broadbelt LJ, Beckham GT, Crowley MF. PolyID: Artificial Intelligence for Discovering Performance-Advantaged and Sustainable Polymers. Macromolecules. 2023 Nov 14; 56(21):8547-8557. PMID: 38024155.
      View in: PubMed
    6. Werner AZ, Cordell WT, Lahive CW, Klein BC, Singer CA, Tan ECD, Ingraham MA, Ramirez KJ, Kim DH, Pedersen JN, Johnson CW, Pfleger BF, Beckham GT, Salvach?a D. Lignin conversion to ?-ketoadipic acid by Pseudomonas putida via metabolic engineering and bioprocess development. Sci Adv. 2023 09 08; 9(36):eadj0053. PMID: 37672573.
      View in: PubMed
    7. Bleem A, Kato R, Kellermyer ZA, Katahira R, Miyamoto M, Niinuma K, Kamimura N, Masai E, Beckham GT. Multiplexed fitness profiling by RB-TnSeq elucidates pathways for lignin-related aromatic catabolism in Sphingobium sp. SYK-6. Cell Rep. 2023 08 29; 42(8):112847. PMID: 37515767.
      View in: PubMed
    8. Kato R, Maekawa K, Kobayashi S, Hishiyama S, Katahira R, Nambo M, Higuchi Y, Kuatsjah E, Beckham GT, Kamimura N, Masai E. Stereoinversion via Alcohol Dehydrogenases Enables Complete Catabolism of ?-1-Type Lignin-Derived Aromatic Isomers. Appl Environ Microbiol. 2023 06 28; 89(6):e0017123. PMID: 37184397.
      View in: PubMed
    9. Borchert AJ, Bleem A, Beckham GT. RB-TnSeq identifies genetic targets for improved tolerance of Pseudomonas putida towards compounds relevant to lignin conversion. Metab Eng. 2023 05; 77:208-218. PMID: 37059293.
      View in: PubMed
    10. Avilan L, Lichtenstein BR, K?nig G, Zahn M, Allen MD, Oliveira L, Clark M, Bemmer V, Graham R, Austin HP, Dominick G, Johnson CW, Beckham GT, McGeehan JE, Pickford AR. Concentration-Dependent Inhibition of Mesophilic PETases on Poly(ethylene terephthalate) Can Be Eliminated by Enzyme Engineering. ChemSusChem. 2023 Apr 21; 16(8):e202202277. PMID: 36811288.
      View in: PubMed
    11. McNaught KJ, Kuatsjah E, Zahn M, Prates ?T, Shao H, Bentley GJ, Pickford AR, Gruber JN, Hestmark KV, Jacobson DA, Poirier BC, Ling C, San Marchi M, Michener WE, Nicora CD, Sanders JN, Szostkiewicz CJ, Velickovic D, Zhou M, Munoz N, Kim YM, Magnuson JK, Burnum-Johnson KE, Houk KN, McGeehan JE, Johnson CW, Beckham GT. Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440. Metab Eng. 2023 03; 76:193-203. PMID: 36796578.
      View in: PubMed
    12. Su ZM, Twilton J, Hoyt CB, Wang F, Stanley L, Mayes HB, Kang K, Weix DJ, Beckham GT, Stahl SS. Ni- and Ni/Pd-Catalyzed Reductive Coupling of Lignin-Derived Aromatics to Access Biobased Plasticizers. ACS Cent Sci. 2023 Feb 22; 9(2):159-165. PMID: 36844489.
      View in: PubMed
    13. Kuatsjah E, Zahn M, Chen X, Kato R, Hinchen DJ, Konev MO, Katahira R, Orr C, Wagner A, Zou Y, Haugen SJ, Ramirez KJ, Michener JK, Pickford AR, Kamimura N, Masai E, Houk KN, McGeehan JE, Beckham GT. Biochemical and structural characterization of a sphingomonad diarylpropane lyase for cofactorless deformylation. Proc Natl Acad Sci U S A. 2023 01 24; 120(4):e2212246120. PMID: 36652470.
      View in: PubMed
    14. Martin HG, Radivojevic T, Zucker J, Bouchard K, Sustarich J, Peisert S, Arnold D, Hillson N, Babnigg G, Marti JM, Mungall CJ, Beckham GT, Waldburger L, Carothers J, Sundaram S, Agarwal D, Simmons BA, Backman T, Banerjee D, Tanjore D, Ramakrishnan L, Singh A. Perspectives for self-driving labs in synthetic biology. Curr Opin Biotechnol. 2023 02; 79:102881. PMID: 36603501.
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    15. Uchiyama T, Uchihashi T, Ishida T, Nakamura A, Vermaas JV, Crowley MF, Samejima M, Beckham GT, Igarashi K. Lytic polysaccharide monooxygenase increases cellobiohydrolases activity by promoting decrystallization of cellulose surface. Sci Adv. 2022 Dec 23; 8(51):eade5155. PMID: 36563138.
      View in: PubMed
    16. Erickson E, Gado JE, Avil?n L, Bratti F, Brizendine RK, Cox PA, Gill R, Graham R, Kim DJ, K?nig G, Michener WE, Poudel S, Ramirez KJ, Shakespeare TJ, Zahn M, Boyd ES, Payne CM, DuBois JL, Pickford AR, Beckham GT, McGeehan JE. Sourcing thermotolerant poly(ethylene terephthalate) hydrolase scaffolds from natural diversity. Nat Commun. 2022 Dec 21; 13(1):7850. PMID: 36543766.
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    17. Vermaas JV, Crowley MF, Beckham GT. Molecular simulation of lignin-related aromatic compound permeation through gram-negative bacterial outer membranes. J Biol Chem. 2022 Oct 21; 298(12):102627. PMID: 36273587.
      View in: PubMed
    18. Sullivan KP, Werner AZ, Ramirez KJ, Ellis LD, Bussard JR, Black BA, Brandner DG, Bratti F, Buss BL, Dong X, Haugen SJ, Ingraham MA, Konev MO, Michener WE, Miscall J, Pardo I, Woodworth SP, Guss AM, Rom?n-Leshkov Y, Stahl SS, Beckham GT. Mixed plastics waste valorization through tandem chemical oxidation and biological funneling. Science. 2022 10 14; 378(6616):207-211. PMID: 36227984.
      View in: PubMed
    19. Dong X, Mayes HB, Morreel K, Katahira R, Li Y, Ralph J, Black BA, Beckham GT. Energy-Resolved Mass Spectrometry as a Tool for Identification of Lignin Depolymerization Products. ChemSusChem. 2022 Oct 05; e202201441. PMID: 36197743.
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    20. Zichittella G, Ebrahim AM, Zhu J, Brenner AE, Drake G, Beckham GT, Bare SR, Rorrer JE, Rom?n-Leshkov Y. Hydrogenolysis of Polyethylene and Polypropylene into Propane over Cobalt-Based Catalysts. JACS Au. 2022 Oct 24; 2(10):2259-2268. PMID: 36311830.
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    21. Cywar RM, Beckham GT. Producing performance-advantaged bioplastics. Nat Chem. 2022 09; 14(9):967-969. PMID: 36028623.
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    22. Fenster JA, Werner AZ, Tay JW, Gillen M, Schirokauer L, Hill NC, Watson A, Ramirez KJ, Johnson CW, Beckham GT, Cameron JC, Eckert CA. Dynamic and single cell characterization of a CRISPR-interference toolset in Pseudomonas putida KT2440 for ?-ketoadipate production from p-coumarate. Metab Eng Commun. 2022 Dec; 15:e00204. PMID: 36093381.
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    23. Ling C, Peabody GL, Salvach?a D, Kim YM, Kneucker CM, Calvey CH, Monninger MA, Munoz NM, Poirier BC, Ramirez KJ, St John PC, Woodworth SP, Magnuson JK, Burnum-Johnson KE, Guss AM, Johnson CW, Beckham GT. Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering. Nat Commun. 2022 08 22; 13(1):4925. PMID: 35995792.
      View in: PubMed
    24. Borchert AJ, Bleem A, Beckham GT. Experimental and Analytical Approaches for Improving the Resolution of Randomly Barcoded Transposon Insertion Sequencing (RB-TnSeq) Studies. ACS Synth Biol. 2022 06 17; 11(6):2015-2021. PMID: 35657709.
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    25. Lim HG, Rychel K, Sastry AV, Bentley GJ, Mueller J, Schindel HS, Larsen PE, Laible PD, Guss AM, Niu W, Johnson CW, Beckham GT, Feist AM, Palsson BO. Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network. Metab Eng. 2022 07; 72:297-310. PMID: 35489688.
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    26. Nicholson SR, Rorrer JE, Singh A, Konev MO, Rorrer NA, Carpenter AC, Jacobsen AJ, Rom?n-Leshkov Y, Beckham GT. The Critical Role of Process Analysis in Chemical Recycling and Upcycling of Waste Plastics. Annu Rev Chem Biomol Eng. 2022 06 10; 13:301-324. PMID: 35320697.
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    27. Kincannon WM, Zahn M, Clare R, Lusty Beech J, Romberg A, Larson J, Bothner B, Beckham GT, McGeehan JE, DuBois JL. Biochemical and structural characterization of an aromatic ring-hydroxylating dioxygenase for terephthalic acid catabolism. Proc Natl Acad Sci U S A. 2022 03 29; 119(13):e2121426119. PMID: 35312352.
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    28. Cywar RM, Rorrer NA, Mayes HB, Maurya AK, Tassone CJ, Beckham GT, Chen EY. Redesigned Hybrid Nylons with Optical Clarity and Chemical Recyclability. J Am Chem Soc. 2022 03 30; 144(12):5366-5376. PMID: 35290039.
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    29. Lusty Beech J, Clare R, Kincannon WM, Erickson E, McGeehan JE, Beckham GT, DuBois JL. A flexible kinetic assay efficiently sorts prospective biocatalysts for PET plastic subunit hydrolysis. RSC Adv. 2022 Mar 08; 12(13):8119-8130. PMID: 35424733.
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    30. Bentley GJ, Narayanan N, Jha RK, Salvach?a D, Elmore JR, Peabody GL, Black BA, Ramirez K, De Capite A, Michener WE, Werner AZ, Klingeman DM, Schindel HS, Nelson R, Foust L, Guss AM, Dale T, Johnson CW, Beckham GT. Corrigendum to "Engineering glucose metabolism for enhanced muconic acid production in Pseudomonas putida KT2440" [Metab. Eng. 59 (2020) 64-75]. Metab Eng. 2022 07; 72:66-67. PMID: 35240296.
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    31. Yan B, Shi C, Beckham GT, Chen EY, Rom?n-Leshkov Y. Electrochemical Activation of C-C Bonds through Mediated Hydrogen Atom Transfer Reactions. ChemSusChem. 2022 Mar 22; 15(6):e202102317. PMID: 34927368.
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    32. Kuatsjah E, Johnson CW, Salvach?a D, Werner AZ, Zahn M, Szostkiewicz CJ, Singer CA, Dominick G, Okekeogbu I, Haugen SJ, Woodworth SP, Ramirez KJ, Giannone RJ, Hettich RL, McGeehan JE, Beckham GT. Debottlenecking 4-hydroxybenzoate hydroxylation in Pseudomonas putida KT2440 improves muconate productivity from p-coumarate. Metab Eng. 2022 03; 70:31-42. PMID: 34982998.
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    33. Erickson E, Shakespeare TJ, Bratti F, Buss BL, Graham R, Hawkins MA, K?nig G, Michener WE, Miscall J, Ramirez KJ, Rorrer NA, Zahn M, Pickford AR, McGeehan JE, Beckham GT. Comparative Performance of PETase as a Function of Reaction Conditions, Substrate Properties, and Product Accumulation. ChemSusChem. 2022 Jan 10; 15(1):e202102517. PMID: 34914860.
      View in: PubMed
    34. Erickson E, Shakespeare TJ, Bratti F, Buss BL, Graham R, Hawkins MA, K?nig G, Michener WE, Miscall J, Ramirez KJ, Rorrer NA, Zahn M, Pickford AR, McGeehan JE, Beckham GT. Comparative Performance of PETase as a Function of Reaction Conditions, Substrate Properties, and Product Accumulation. ChemSusChem. 2022 Jan 10; 15(1):e202101932. PMID: 34587366.
      View in: PubMed
    35. Henson WR, Meyers AW, Jayakody LN, DeCapite A, Black BA, Michener WE, Johnson CW, Beckham GT. Biological upgrading of pyrolysis-derived wastewater: Engineering Pseudomonas putida for alkylphenol, furfural, and acetone catabolism and (methyl)muconic acid production. Metab Eng. 2021 11; 68:14-25. PMID: 34438073.
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    36. Werner AZ, Clare R, Mand TD, Pardo I, Ramirez KJ, Haugen SJ, Bratti F, Dexter GN, Elmore JR, Huenemann JD, Peabody GL, Johnson CW, Rorrer NA, Salvach?a D, Guss AM, Beckham GT. Tandem chemical deconstruction and biological upcycling of poly(ethylene terephthalate) to ?-ketoadipic acid by Pseudomonas putida KT2440. Metab Eng. 2021 09; 67:250-261. PMID: 34265401.
      View in: PubMed
    37. Bartling AW, Stone ML, Hanes RJ, Bhatt A, Zhang Y, Biddy MJ, Davis R, Kruger JS, Thornburg NE, Luterbacher JS, Rinaldi R, Samec JSM, Sels BF, Rom?n-Leshkov Y, Beckham GT. Techno-economic analysis and life cycle assessment of a biorefinery utilizing reductive catalytic fractionation. Energy Environ Sci. 2021 Aug 11; 14(8):4147-4168. PMID: 36324336.
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    38. Borchert AJ, Henson WR, Beckham GT. Challenges and opportunities in biological funneling of heterogeneous and toxic substrates beyond lignin. Curr Opin Biotechnol. 2022 02; 73:1-13. PMID: 34242853.
      View in: PubMed
    39. Gado JE, Harrison BE, Sandgren M, St?hlberg J, Beckham GT, Payne CM. Machine learning reveals sequence-function relationships in family 7 glycoside hydrolases. J Biol Chem. 2021 08; 297(2):100931. PMID: 34216620.
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    40. Presley GN, Werner AZ, Katahira R, Garcia DC, Haugen SJ, Ramirez KJ, Giannone RJ, Beckham GT, Michener JK. Corrigendum to "Pathway discovery and engineering for cleavage of a ?-1 lignin-derived biaryl compound" [Metab. Eng. 65 (2021) 1-10]. Metab Eng. 2021 Jul; 66:328-329. PMID: 34059442.
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    41. Kuatsjah E, Chan ACK, Katahira R, Haugen SJ, Beckham GT, Murphy MEP, Eltis LD. Structural and functional analysis of lignostilbene dioxygenases from Sphingobium sp. SYK-6. J Biol Chem. 2021 Jan-Jun; 296:100758. PMID: 33965373.
      View in: PubMed
    42. Elmore JR, Dexter GN, Salvach?a D, Martinez-Baird J, Hatmaker EA, Huenemann JD, Klingeman DM, Peabody GL, Peterson DJ, Singer C, Beckham GT, Guss AM. Production of itaconic acid from alkali pretreated lignin by dynamic two stage bioconversion. Nat Commun. 2021 04 15; 12(1):2261. PMID: 33859194.
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    43. Notonier S, Werner AZ, Kuatsjah E, Dumalo L, Abraham PE, Hatmaker EA, Hoyt CB, Amore A, Ramirez KJ, Woodworth SP, Klingeman DM, Giannone RJ, Guss AM, Hettich RL, Eltis LD, Johnson CW, Beckham GT. Metabolism of syringyl lignin-derived compounds in Pseudomonas putida enables convergent production of 2-pyrone-4,6-dicarboxylic acid. Metab Eng. 2021 05; 65:111-122. PMID: 33741529.
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    44. Presley GN, Werner AZ, Katahira R, Garcia DC, Haugen SJ, Ramirez KJ, Giannone RJ, Beckham GT, Michener JK. Pathway discovery and engineering for cleavage of a ?-1 lignin-derived biaryl compound. Metab Eng. 2021 05; 65:1-10. PMID: 33636323.
      View in: PubMed
    45. Silveira RL, Knott BC, Pereira CS, Crowley MF, Skaf MS, Beckham GT. Transition Path Sampling Study of the Feruloyl Esterase Mechanism. J Phys Chem B. 2021 03 04; 125(8):2018-2030. PMID: 33616402.
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    46. Wada A, Prates ?T, Hirano R, Werner AZ, Kamimura N, Jacobson DA, Beckham GT, Masai E. Characterization of aromatic acid/proton symporters in Pseudomonas putida KT2440 toward efficient microbial conversion of lignin-related aromatics. Metab Eng. 2021 03; 64:167-179. PMID: 33549838.
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    47. Ellis ES, Hinchen DJ, Bleem A, Bu L, Mallinson SJB, Allen MD, Streit BR, Machovina MM, Doolin QV, Michener WE, Johnson CW, Knott BC, Beckham GT, McGeehan JE, DuBois JL. Engineering a Cytochrome P450 for Demethylation of Lignin-Derived Aromatic Aldehydes. JACS Au. 2021 Mar 22; 1(3):252-261. PMID: 34467290.
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    48. Franden MA, Jayakody LN, Li WJ, Wagner NJ, Cleveland NS, Michener WE, Hauer B, Blank LM, Wierckx N, Klebensberger J, Beckham GT. Corrigendum to "Engineering Pseudomonas putida KT2440 for efficient ethylene glycol utilization" [Metab. Eng. 48 (2018) 197-207]. Metab Eng. 2021 May; 65:263-265. PMID: 33486095.
      View in: PubMed
    49. Rorrer JE, Beckham GT, Rom?n-Leshkov Y. Conversion of Polyolefin Waste to Liquid Alkanes with Ru-Based Catalysts under Mild Conditions. JACS Au. 2021 Jan 25; 1(1):8-12. PMID: 34467267.
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    50. Gao Y, Fillmore TL, Munoz N, Bentley GJ, Johnson CW, Kim J, Meadows JA, Zucker JD, Burnet MC, Lipton AK, Bilbao A, Orton DJ, Kim YM, Moore RJ, Robinson EW, Baker SE, Webb-Robertson BM, Guss AM, Gladden JM, Beckham GT, Magnuson JK, Burnum-Johnson KE. High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in Pseudomonas putida KT2440. Front Bioeng Biotechnol. 2020; 8:603488. PMID: 33425868.
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    51. Gluck-Thaler E, Cerutti A, Perez-Quintero AL, Butchacas J, Roman-Reyna V, Madhavan VN, Shantharaj D, Merfa MV, Pesce C, Jauneau A, Vancheva T, Lang JM, Allen C, Verdier V, Gagnevin L, Szurek B, Beckham GT, De La Fuente L, Patel HK, Sonti RV, Bragard C, Leach JE, No?l LD, Slot JC, Koebnik R, Jacobs JM. Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles. Sci Adv. 2020 11; 6(46). PMID: 33188025.
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    52. Pardo I, Jha RK, Bermel RE, Bratti F, Gaddis M, McIntyre E, Michener W, Neidle EL, Dale T, Beckham GT, Johnson CW. Gene amplification, laboratory evolution, and biosensor screening reveal MucK as a terephthalic acid transporter in Acinetobacter baylyi ADP1. Metab Eng. 2020 11; 62:260-274. PMID: 32979486.
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    53. Fetherolf MM, Levy-Booth DJ, Navas LE, Liu J, Grigg JC, Wilson A, Katahira R, Beckham GT, Mohn WW, Eltis LD. Characterization of alkylguaiacol-degrading cytochromes P450 for the biocatalytic valorization of lignin. Proc Natl Acad Sci U S A. 2020 10 13; 117(41):25771-25778. PMID: 32989155.
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    54. Knott BC, Erickson E, Allen MD, Gado JE, Graham R, Kearns FL, Pardo I, Topuzlu E, Anderson JJ, Austin HP, Dominick G, Johnson CW, Rorrer NA, Szostkiewicz CJ, Copi? V, Payne CM, Woodcock HL, Donohoe BS, Beckham GT, McGeehan JE. Characterization and engineering of a two-enzyme system for plastics depolymerization. Proc Natl Acad Sci U S A. 2020 10 13; 117(41):25476-25485. PMID: 32989159.
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    55. Mohamed ET, Werner AZ, Salvach?a D, Singer CA, Szostkiewicz K, Rafael Jim?nez-D?az M, Eng T, Radi MS, Simmons BA, Mukhopadhyay A, Herrg?rd MJ, Singer SW, Beckham GT, Feist AM. Adaptive laboratory evolution of Pseudomonas putida KT2440 improves p-coumaric and ferulic acid catabolism and tolerance. Metab Eng Commun. 2020 Dec; 11:e00143. PMID: 32963959.
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    56. Elmore JR, Dexter GN, Salvach?a D, O'Brien M, Klingeman DM, Gorday K, Michener JK, Peterson DJ, Beckham GT, Guss AM. Engineered Pseudomonas putida simultaneously catabolizes five major components of corn stover lignocellulose: Glucose, xylose, arabinose, p-coumaric acid, and acetic acid. Metab Eng. 2020 11; 62:62-71. PMID: 32828991.
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    57. Li Y, Guan X, Chaffey PK, Ruan Y, Ma B, Shang S, Himmel ME, Beckham GT, Long H, Tan Z. Carbohydrate-binding module O-mannosylation alters binding selectivity to cellulose and lignin. Chem Sci. 2020 Aug 19; 11(34):9262-9271. PMID: 34123172.
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    58. Gado JE, Beckham GT, Payne CM. Improving Enzyme Optimum Temperature Prediction with Resampling Strategies and Ensemble Learning. J Chem Inf Model. 2020 08 24; 60(8):4098-4107. PMID: 32639729.
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    59. Thornburg NE, Pecha MB, Brandner DG, Reed ML, Vermaas JV, Michener WE, Katahira R, Vinzant TB, Foust TD, Donohoe BS, Rom?n-Leshkov Y, Ciesielski PN, Beckham GT. Mesoscale Reaction-Diffusion Phenomena Governing Lignin-First Biomass Fractionation. ChemSusChem. 2020 Sep 07; 13(17):4495-4509. PMID: 32246557.
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    60. Bharadwaj VS, Knott BC, St?hlberg J, Beckham GT, Crowley MF. Reply to Cosgrove: Non-enzymatic action of expansins. J Biol Chem. 2020 05 08; 295(19):6783. PMID: 32385097.
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    61. Salvach?a D, Rydzak T, Auwae R, De Capite A, Black BA, Bouvier JT, Cleveland NS, Elmore JR, Furches A, Huenemann JD, Katahira R, Michener WE, Peterson DJ, Rohrer H, Vardon DR, Beckham GT, Guss AM. Metabolic engineering of Pseudomonas putida for increased polyhydroxyalkanoate production from lignin. Microb Biotechnol. 2020 May; 13(3):813. PMID: 32237217.
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    62. Salvach?a D, Werner AZ, Pardo I, Michalska M, Black BA, Donohoe BS, Haugen SJ, Katahira R, Notonier S, Ramirez KJ, Amore A, Purvine SO, Zink EM, Abraham PE, Giannone RJ, Poudel S, Laible PD, Hettich RL, Beckham GT. Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440. Proc Natl Acad Sci U S A. 2020 04 28; 117(17):9302-9310. PMID: 32245809.
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    63. Bharadwaj VS, Knott BC, St?hlberg J, Beckham GT, Crowley MF. The hydrolysis mechanism of a GH45 cellulase and its potential relation to lytic transglycosylase and expansin function. J Biol Chem. 2020 04 03; 295(14):4477-4487. PMID: 32054684.
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    64. Bentley GJ, Narayanan N, Jha RK, Salvach?a D, Elmore JR, Peabody GL, Black BA, Ramirez K, De Capite A, Michener WE, Werner AZ, Klingeman DM, Schindel HS, Nelson R, Foust L, Guss AM, Dale T, Johnson CW, Beckham GT. Engineering glucose metabolism for enhanced muconic acid production in Pseudomonas putida KT2440. Metab Eng. 2020 05; 59:64-75. PMID: 31931111.
      View in: PubMed
    65. Bissaro B, Streit B, Isaksen I, Eijsink VGH, Beckham GT, DuBois JL, R?hr ?K. Molecular mechanism of the chitinolytic peroxygenase reaction. Proc Natl Acad Sci U S A. 2020 01 21; 117(3):1504-1513. PMID: 31907317.
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    66. Hannon JR, Lynd LR, Andrade O, Benavides PT, Beckham GT, Biddy MJ, Brown N, Chagas MF, Davison BH, Foust T, Junqueira TL, Laser MS, Li Z, Richard T, Tao L, Tuskan GA, Wang M, Woods J, Wyman CE. Technoeconomic and life-cycle analysis of single-step catalytic conversion of wet ethanol into fungible fuel blendstocks. Proc Natl Acad Sci U S A. 2020 06 09; 117(23):12576-12583. PMID: 31767762.
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    67. Prates ET, Crowley MF, Skaf MS, Beckham GT. Catalytic Mechanism of Aryl-Ether Bond Cleavage in Lignin by LigF and LigG. J Phys Chem B. 2019 12 05; 123(48):10142-10151. PMID: 31687816.
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    68. Vermaas JV, Kont R, Beckham GT, Crowley MF, Gudmundsson M, Sandgren M, St?hlberg J, V?ljam?e P, Knott BC. The dissociation mechanism of processive cellulases. Proc Natl Acad Sci U S A. 2019 11 12; 116(46):23061-23067. PMID: 31666327.
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    69. Vermaas JV, Dixon RA, Chen F, Mansfield SD, Boerjan W, Ralph J, Crowley MF, Beckham GT. Passive membrane transport of lignin-related compounds. Proc Natl Acad Sci U S A. 2019 11 12; 116(46):23117-23123. PMID: 31659054.
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    70. Salvach?a D, Rydzak T, Auwae R, De Capite A, Black BA, Bouvier JT, Cleveland NS, Elmore JR, Huenemann JD, Katahira R, Michener WE, Peterson DJ, Rohrer H, Vardon DR, Beckham GT, Guss AM. Metabolic engineering of Pseudomonas putida for increased polyhydroxyalkanoate production from lignin. Microb Biotechnol. 2020 01; 13(1):290-298. PMID: 31468725.
      View in: PubMed
    71. Li WJ, Jayakody LN, Franden MA, Wehrmann M, Daun T, Hauer B, Blank LM, Beckham GT, Klebensberger J, Wierckx N. Laboratory evolution reveals the metabolic and regulatory basis of ethylene glycol metabolism by Pseudomonas putida KT2440. Environ Microbiol. 2019 10; 21(10):3669-3682. PMID: 31166064.
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    72. Davis K, Rover MR, Salvach?a D, Smith RG, Beckham GT, Wen Z, Brown RC, Jarboe LR. Promoting microbial utilization of phenolic substrates from bio-oil. J Ind Microbiol Biotechnol. 2019 Nov; 46(11):1531-1545. PMID: 31270700.
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    85. Settle AE, Berstis L, Zhang S, Rorrer NA, Hu H, Richards RM, Beckham GT, Crowley MF, Vardon DR. Iodine-Catalyzed Isomerization of Dimethyl Muconate. ChemSusChem. 2018 Jun 11; 11(11):1768-1780. PMID: 29687956.
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    158. Beckham GT, Dai Z, Matthews JF, Momany M, Payne CM, Adney WS, Baker SE, Himmel ME. Harnessing glycosylation to improve cellulase activity. Curr Opin Biotechnol. 2012 Jun; 23(3):338-45. PMID: 22186222.
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    159. Taylor CB, Talib MF, McCabe C, Bu L, Adney WS, Himmel ME, Crowley MF, Beckham GT. Computational investigation of glycosylation effects on a family 1 carbohydrate-binding module. J Biol Chem. 2012 Jan 27; 287(5):3147-55. PMID: 22147693.
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    160. Walsh MR, Rainey JD, Lafond PG, Park DH, Beckham GT, Jones MD, Lee KH, Koh CA, Sloan ED, Wu DT, Sum AK. The cages, dynamics, and structuring of incipient methane clathrate hydrates. Phys Chem Chem Phys. 2011 Nov 28; 13(44):19951-9. PMID: 21997437.
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    161. Payne CM, Bomble YJ, Taylor CB, McCabe C, Himmel ME, Crowley MF, Beckham GT. Multiple functions of aromatic-carbohydrate interactions in a processive cellulase examined with molecular simulation. J Biol Chem. 2011 Nov 25; 286(47):41028-35. PMID: 21965672.
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    162. Lin Y, Silvestre-Ryan J, Himmel ME, Crowley MF, Beckham GT, Chu JW. Protein allostery at the solid-liquid interface: endoglucanase attachment to cellulose affects glucan clenching in the binding cleft. J Am Chem Soc. 2011 Oct 19; 133(41):16617-24. PMID: 21877736.
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    163. Hynninen AP, Matthews JF, Beckham GT, Crowley MF, Nimlos MR. Coarse-Grain Model for Glucose, Cellobiose, and Cellotetraose in Water. J Chem Theory Comput. 2011 Jul 12; 7(7):2137-50. PMID: 26606485.
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    164. Beckham GT, Peters B. Optimizing Nucleus Size Metrics for Liquid-Solid Nucleation from Transition Paths of Near-Nanosecond Duration. J Phys Chem Lett. 2011 May 19; 2(10):1133-8. PMID: 26295315.
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    165. Beckham GT, Crowley MF. Examination of the a-chitin structure and decrystallization thermodynamics at the nanoscale. J Phys Chem B. 2011 Apr 21; 115(15):4516-22. PMID: 21452798.
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    166. Bu L, Beckham GT, Shirts MR, Nimlos MR, Adney WS, Himmel ME, Crowley MF. Probing carbohydrate product expulsion from a processive cellulase with multiple absolute binding free energy methods. J Biol Chem. 2011 May 20; 286(20):18161-9. PMID: 21454590.
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    167. Beckham GT, Matthews JF, Peters B, Bomble YJ, Himmel ME, Crowley MF. Molecular-level origins of biomass recalcitrance: decrystallization free energies for four common cellulose polymorphs. J Phys Chem B. 2011 Apr 14; 115(14):4118-27. PMID: 21425804.
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    168. Matthews JF, Bergenstr?hle M, Beckham GT, Himmel ME, Nimlos MR, Brady JW, Crowley MF. High-temperature behavior of cellulose I. J Phys Chem B. 2011 Mar 17; 115(10):2155-66. PMID: 21338135.
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    169. Chundawat SP, Beckham GT, Himmel ME, Dale BE. Deconstruction of lignocellulosic biomass to fuels and chemicals. Annu Rev Chem Biomol Eng. 2011; 2:121-45. PMID: 22432613.
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    170. Beckham GT, Bomble YJ, Bayer EA, Himmel ME, Crowley MF. Applications of computational science for understanding enzymatic deconstruction of cellulose. Curr Opin Biotechnol. 2011 Apr; 22(2):231-8. PMID: 21168322.
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    171. Beckham GT, Bomble YJ, Matthews JF, Taylor CB, Resch MG, Yarbrough JM, Decker SR, Bu L, Zhao X, McCabe C, Wohlert J, Bergenstr?hle M, Brady JW, Adney WS, Himmel ME, Crowley MF. The O-glycosylated linker from the Trichoderma reesei Family 7 cellulase is a flexible, disordered protein. Biophys J. 2010 Dec 01; 99(11):3773-81. PMID: 21112302.
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    172. Bomble YJ, Beckham GT, Matthews JF, Nimlos MR, Himmel ME, Crowley MF. Modeling the self-assembly of the cellulosome enzyme complex. J Biol Chem. 2011 Feb 18; 286(7):5614-23. PMID: 21098021.
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    173. Beckham GT, Matthews JF, Bomble YJ, Bu L, Adney WS, Himmel ME, Nimlos MR, Crowley MF. Identification of amino acids responsible for processivity in a Family 1 carbohydrate-binding module from a fungal cellulase. J Phys Chem B. 2010 Jan 28; 114(3):1447-53. PMID: 20050714.
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    174. Bu L, Beckham GT, Crowley MF, Chang CH, Matthews JF, Bomble YJ, Adney WS, Himmel ME, Nimlos MR. The energy landscape for the interaction of the family 1 carbohydrate-binding module and the cellulose surface is altered by hydrolyzed glycosidic bonds. J Phys Chem B. 2009 Aug 06; 113(31):10994-1002. PMID: 19594145.
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    175. Peters B, Zimmermann NE, Beckham GT, Tester JW, Trout BL. Path sampling calculation of methane diffusivity in natural gas hydrates from a water-vacancy assisted mechanism. J Am Chem Soc. 2008 Dec 24; 130(51):17342-50. PMID: 19053189.
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    176. Beckham GT, Peters B, Trout BL. Evidence for a size dependent nucleation mechanism in solid state polymorph transformations. J Phys Chem B. 2008 Jun 26; 112(25):7460-6. PMID: 18528974.
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    177. Peters B, Beckham GT, Trout BL. Extensions to the likelihood maximization approach for finding reaction coordinates. J Chem Phys. 2007 Jul 21; 127(3):034109. PMID: 17655433.
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    178. Beckham GT, Peters B, Starbuck C, Variankaval N, Trout BL. Surface-mediated nucleation in the solid-state polymorph transformation of terephthalic acid. J Am Chem Soc. 2007 Apr 18; 129(15):4714-23. PMID: 17385859.
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