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Robert T. Batey

TitleProfessor
InstitutionUniversity of Colorado Boulder
DepartmentBiochemistry
Phone303/735-2159
    Other Positions
    TitleAssoc Chair
    InstitutionUniversity of Colorado Boulder
    DepartmentBiochemistry


    Collapse Research 
    Collapse research activities and funding
    R35GM152029     (BATEY, ROBERT T)Mar 1, 2024 - Feb 28, 2029
    NIH
    Riboswitches and their application to RNA visualization and transcription factor interactions with the transcriptome
    Role: Principal Investigator
    R01GM133184     (BATEY, ROBERT T;PALMER, AMY E)Apr 1, 2019 - Mar 31, 2024
    NIH
    Riboglow: a robust multi-color riboswitch-based platform for imaging RNA in living cells
    Role: Co-Principal Investigator
    R01GM120347     (WUTTKE, DEBORAH S.)Sep 22, 2016 - Jun 30, 2025
    NIH
    RNA Regulation of Transcription Factor Activity
    Role: Co-Principal Investigator
    S10RR026516     (BATEY, ROBERT T)Jul 1, 2010 - Jun 30, 2011
    NIH
    Purchase of an Isothermal Titration Calorimeter
    Role: Principal Investigator
    R01GM083953     (BATEY, ROBERT T)May 1, 2008 - Apr 30, 2017
    NIH
    Structure and Mechanism of SAM-responsive Riboswitches
    Role: Principal Investigator
    R01GM073850     (BATEY, ROBERT T)Apr 1, 2005 - Aug 31, 2023
    NIH
    Basis of Gene Regulation by Purine and Cobalamine Riboswitches
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Kletzien OA, Wuttke DS, Batey RT. The RNA-binding domain of hnRNP U extends beyond the RGG/RG motifs. bioRxiv. 2023 Sep 20. PMID: 37786719.
      View in: PubMed
    2. Lammer NC, Allen MA, Batey RT, Wuttke DS. Quantification of transcriptome changes to investigate the role of glucocorticoid receptor-RNA binding during dexamethasone treatment. BMC Res Notes. 2023 Aug 22; 16(1):181. PMID: 37608297.
      View in: PubMed
    3. Lammer NC, Ashraf HM, Ugay DA, Spencer SL, Allen MA, Batey RT, Wuttke DS. RNA binding by the glucocorticoid receptor attenuates dexamethasone-induced gene activation. Sci Rep. 2023 06 09; 13(1):9385. PMID: 37296231.
      View in: PubMed
    4. Lennon SR, Wierzba AJ, Siwik SH, Gryko D, Palmer AE, Batey RT. Targeting Riboswitches with Beta-Axial-Substituted Cobalamins. ACS Chem Biol. 2023 05 19; 18(5):1136-1147. PMID: 37094176.
      View in: PubMed
    5. Hansen LN, Kletzien OA, Urquijo M, Schwanz LT, Batey RT. Context-dependence of T-loop Mediated Long-range RNA Tertiary Interactions. J Mol Biol. 2023 05 15; 435(10):168070. PMID: 37003469.
      View in: PubMed
    6. Hamilton DJ, Hein AE, Wuttke DS, Batey RT. The DNA binding high mobility group box protein family functionally binds RNA. Wiley Interdiscip Rev RNA. 2023 Sep-Oct; 14(5):e1778. PMID: 36646476.
      View in: PubMed
    7. Steiner HR, Lammer NC, Batey RT, Wuttke DS. An Extended DNA Binding Domain of the Estrogen Receptor Alpha Directly Interacts with RNAs in Vitro. Biochemistry. 2022 11 15; 61(22):2490-2494. PMID: 36239332.
      View in: PubMed
    8. Childs-Disney JL, Yang X, Gibaut QMR, Tong Y, Batey RT, Disney MD. Targeting RNA structures with small molecules. Nat Rev Drug Discov. 2022 10; 21(10):736-762. PMID: 35941229.
      View in: PubMed
    9. Hamilton DJ, Hein AE, Holmes ZE, Wuttke DS, Batey RT. The DNA-Binding High-Mobility Group Box Domain of Sox Family Proteins Directly Interacts with RNA In Vitro. Biochemistry. 2022 May 05. PMID: 35511045.
      View in: PubMed
    10. Lennon SR, Batey RT. Regulation of Gene Expression Through Effector-dependent Conformational Switching by Cobalamin Riboswitches. J Mol Biol. 2022 09 30; 434(18):167585. PMID: 35427633.
      View in: PubMed
    11. Drogalis LK, Batey RT. Requirements for efficient ligand-gated co-transcriptional switching in designed variants of the B. subtilis pbuE adenine-responsive riboswitch in E. coli. PLoS One. 2020; 15(12):e0243155. PMID: 33259551.
      View in: PubMed
    12. Iwasaki RS, Batey RT. SPRINT: a Cas13a-based platform for detection of small molecules. Nucleic Acids Res. 2020 09 25; 48(17):e101. PMID: 32797156.
      View in: PubMed
    13. Nakamoto MY, Lammer NC, Batey RT, Wuttke DS. hnRNPK recognition of the B motif of Xist and other biological RNAs. Nucleic Acids Res. 2020 09 18; 48(16):9320-9335. PMID: 32813011.
      View in: PubMed
    14. Matyjasik MM, Hall SD, Batey RT. High Affinity Binding of N2-Modified Guanine Derivatives Significantly Disrupts the Ligand Binding Pocket of the Guanine Riboswitch. Molecules. 2020 May 13; 25(10). PMID: 32414072.
      View in: PubMed
    15. Carter AC, Xu J, Nakamoto MY, Wei Y, Zarnegar BJ, Shi Q, Broughton JP, Ransom RC, Salhotra A, Nagaraja SD, Li R, Dou DR, Yost KE, Cho SW, Mistry A, Longaker MT, Khavari PA, Batey RT, Wuttke DS, Chang HY. Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation. Elife. 2020 05 07; 9. PMID: 32379046.
      View in: PubMed
    16. Miao Z, Adamiak RW, Antczak M, Boniecki MJ, Bujnicki J, Chen SJ, Cheng CY, Cheng Y, Chou FC, Das R, Dokholyan NV, Ding F, Geniesse C, Jiang Y, Joshi A, Krokhotin A, Magnus M, Mailhot O, Major F, Mann TH, Piatkowski P, Pluta R, Popenda M, Sarzynska J, Sun L, Szachniuk M, Tian S, Wang J, Wang J, Watkins AM, Wiedemann J, Xiao Y, Xu X, Yesselman JD, Zhang D, Zhang Y, Zhang Z, Zhao C, Zhao P, Zhou Y, Zok T, Zyla A, Ren A, Batey RT, Golden BL, Huang L, Lilley DM, Liu Y, Patel DJ, Westhof E. RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers. RNA. 2020 08; 26(8):982-995. PMID: 32371455.
      View in: PubMed
    17. Holmes ZE, Hamilton DJ, Hwang T, Parsonnet NV, Rinn JL, Wuttke DS, Batey RT. The Sox2 transcription factor binds RNA. Nat Commun. 2020 04 14; 11(1):1805. PMID: 32286318.
      View in: PubMed
    18. Iwasaki RS, Ozdilek BA, Garst AD, Choudhury A, Batey RT. Small molecule regulated sgRNAs enable control of genome editing in E. coli by Cas9. Nat Commun. 2020 Mar 13; 11(1):1394. PMID: 32170140.
      View in: PubMed
    19. Matyjasik MM, Batey RT. Structural basis for 2'-deoxyguanosine recognition by the 2'-dG-II class of riboswitches. Nucleic Acids Res. 2019 11 18; 47(20):10931-10941. PMID: 31598729.
      View in: PubMed
    20. Parsonnet NV, Lammer NC, Holmes ZE, Batey RT, Wuttke DS. The glucocorticoid receptor DNA-binding domain recognizes RNA hairpin structures with high affinity. Nucleic Acids Res. 2019 09 05; 47(15):8180-8192. PMID: 31147715.
      View in: PubMed
    21. Polaski JT, Kletzien OA, Drogalis LK, Batey RT. A functional genetic screen reveals sequence preferences within a key tertiary interaction in cobalamin riboswitches required for ligand selectivity. Nucleic Acids Res. 2018 09 28; 46(17):9094-9105. PMID: 29945209.
      View in: PubMed
    22. Vicens Q, Mondrag?n E, Reyes FE, Coish P, Aristoff P, Berman J, Kaur H, Kells KW, Wickens P, Wilson J, Gadwood RC, Schostarez HJ, Suto RK, Blount KF, Batey RT. Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch. ACS Chem Biol. 2018 10 19; 13(10):2908-2919. PMID: 30107111.
      View in: PubMed
    23. Braselmann E, Wierzba AJ, Polaski JT, Chrominski M, Holmes ZE, Hung ST, Batan D, Wheeler JR, Parker R, Jimenez R, Gryko D, Batey RT, Palmer AE. A multicolor riboswitch-based platform for imaging of RNA in live mammalian cells. Nat Chem Biol. 2018 10; 14(10):964-971. PMID: 30061719.
      View in: PubMed
    24. Ozdilek BA, Thompson VF, Ahmed NS, White CI, Batey RT, Schwartz JC. Intrinsically disordered RGG/RG domains mediate degenerate specificity in RNA binding. Nucleic Acids Res. 2017 Jul 27; 45(13):7984-7996. PMID: 28575444.
      View in: PubMed
    25. Polaski JT, Webster SM, Johnson JE, Batey RT. Cobalamin riboswitches exhibit a broad range of ability to discriminate between methylcobalamin and adenosylcobalamin. J Biol Chem. 2017 07 14; 292(28):11650-11658. PMID: 28483920.
      View in: PubMed
    26. Miao Z, Adamiak RW, Antczak M, Batey RT, Becka AJ, Biesiada M, Boniecki MJ, Bujnicki JM, Chen SJ, Cheng CY, Chou FC, Ferr?-D'Amar? AR, Das R, Dawson WK, Ding F, Dokholyan NV, Dunin-Horkawicz S, Geniesse C, Kappel K, Kladwang W, Krokhotin A, Lach GE, Major F, Mann TH, Magnus M, Pachulska-Wieczorek K, Patel DJ, Piccirilli JA, Popenda M, Purzycka KJ, Ren A, Rice GM, Santalucia J, Sarzynska J, Szachniuk M, Tandon A, Trausch JJ, Tian S, Wang J, Weeks KM, Williams B, Xiao Y, Xu X, Zhang D, Zok T, Westhof E. RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme. RNA. 2017 05; 23(5):655-672. PMID: 28138060.
      View in: PubMed
    27. Porter EB, Polaski JT, Morck MM, Batey RT. Recurrent RNA motifs as scaffolds for genetically encodable small-molecule biosensors. Nat Chem Biol. 2017 03; 13(3):295-301. PMID: 28092358.
      View in: PubMed
    28. Polaski JT, Holmstrom ED, Nesbitt DJ, Batey RT. Mechanistic Insights into Cofactor-Dependent Coupling of RNA Folding and mRNA Transcription/Translation by a Cobalamin Riboswitch. Cell Rep. 2016 05 03; 15(5):1100-1110. PMID: 27117410.
      View in: PubMed
    29. Batey RT, Kieft JS. Soaking Hexammine Cations into RNA Crystals to Obtain Derivatives for Phasing Diffraction Data. Methods Mol Biol. 2016; 1320:219-32. PMID: 26227046.
      View in: PubMed
    30. Wostenberg C, Ceres P, Polaski JT, Batey RT. A Highly Coupled Network of Tertiary Interactions in the SAM-I Riboswitch and Their Role in Regulatory Tuning. J Mol Biol. 2015 Nov 06; 427(22):3473-3490. PMID: 26343759.
      View in: PubMed
    31. Trausch JJ, Marcano-Vel?zquez JG, Matyjasik MM, Batey RT. Metal Ion-Mediated Nucleobase Recognition by the ZTP Riboswitch. Chem Biol. 2015 Jul 23; 22(7):829-37. PMID: 26144884.
      View in: PubMed
    32. Batey RT. Riboswitches: still a lot of undiscovered country. RNA. 2015 Apr; 21(4):560-3. PMID: 25780138.
      View in: PubMed
    33. Marcano-Vel?zquez JG, Batey RT. Structure-guided mutational analysis of gene regulation by the Bacillus subtilis pbuE adenine-responsive riboswitch in a cellular context. J Biol Chem. 2015 Feb 13; 290(7):4464-75. PMID: 25550163.
      View in: PubMed
    34. Trausch JJ, Batey RT. Design of modular "plug-and-play" expression platforms derived from natural riboswitches for engineering novel genetically encodable RNA regulatory devices. Methods Enzymol. 2015; 550:41-71. PMID: 25605380.
      View in: PubMed
    35. Holmstrom ED, Polaski JT, Batey RT, Nesbitt DJ. Single-molecule conformational dynamics of a biologically functional hydroxocobalamin riboswitch. J Am Chem Soc. 2014 Dec 03; 136(48):16832-43. PMID: 25325398.
      View in: PubMed
    36. Batey RT. Structural biology: Lariat lessons. Nature. 2014 Oct 09; 514(7521):173-4. PMID: 25252981.
      View in: PubMed
    37. Trausch JJ, Xu Z, Edwards AL, Reyes FE, Ross PE, Knight R, Batey RT. Structural basis for diversity in the SAM clan of riboswitches. Proc Natl Acad Sci U S A. 2014 May 06; 111(18):6624-9. PMID: 24753586.
      View in: PubMed
    38. Batey RT. Advances in methods for native expression and purification of RNA for structural studies. Curr Opin Struct Biol. 2014 Jun; 26:1-8. PMID: 24607442.
      View in: PubMed
    39. Porter EB, Marcano-Vel?zquez JG, Batey RT. The purine riboswitch as a model system for exploring RNA biology and chemistry. Biochim Biophys Acta. 2014 Oct; 1839(10):919-930. PMID: 24590258.
      View in: PubMed
    40. Trausch JJ, Batey RT. A disconnect between high-affinity binding and efficient regulation by antifolates and purines in the tetrahydrofolate riboswitch. Chem Biol. 2014 Feb 20; 21(2):205-16. PMID: 24388757.
      View in: PubMed
    41. Ceres P, Trausch JJ, Batey RT. Engineering modular 'ON' RNA switches using biological components. Nucleic Acids Res. 2013 Dec; 41(22):10449-61. PMID: 23999097.
      View in: PubMed
    42. Ceres P, Garst AD, Marcano-Vel?zquez JG, Batey RT. Modularity of select riboswitch expression platforms enables facile engineering of novel genetic regulatory devices. ACS Synth Biol. 2013 Aug 16; 2(8):463-72. PMID: 23654267.
      View in: PubMed
    43. Stoddard CD, Widmann J, Trausch JJ, Marcano-Vel?zquez JG, Knight R, Batey RT. Nucleotides adjacent to the ligand-binding pocket are linked to activity tuning in the purine riboswitch. J Mol Biol. 2013 May 27; 425(10):1596-611. PMID: 23485418.
      View in: PubMed
    44. Fiegland LR, Garst AD, Batey RT, Nesbitt DJ. Single-molecule studies of the lysine riboswitch reveal effector-dependent conformational dynamics of the aptamer domain. Biochemistry. 2012 Nov 13; 51(45):9223-33. PMID: 23067368.
      View in: PubMed
    45. Johnson JE, Reyes FE, Polaski JT, Batey RT. B12 cofactors directly stabilize an mRNA regulatory switch. Nature. 2012 Dec 06; 492(7427):133-7. PMID: 23064232.
      View in: PubMed
    46. Batey RT. Structure and mechanism of purine-binding riboswitches. Q Rev Biophys. 2012 Aug; 45(3):345-81. PMID: 22850604.
      View in: PubMed
    47. Garst AD, Porter EB, Batey RT. Insights into the regulatory landscape of the lysine riboswitch. J Mol Biol. 2012 Oct 12; 423(1):17-33. PMID: 22771573.
      View in: PubMed
    48. Trausch JJ, Ceres P, Reyes FE, Batey RT. The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer. Structure. 2011 Oct 12; 19(10):1413-23. PMID: 21906956.
      View in: PubMed
    49. Vicens Q, Mondrag?n E, Batey RT. Molecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by conformational selection. Nucleic Acids Res. 2011 Oct; 39(19):8586-98. PMID: 21745821.
      View in: PubMed
    50. Garst AD, Edwards AL, Batey RT. Riboswitches: structures and mechanisms. Cold Spring Harb Perspect Biol. 2011 Jun 01; 3(6). PMID: 20943759.
      View in: PubMed
    51. Daldrop P, Reyes FE, Robinson DA, Hammond CM, Lilley DM, Batey RT, Brenk R. Novel ligands for a purine riboswitch discovered by RNA-ligand docking. Chem Biol. 2011 Mar 25; 18(3):324-35. PMID: 21439477.
      View in: PubMed
    52. Batey RT. Recognition of S-adenosylmethionine by riboswitches. Wiley Interdiscip Rev RNA. 2011 Mar-Apr; 2(2):299-311. PMID: 21957011.
      View in: PubMed
    53. Edwards AL, Reyes FE, H?roux A, Batey RT. Structural basis for recognition of S-adenosylhomocysteine by riboswitches. RNA. 2010 Nov; 16(11):2144-55. PMID: 20864509.
      View in: PubMed
    54. Stoddard CD, Montange RK, Hennelly SP, Rambo RP, Sanbonmatsu KY, Batey RT. Free state conformational sampling of the SAM-I riboswitch aptamer domain. Structure. 2010 Jul 14; 18(7):787-97. PMID: 20637415.
      View in: PubMed
    55. Montange RK, Mondrag?n E, van Tyne D, Garst AD, Ceres P, Batey RT. Discrimination between closely related cellular metabolites by the SAM-I riboswitch. J Mol Biol. 2010 Feb 26; 396(3):761-72. PMID: 20006621.
      View in: PubMed
    56. Reyes FE, Garst AD, Batey RT. Strategies in RNA crystallography. Methods Enzymol. 2009; 469:119-39. PMID: 20946787.
      View in: PubMed
    57. Gelinas AD, Paschini M, Reyes FE, H?roux A, Batey RT, Lundblad V, Wuttke DS. Telomere capping proteins are structurally related to RPA with an additional telomere-specific domain. Proc Natl Acad Sci U S A. 2009 Nov 17; 106(46):19298-303. PMID: 19884503.
      View in: PubMed
    58. Vicens Q, Gooding AR, Duarte LF, Batey RT. Preparation of group I introns for biochemical studies and crystallization assays by native affinity purification. PLoS One. 2009 Aug 27; 4(8):e6740. PMID: 19710925.
      View in: PubMed
    59. Garst AD, Batey RT. A switch in time: detailing the life of a riboswitch. Biochim Biophys Acta. 2009 Sep-Oct; 1789(9-10):584-91. PMID: 19595806.
      View in: PubMed
    60. Gilbert SD, Reyes FE, Edwards AL, Batey RT. Adaptive ligand binding by the purine riboswitch in the recognition of guanine and adenine analogs. Structure. 2009 Jun 10; 17(6):857-68. PMID: 19523903.
      View in: PubMed
    61. Hardin JW, Reyes FE, Batey RT. Analysis of a critical interaction within the archaeal box C/D small ribonucleoprotein complex. J Biol Chem. 2009 May 29; 284(22):15317-24. PMID: 19336398.
      View in: PubMed
    62. Gilbert SD, Batey RT. Monitoring RNA-ligand interactions using isothermal titration calorimetry. Methods Mol Biol. 2009; 540:97-114. PMID: 19381555.
      View in: PubMed
    63. Edwards AL, Garst AD, Batey RT. Determining structures of RNA aptamers and riboswitches by X-ray crystallography. Methods Mol Biol. 2009; 535:135-63. PMID: 19377976.
      View in: PubMed
    64. Edwards AL, Batey RT. A structural basis for the recognition of 2'-deoxyguanosine by the purine riboswitch. J Mol Biol. 2009 Jan 23; 385(3):938-48. PMID: 19007790.
      View in: PubMed
    65. Garst AD, H?roux A, Rambo RP, Batey RT. Crystal structure of the lysine riboswitch regulatory mRNA element. J Biol Chem. 2008 Aug 15; 283(33):22347-51. PMID: 18593706.
      View in: PubMed
    66. Stoddard CD, Gilbert SD, Batey RT. Ligand-dependent folding of the three-way junction in the purine riboswitch. RNA. 2008 Apr; 14(4):675-84. PMID: 18268025.
      View in: PubMed
    67. Gilbert SD, Rambo RP, Van Tyne D, Batey RT. Structure of the SAM-II riboswitch bound to S-adenosylmethionine. Nat Struct Mol Biol. 2008 Feb; 15(2):177-82. PMID: 18204466.
      View in: PubMed
    68. Vicens Q, Allen MA, Gilbert SD, Reznik B, Gooding AR, Batey RT. The Cech Symposium: a celebration of 25 years of ribozymes, 10 years of TERT, and 60 years of Tom. RNA. 2008 Mar; 14(3):397-403. PMID: 18203922.
      View in: PubMed
    69. Montange RK, Batey RT. Riboswitches: emerging themes in RNA structure and function. Annu Rev Biophys. 2008; 37:117-33. PMID: 18573075.
      View in: PubMed
    70. Gilbert SD, Love CE, Edwards AL, Batey RT. Mutational analysis of the purine riboswitch aptamer domain. Biochemistry. 2007 Nov 20; 46(46):13297-309. PMID: 17960911.
      View in: PubMed
    71. Keel AY, Rambo RP, Batey RT, Kieft JS. A general strategy to solve the phase problem in RNA crystallography. Structure. 2007 Jul; 15(7):761-72. PMID: 17637337.
      View in: PubMed
    72. Batey RT, Kieft JS. Improved native affinity purification of RNA. RNA. 2007 Aug; 13(8):1384-9. PMID: 17548432.
      View in: PubMed
    73. Stoddard CD, Batey RT. Mix-and-match riboswitches. ACS Chem Biol. 2006 Dec 15; 1(12):751-4. PMID: 17240972.
      View in: PubMed
    74. Gilbert SD, Mediatore SJ, Batey RT. Modified pyrimidines specifically bind the purine riboswitch. J Am Chem Soc. 2006 Nov 08; 128(44):14214-5. PMID: 17076468.
      View in: PubMed
    75. Hardin JW, Batey RT. The bipartite architecture of the sRNA in an archaeal box C/D complex is a primary determinant of specificity. Nucleic Acids Res. 2006; 34(18):5039-51. PMID: 16984968.
      View in: PubMed
    76. Gilbert SD, Batey RT. Riboswitches: fold and function. Chem Biol. 2006 Aug; 13(8):805-7. PMID: 16931328.
      View in: PubMed
    77. Montange RK, Batey RT. Structure of the S-adenosylmethionine riboswitch regulatory mRNA element. Nature. 2006 Jun 29; 441(7097):1172-5. PMID: 16810258.
      View in: PubMed
    78. Batey RT. Structures of regulatory elements in mRNAs. Curr Opin Struct Biol. 2006 Jun; 16(3):299-306. PMID: 16707260.
      View in: PubMed
    79. Gilbert SD, Stoddard CD, Wise SJ, Batey RT. Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain. J Mol Biol. 2006 Jun 09; 359(3):754-68. PMID: 16650860.
      View in: PubMed
    80. Gilbert SD, Montange RK, Stoddard CD, Batey RT. Structural studies of the purine and SAM binding riboswitches. Cold Spring Harb Symp Quant Biol. 2006; 71:259-68. PMID: 17381305.
      View in: PubMed
    81. Gilbert SD, Batey RT. Riboswitches: natural SELEXion. Cell Mol Life Sci. 2005 Nov; 62(21):2401-4. PMID: 16231083.
      View in: PubMed
    82. Pleshe E, Truesdell J, Batey RT. Structure of a class II TrmH tRNA-modifying enzyme from Aquifex aeolicus. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Aug 01; 61(Pt 8):722-8. PMID: 16511140.
      View in: PubMed
    83. Batey RT, Gilbert SD, Montange RK. Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine. Nature. 2004 Nov 18; 432(7015):411-5. PMID: 15549109.
      View in: PubMed
    84. Kieft JS, Batey RT. A general method for rapid and nondenaturing purification of RNAs. RNA. 2004 Jun; 10(6):988-95. PMID: 15146082.
      View in: PubMed
    85. Hardin JW, Batey RT. Curse of the hairpin loop. Structure. 2004 May; 12(5):731-2. PMID: 15130463.
      View in: PubMed
    86. Doudna JA, Batey RT. Structural insights into the signal recognition particle. Annu Rev Biochem. 2004; 73:539-57. PMID: 15189152.
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    87. Cochrane JC, Batey RT, Strobel SA. Quantitation of free energy profiles in RNA-ligand interactions by nucleotide analog interference mapping. RNA. 2003 Oct; 9(10):1282-9. PMID: 13130142.
      View in: PubMed
    88. O'Loughlin EV, Pang GP, Noltorp R, Koina C, Batey R, Clancy R. Interleukin 2 modulates ion secretion and cell proliferation in cultured human small intestinal enterocytes. Gut. 2001 Nov; 49(5):636-43. PMID: 11600465.
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    89. Doherty EA, Batey RT, Masquida B, Doudna JA. A universal mode of helix packing in RNA. Nat Struct Biol. 2001 Apr; 8(4):339-43. PMID: 11276255.
      View in: PubMed
    90. Batey RT, Sagar MB, Doudna JA. Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle. J Mol Biol. 2001 Mar 16; 307(1):229-46. PMID: 11243816.
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    91. Lucast LJ, Batey RT, Doudna JA. Large-scale purification of a stable form of recombinant tobacco etch virus protease. Biotechniques. 2001 Mar; 30(3):544-6, 548, 550 passim. PMID: 11252791.
      View in: PubMed
    92. Ren Z, Pang G, Batey R, Routley D, Russell A, Musicka M, Dunkley M, Beagley K, Clancy R. Non-urease producing Helicobacter pylori in chronic gastritis. Aust N Z J Med. 2000 Oct; 30(5):578-84. PMID: 11108068.
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    93. Ren Z, Pang G, Lee R, Batey R, Dunkley M, Borody T, Clancy R. Circulating T-cell response to Helicobacter pylori infection in chronic gastritis. Helicobacter. 2000 Sep; 5(3):135-41. PMID: 10971677.
      View in: PubMed
    94. Batey R, Cao Q, Pang G, Clancy RL. Effects of CH-100, a chinese herbal medicine, on acute concanavalin A-mediated hepatitis in control and alcohol-fed rats. Alcohol Clin Exp Res. 2000 Jun; 24(6):852-8. PMID: 10888074.
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    95. Batey RT, Rambo RP, Lucast L, Rha B, Doudna JA. Crystal structure of the ribonucleoprotein core of the signal recognition particle. Science. 2000 Feb 18; 287(5456):1232-9. PMID: 10678824.
      View in: PubMed
    96. Cao Q, Batey R, Pang G, Clancy R. Ethanol-altered liver-associated T cells mediate liver injury in rats administered Concanavalin A (Con A) or lipopolysaccharide (LPS). Alcohol Clin Exp Res. 1999 Oct; 23(10):1660-7. PMID: 10549999.
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    97. Ren Z, Pang G, Musicka M, Dunkley M, Batey R, Beagley K, Clancy R. Coccoid forms of Helicobacter pylori can be viable. Microbios. 1999; 97(388):153-63. PMID: 10413871.
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    98. Cao Q, Batey R, Pang G, Russell A, Clancy R. IL-6, IFN-gamma and TNF-alpha production by liver-associated T cells and acute liver injury in rats administered concanavalin A. Immunol Cell Biol. 1998 Dec; 76(6):542-9. PMID: 9893032.
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    99. Batey RT, Williamson JR. Effects of polyvalent cations on the folding of an rRNA three-way junction and binding of ribosomal protein S15. RNA. 1998 Aug; 4(8):984-97. PMID: 9701289.
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    100. Batey RT, Doudna JA. The parallel universe of RNA folding. Nat Struct Biol. 1998 May; 5(5):337-40. PMID: 9586989.
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    101. Cao Q, Batey R, Pang G, Clancy R. Altered T-lymphocyte responsiveness to polyclonal cell activators is responsible for liver cell necrosis in alcohol-fed rats. Alcohol Clin Exp Res. 1998 May; 22(3):723-9. PMID: 9622456.
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    102. Batey R, Cao Q, Madsen G, Pang G, Russell A, Clancy R. Decreased tumor necrosis factor-alpha and interleukin-1alpha production from intrahepatic mononuclear cells in chronic ethanol consumption and upregulation by endotoxin. Alcohol Clin Exp Res. 1998 Feb; 22(1):150-6. PMID: 9514300.
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    103. Batey RT, Cloutier N, Mao H, Williamson JR. Improved large scale culture of Methylophilus methylotrophus for 13C/15N labeling and random fractional deuteration of ribonucleotides. Nucleic Acids Res. 1996 Dec 01; 24(23):4836-7. PMID: 8972874.
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    104. Chowdhury MA, Batey R. Complications and outcome of percutaneous endoscopic gastrostomy in different patient groups. J Gastroenterol Hepatol. 1996 Sep; 11(9):835-9. PMID: 8889962.
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    105. Batey RT, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition. J Mol Biol. 1996 Aug 30; 261(4):550-67. PMID: 8794876.
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    106. Batey RT, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site. J Mol Biol. 1996 Aug 30; 261(4):536-49. PMID: 8794875.
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    107. Pang G, Buret A, O'Loughlin E, Smith A, Batey R, Clancy R. Immunologic, functional, and morphological characterization of three new human small intestinal epithelial cell lines. Gastroenterology. 1996 Jul; 111(1):8-18. PMID: 8698229.
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    108. Keegan A, Martini R, Batey R. Ethanol-related liver injury in the rat: a model of steatosis, inflammation and pericentral fibrosis. J Hepatol. 1995 Nov; 23(5):591-600. PMID: 8583149.
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    109. Batey RT, Battiste JL, Williamson JR. Preparation of isotopically enriched RNAs for heteronuclear NMR. Methods Enzymol. 1995; 261:300-22. PMID: 8569501.
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    110. Pang G, Couch L, Batey R, Clancy R, Cripps A. GM-CSF, IL-1 alpha, IL-1 beta, IL-6, IL-8, IL-10, ICAM-1 and VCAM-1 gene expression and cytokine production in human duodenal fibroblasts stimulated with lipopolysaccharide, IL-1 alpha and TNF-alpha. Clin Exp Immunol. 1994 Jun; 96(3):437-43. PMID: 8004813.
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    111. Keegan A, Batey R. Ethanol consumption by rats is inversely related to hepatic alcohol dehydrogenase activity. J Gastroenterol Hepatol. 1994 Mar-Apr; 9(2):205-6. PMID: 8003657.
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    112. Patterson F, Bumak J, Batey R. Changing prevalence of hepatitis B virus in urbanized Australian aborigines. J Gastroenterol Hepatol. 1993 Sep-Oct; 8(5):410-3. PMID: 8218988.
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    113. Keegan A, Batey R. Ultrastructural filament organization of hepatocyte cytoplasm revealed by embedment-free sections of rat liver. J Gastroenterol Hepatol. 1993 Sep-Oct; 8(5):451-6. PMID: 8218993.
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    114. Pang G, Buret A, Batey RT, Chen QY, Couch L, Cripps A, Clancy R. Morphological, phenotypic and functional characteristics of a pure population of CD56+ CD16- CD3- large granular lymphocytes generated from human duodenal mucosa. Immunology. 1993 Jul; 79(3):498-505. PMID: 7691728.
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    115. Keegan A, Batey R. Dietary carbohydrate accelerates ethanol elimination, but does not alter hepatic alcohol dehydrogenase. Alcohol Clin Exp Res. 1993 Apr; 17(2):431-3. PMID: 8488989.
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    116. Batey RT, Inada M, Kujawinski E, Puglisi JD, Williamson JR. Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA. Nucleic Acids Res. 1992 Sep 11; 20(17):4515-23. PMID: 1383928.
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    117. Senear DF, Batey R. Comparison of operator-specific and nonspecific DNA binding of the lambda cI repressor: [KCl] and pH effects. Biochemistry. 1991 Jul 09; 30(27):6677-88. PMID: 1829636.
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    118. Giles W, Patterson T, Sanders F, Batey R, Thomas D, Collins J. Outpatient methadone programme for pregnant heroin using women. Aust N Z J Obstet Gynaecol. 1989 Aug; 29(3 Pt 1):225-9. PMID: 2604651.
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