 Software
"Software" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus,
MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure,
which enables searching at various levels of specificity.
Sequential operating programs and data which instruct the functioning of a digital computer.
| Descriptor ID |
D012984
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| MeSH Number(s) |
L01.224.900
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| Concept/Terms |
Software- Software
- Computer Software
- Software, Computer
- Computer Programs
- Computer Program
- Program, Computer
- Programs, Computer
Software Tools- Software Tools
- Software Tool
- Tool, Software
- Tools, Software
Computer Applications Software- Computer Applications Software
- Applications Software, Computer
- Applications Softwares, Computer
- Computer Applications Softwares
- Software, Computer Applications
- Softwares, Computer Applications
- Computer Software Applications
- Application, Computer Software
- Applications, Computer Software
- Computer Software Application
- Software Application, Computer
- Software Applications, Computer
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Below are MeSH descriptors whose meaning is more general than "Software".
Below are MeSH descriptors whose meaning is more specific than "Software".
This graph shows the total number of publications written about "Software" by people in this website by year, and whether "Software" was a major or minor topic of these publications.
To see the data from this visualization as text, click here.
| Year | Major Topic | Minor Topic | Total |
|---|
| 1995 | 0 | 2 | 2 | | 1996 | 1 | 1 | 2 | | 1997 | 0 | 3 | 3 | | 1998 | 1 | 2 | 3 | | 1999 | 1 | 3 | 4 | | 2000 | 0 | 2 | 2 | | 2002 | 1 | 4 | 5 | | 2003 | 0 | 5 | 5 | | 2004 | 1 | 7 | 8 | | 2005 | 4 | 10 | 14 | | 2006 | 4 | 8 | 12 | | 2007 | 6 | 13 | 19 | | 2008 | 9 | 11 | 20 | | 2009 | 12 | 6 | 18 | | 2010 | 11 | 9 | 20 | | 2011 | 12 | 22 | 34 | | 2012 | 16 | 13 | 29 | | 2013 | 12 | 11 | 23 | | 2014 | 17 | 13 | 30 | | 2015 | 17 | 9 | 26 | | 2016 | 9 | 13 | 22 | | 2017 | 13 | 18 | 31 | | 2018 | 11 | 17 | 28 | | 2019 | 13 | 14 | 27 | | 2020 | 10 | 11 | 21 | | 2021 | 12 | 12 | 24 | | 2022 | 10 | 6 | 16 | | 2023 | 10 | 11 | 21 | | 2024 | 8 | 12 | 20 | | 2025 | 18 | 7 | 25 |
To return to the timeline, click here.
Below are the most recent publications written about "Software" by people in Profiles.
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Liu X, Tang YH, Blachly J, Edge S, Jakubek YA, McCarter M, Naqash AR, Nepple KG, Osman A, Reilley MJ, Riedlinger G, Salhia B, Schneider BP, Shriver C, Churchman ML, Rounbehler RJ, Teer JK, Gillis N, Teng M. qcCHIP: an R package to identify clonal hematopoiesis variants using cohort-specific data characteristics. Bioinformatics. 2025 Sep 01; 41(9).
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Alherech M, Beckham GT, Choi H. Implementation and evaluation of multi-dual mode counter-current chromatography in the CUP Modeler software. J Chromatogr A. 2025 Oct 11; 1760:466265.
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Wynn EA, Mould KJ, Vestal BE, Moore CM. Simulating paired and longitudinal single-cell RNA sequencing data with rescueSim. Bioinformatics. 2025 Aug 02; 41(8).
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Kuehl M, Okabayashi Y, Wong MN, Gernhold L, Gut G, Kaiser N, Schwerk M, Gräfe SK, Ma FY, Tanevski J, Schäfer PSL, Mezher S, Sarabia Del Castillo J, Goldbeck-Strieder T, Zolotareva O, Hartung M, Delgado Chaves FM, Klinkert L, Gnirck AC, Spehr M, Fleck D, Joodaki M, Parra V, Shaigan M, Diebold M, Prinz M, Kranz J, Kux JM, Braun F, Kretz O, Wu H, Grahammer F, Heins S, Zimmermann M, Haas F, Kylies D, Wanner N, Czogalla J, Dumoulin B, Zolotarev N, Lindenmeyer M, Karlson P, Nyengaard JR, Sebode M, Weidemann S, Wiech T, Groene HJ, Tomas NM, Meyer-Schwesinger C, Kuppe C, Kramann R, Karras A, Bruneval P, Tharaux PL, Pastene D, Yard B, Schaub JA, McCown PJ, Pyle L, Choi YJ, Yokoo T, Baumbach J, Sáez PJ, Costa I, Turner JE, Hodgin JB, Saez-Rodriguez J, Huber TB, Bjornstad P, Kretzler M, Lenoir O, Nikolic-Paterson DJ, Pelkmans L, Bonn S, Puelles VG. Pathology-oriented multiplexing enables integrative disease mapping. Nature. 2025 Aug; 644(8076):516-526.
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Ghosh T, Baxter RM, Seal S, Lui VG, Rudra P, Vu T, Hsieh EWY, Ghosh D. cytoKernel: robust kernel embeddings for assessing differential expression of single-cell data. Bioinformatics. 2025 Jul 01; 41(7).
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Gillenwater LA, Hunter LE, Costello JC. GRACKLE: an interpretable matrix factorization approach for biomedical representation learning. Bioinformatics. 2025 Jul 01; 41(Supplement_1):i609-i618.
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Kalinin AA, Arevalo J, Serrano E, Vulliard L, Tsang H, Bornholdt M, Muñoz AF, Sivagurunathan S, Rajwa B, Carpenter AE, Way GP, Singh S. A versatile information retrieval framework for evaluating profile strength and similarity. Nat Commun. 2025 Jun 04; 16(1):5181.
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Showers WM, Desai J, Engel KL, Smith C, Jordan CT, Gillen AE. SCUBA implements a storage format-agnostic API for single-cell data access in R. F1000Res. 2024; 13:1256.
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Sun L, Ma Q, Cai C, Labaf M, Jain A, Dias C, Rockowitz S, Sliz P. scDown: A Pipeline for Single-Cell RNA-Seq Downstream Analysis. Int J Mol Sci. 2025 May 30; 26(11).
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Briggs JK, Jin E, Merrins MJ, Benninger RKP. CRISP: correlation-refined image segmentation process. BMC Bioinformatics. 2025 May 26; 26(1):135.
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