 Software
"Software" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus,
MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure,
which enables searching at various levels of specificity.
Sequential operating programs and data which instruct the functioning of a digital computer.
| Descriptor ID |
D012984
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| MeSH Number(s) |
L01.224.900
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| Concept/Terms |
Software- Software
- Computer Software
- Software, Computer
- Computer Programs
- Computer Program
- Program, Computer
- Programs, Computer
Software Tools- Software Tools
- Software Tool
- Tool, Software
- Tools, Software
Computer Applications Software- Computer Applications Software
- Applications Software, Computer
- Applications Softwares, Computer
- Computer Applications Softwares
- Software, Computer Applications
- Softwares, Computer Applications
- Computer Software Applications
- Application, Computer Software
- Applications, Computer Software
- Computer Software Application
- Software Application, Computer
- Software Applications, Computer
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Below are MeSH descriptors whose meaning is more general than "Software".
Below are MeSH descriptors whose meaning is more specific than "Software".
This graph shows the total number of publications written about "Software" by people in this website by year, and whether "Software" was a major or minor topic of these publications.
To see the data from this visualization as text, click here.
| Year | Major Topic | Minor Topic | Total |
|---|
| 1996 | 1 | 1 | 2 | | 1997 | 0 | 3 | 3 | | 1998 | 1 | 3 | 4 | | 1999 | 1 | 3 | 4 | | 2000 | 0 | 2 | 2 | | 2001 | 0 | 1 | 1 | | 2002 | 1 | 4 | 5 | | 2003 | 0 | 5 | 5 | | 2004 | 1 | 7 | 8 | | 2005 | 4 | 9 | 13 | | 2006 | 4 | 8 | 12 | | 2007 | 6 | 13 | 19 | | 2008 | 8 | 10 | 18 | | 2009 | 12 | 7 | 19 | | 2010 | 11 | 9 | 20 | | 2011 | 10 | 23 | 33 | | 2012 | 16 | 13 | 29 | | 2013 | 12 | 11 | 23 | | 2014 | 17 | 12 | 29 | | 2015 | 16 | 8 | 24 | | 2016 | 9 | 14 | 23 | | 2017 | 13 | 19 | 32 | | 2018 | 12 | 17 | 29 | | 2019 | 13 | 14 | 27 | | 2020 | 9 | 11 | 20 | | 2021 | 12 | 12 | 24 | | 2022 | 10 | 6 | 16 | | 2023 | 10 | 10 | 20 | | 2024 | 9 | 12 | 21 | | 2025 | 21 | 8 | 29 | | 2026 | 3 | 0 | 3 |
To return to the timeline, click here.
Below are the most recent publications written about "Software" by people in Profiles.
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Schneider K, Walker S, Gignoux C, Layer R. STABIX: summary-statistic-based GWAS indexing and compression. Bioinformatics. 2026 Feb 28; 42(3).
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Burke D, Raychaudhuri J, Chuong E, Taylor W, Layer R. TEPEAK: A novel method for identifying and characterizing polymorphic transposable elements in non-model species populations. PLoS Comput Biol. 2026 Jan; 22(1):e1013122.
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Fouquier J, Stanislawski M, O'Connor J, Scadden A, Lozupone C. EXPLANA: a user-friendly workflow for EXPLoratory ANAlysis and feature selection in cross-sectional and longitudinal microbiome studies. Bioinformatics. 2026 Jan 02; 42(1).
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Docter J, Mansfeldt C. Environmental Census: Modeling Synthetic Biology Ecological Risk with Metagenomic Enzymatic Data and High-Performance Computing. ACS Synth Biol. 2025 Dec 19; 14(12):4846-4856.
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Lau A, Wang X, Xu T, Schramm T, Abiead YE, Petras D, Phelan VV, Wang M. Multiple Spectrum Alignment for Molecular Networking Exploration and Discovery. J Am Soc Mass Spectrom. 2026 Jan 07; 37(1):126-134.
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Komp E, Johansson KE, Gauthier NP, Gado JE, Lindorff-Larsen K, Beckham GT. Accessible, uniform protein property prediction with a scikit-learn based toolset AIDE. Bioinformatics. 2025 Oct 02; 41(10).
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Pitsch JW, Wirth SA, Costantino NT, Mejia J, Doss RM, Warren AVA, Ustanik J, Yang X, Breuss MW. CREPE (CREate Primers and Evaluate): A Computational Tool for Large-Scale Primer Design and Specificity Analysis. Genes (Basel). 2025 Sep 10; 16(9).
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Liu X, Tang YH, Blachly J, Edge S, Jakubek YA, McCarter M, Naqash AR, Nepple KG, Osman A, Reilley MJ, Riedlinger G, Salhia B, Schneider BP, Shriver C, Churchman ML, Rounbehler RJ, Teer JK, Gillis N, Teng M. qcCHIP: an R package to identify clonal hematopoiesis variants using cohort-specific data characteristics. Bioinformatics. 2025 Sep 01; 41(9).
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Alherech M, Beckham GT, Choi H. Implementation and evaluation of multi-dual mode counter-current chromatography in the CUP Modeler software. J Chromatogr A. 2025 Oct 11; 1760:466265.
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Wynn EA, Mould KJ, Vestal BE, Moore CM. Simulating paired and longitudinal single-cell RNA sequencing data with rescueSim. Bioinformatics. 2025 Aug 02; 41(8).
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