 Databases, Protein
"Databases, Protein" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus,
MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure,
which enables searching at various levels of specificity.
Databases containing information about PROTEINS such as AMINO ACID SEQUENCE; PROTEIN CONFORMATION; and other properties.
| Descriptor ID |
D030562
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| MeSH Number(s) |
L01.313.500.750.300.188.400.300.750 L01.313.500.750.300.188.400.325.710 L01.470.750.750.300.750 L01.470.750.750.325.710
|
| Concept/Terms |
Protein Sequence Databases- Protein Sequence Databases
- Database, Protein Sequence
- Databases, Protein Sequence
- Protein Sequence Database
- Sequence Database, Protein
- Sequence Databases, Protein
- Databases, Amino Acid Sequence
- Amino Acid Sequence Databases
Protein Structure Databases- Protein Structure Databases
- Database, Protein Structure
- Databases, Protein Structure
- Protein Structure Database
- Structure Database, Protein
- Structure Databases, Protein
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Below are MeSH descriptors whose meaning is more general than "Databases, Protein".
- Information Science [L]
- Information Science [L01]
- Informatics [L01.313]
- Medical Informatics [L01.313.500]
- Medical Informatics Applications [L01.313.500.750]
- Information Systems [L01.313.500.750.300]
- Databases as Topic [L01.313.500.750.300.188]
- Databases, Factual [L01.313.500.750.300.188.400]
- Databases, Chemical [L01.313.500.750.300.188.400.300]
- Databases, Protein [L01.313.500.750.300.188.400.300.750]
- Databases, Genetic [L01.313.500.750.300.188.400.325]
- Databases, Protein [L01.313.500.750.300.188.400.325.710]
- Information Storage and Retrieval [L01.470]
- Databases as Topic [L01.470.750]
- Databases, Factual [L01.470.750.750]
- Databases, Chemical [L01.470.750.750.300]
- Databases, Protein [L01.470.750.750.300.750]
- Databases, Genetic [L01.470.750.750.325]
- Databases, Protein [L01.470.750.750.325.710]
Below are MeSH descriptors whose meaning is more specific than "Databases, Protein".
This graph shows the total number of publications written about "Databases, Protein" by people in this website by year, and whether "Databases, Protein" was a major or minor topic of these publications.
To see the data from this visualization as text, click here.
| Year | Major Topic | Minor Topic | Total |
|---|
| 2003 | 0 | 2 | 2 | | 2004 | 1 | 0 | 1 | | 2005 | 0 | 3 | 3 | | 2006 | 2 | 3 | 5 | | 2007 | 1 | 4 | 5 | | 2008 | 3 | 3 | 6 | | 2009 | 3 | 4 | 7 | | 2010 | 0 | 2 | 2 | | 2011 | 1 | 1 | 2 | | 2012 | 2 | 4 | 6 | | 2013 | 2 | 0 | 2 | | 2014 | 1 | 3 | 4 | | 2015 | 0 | 1 | 1 | | 2016 | 1 | 4 | 5 | | 2019 | 0 | 1 | 1 | | 2020 | 0 | 1 | 1 | | 2021 | 0 | 1 | 1 | | 2023 | 0 | 1 | 1 |
To return to the timeline, click here.
Below are the most recent publications written about "Databases, Protein" by people in Profiles.
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Rothfuss MT, Becht DC, Zeng B, McClelland LJ, Yates-Hansen C, Bowler BE. High-Accuracy Prediction of Stabilizing Surface Mutations to the Three-Helix Bundle, UBA(1), with EmCAST. J Am Chem Soc. 2023 10 25; 145(42):22979-22992.
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Vann KR, Vishweshwaraiah YL, Dokholyan NV, Kutateladze TG. Searching for methyllysine-binding aromatic cages. Biochem J. 2021 10 15; 478(19):3613-3619.
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Zivanovic S, Colizzi F, Moreno D, Hospital A, Soliva R, Orozco M. Exploring the Conformational Landscape of Bioactive Small Molecules. J Chem Theory Comput. 2020 Oct 13; 16(10):6575-6585.
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Liu X, Lu S, Song K, Shen Q, Ni D, Li Q, He X, Zhang H, Wang Q, Chen Y, Li X, Wu J, Sheng C, Chen G, Liu Y, Lu X, Zhang J. Unraveling allosteric landscapes of allosterome with ASD. Nucleic Acids Res. 2020 01 08; 48(D1):D394-D401.
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Ayati M, Wiredja D, Schlatzer D, Maxwell S, Li M, Koyut?rk M, Chance MR. CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis. PLoS Comput Biol. 2019 02; 15(2):e1006678.
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Song K, Zhang J, Lu S. Progress in Allosteric Database. Adv Exp Med Biol. 2019; 1163:65-87.
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Wither MJ, Hansen KC, Reisz JA. Mass Spectrometry-Based Bottom-Up Proteomics: Sample Preparation, LC-MS/MS Analysis, and Database Query Strategies. Curr Protoc Protein Sci. 2016 Nov 01; 86:16.4.1-16.4.20.
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Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, T?r?nen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sede?o-Cort?s AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fern?ndez JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P. An expanded evaluation of protein function prediction methods shows an improvement in accuracy. Genome Biol. 2016 09 07; 17(1):184.
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Goldstein RA, Pollock DD. The tangled bank of amino acids. Protein Sci. 2016 07; 25(7):1354-62.
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Lee W, Petit CM, Cornilescu G, Stark JL, Markley JL. The AUDANA algorithm for automated protein 3D structure determination from NMR NOE data. J Biomol NMR. 2016 06; 65(2):51-7.
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