Colorado PROFILES, The Colorado Clinical and Translational Sciences Institute (CCTSI)
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Shasha Shi

TitleResearch Associate
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM-BioChem&Molecular Genetics

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Li X, Li J, Srivastava P, Shi S, Issaian A, Bevers S, Wagner ME, D'Alessandro A, Zhao R. U1 snRNP and RNA polymerase II interaction is predominantly mediated by Prp40 rather than U1-70K in yeast. bioRxiv. 2025 Aug 30. PMID: 40909591.
      View in: PubMed
    2. Kuang Z, Li X, Tang Z, Kosmyna B, Shi S, Lambert K, Zhang W, Giovinazzo J, Effenberger KA, Sierra J, Ying L, Barraza SJ, Li W, Trotta CR, Wang J, Zhao R. The U1 snRNP protein U1C and Helix H of U1 snRNA are critical for small molecule splicing modulator function. bioRxiv. 2025 Aug 23. PMID: 40894576.
      View in: PubMed
    3. Shi S, Li X, Alderman C, Wick L, Huang W, Foulon N, Zhang L, Rossi J, Hu W, Cui S, Zheng H, Taylor DJ, Ford HL, Zhao R. Cryo-EM structures reveal the PP2A-B55a and Eya3 interaction that can be disrupted by a peptide inhibitor. J Biol Chem. 2025 Jul; 301(7):110287. PMID: 40414499.
      View in: PubMed
    4. Ma S, Shi S, Hu X, Zhao Y, Yang B, Liao M, Lu B, Xu Q. From basic to clinical translation: advances and perspectives of photodynamic nanodrugs. Front Pharmacol. 2025; 16:1606372. PMID: 40463906.
      View in: PubMed
    5. Shi S, Li X, Alderman C, Huang W, Wick L, Foulon N, Rossi J, Hu W, Cui S, Zheng H, Taylor DJ, Ford HL, Zhao R. Cryo-EM structures reveal the PP2A-B55a and Eya3 interaction that can be disrupted by a peptide inhibitor. bioRxiv. 2025 Feb 05. PMID: 39975004.
      View in: PubMed
    6. Shi S, Zhao R. RNA-Binding Proteins (RBPs) and Circular RNA Biogenesis. Adv Exp Med Biol. 2025; 1485:117-130. PMID: 40886273.
      View in: PubMed
    7. Jia H, Li X, Zhuang Y, Wu Y, Shi S, Sun Q, He F, Liang S, Wang J, Draz MS, Xie X, Zhang J, Yang Q, Ruan Z. Neural network-based predictions of antimicrobial resistance phenotypes in multidrug-resistant Acinetobacter baumannii from whole genome sequencing and gene expression. Antimicrob Agents Chemother. 2024 12 05; 68(12):e0144624. PMID: 39540735.
      View in: PubMed
    8. Shi S, Zhao R. How does the spliceosome dismantle itself? Nature. 2024 08; 632(8024):261-262. PMID: 39048865.
      View in: PubMed
    9. Chalivendra S, Shi S, Li X, Kuang Z, Giovinazzo J, Zhang L, Rossi J, Wang J, Saviola AJ, Welty R, Liu S, Vaeth KF, Zhou ZH, Hansen KC, Taliaferro JM, Zhao R. Selected humanization of yeast U1 snRNP leads to global suppression of pre-mRNA splicing and mitochondrial dysfunction in the budding yeast. RNA. 2024 07 16; 30(8):1070-1088. PMID: 38688558.
      View in: PubMed
    10. Chalivendra S, Shi S, Li X, Kuang Z, Giovinazzo J, Zhang L, Rossi J, Saviola AJ, Wang J, Welty R, Liu S, Vaeth K, Zhou ZH, Hansen KC, Taliaferro JM, Zhao R. Selected humanization of yeast U1 snRNP leads to global suppression of pre-mRNA splicing and mitochondrial dysfunction in the budding yeast. bioRxiv. 2023 Dec 15. PMID: 38168357.
      View in: PubMed
    11. Mann N, Mzoughi S, Schneider R, Kühl SJ, Schanze D, Klämbt V, Lovric S, Mao Y, Shi S, Tan W, Kühl M, Onuchic-Whitford AC, Treimer E, Kitzler TM, Kause F, Schumann S, Nakayama M, Buerger F, Shril S, van der Ven AT, Majmundar AJ, Holton KM, Kolb A, Braun DA, Rao J, Jobst-Schwan T, Mildenberger E, Lennert T, Kuechler A, Wieczorek D, Gross O, Ermisch-Omran B, Werberger A, Skalej M, Janecke AR, Soliman NA, Mane SM, Lifton RP, Kadlec J, Guccione E, Schmeisser MJ, Zenker M, Hildebrandt F. Mutations in PRDM15 Are a Novel Cause of Galloway-Mowat Syndrome. J Am Soc Nephrol. 2021 03; 32(3):580-596. PMID: 33593823.
      View in: PubMed
    12. Shi S, Li X, Zhao R. Detecting circRNA in purified spliceosomal P complex. Methods. 2021 12; 196:30-35. PMID: 33577981.
      View in: PubMed
    13. Li X, Liu S, Zhang L, Issaian A, Hill RC, Espinosa S, Shi S, Cui Y, Kappel K, Das R, Hansen KC, Zhou ZH, Zhao R. A unified mechanism for intron and exon definition and back-splicing. Nature. 2019 09; 573(7774):375-380. PMID: 31485080.
      View in: PubMed
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