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Edward Boyi Chuong

TitleAsst Professor
InstitutionUniversity of Colorado Boulder
DepartmentBiology-MCD Instruction

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Buttler CA, Ramirez D, Dowell RD, Chuong EB. An intronic LINE-1 regulates IFNAR1 expression in human immune cells. Mob DNA. 2023 Nov 30; 14(1):20. PMID: 38037122.
      View in: PubMed
    2. Arkhipova IR, Burns KH, Chiappinelli KB, Chuong EB, Goubert C, Guarn? A, Larracuente AM, Lee EA, Levin HL. Meeting report: transposable elements at the crossroads of evolution, health and disease 2023. Mob DNA. 2023 Nov 27; 14(1):19. PMID: 38012685.
      View in: PubMed
    3. Pasquesi GIM, Allen H, Ivancevic A, Barbachano-Guerrero A, Joyner O, Guo K, Simpson DM, Gapin K, Horton I, Nguyen L, Yang Q, Warren CJ, Florea LD, Bitler BG, Santiago ML, Sawyer SL, Chuong EB. Regulation of human interferon signaling by transposon exonization. bioRxiv. 2023 Sep 15. PMID: 37745311.
      View in: PubMed
    4. Horton I, Kelly CJ, Dziulko A, Simpson DM, Chuong EB. Mouse B2 SINE elements function as IFN-inducible enhancers. Elife. 2023 05 09; 12. PMID: 37158599.
      View in: PubMed
    5. Nguyen LL, Watson ZL, Ortega R, Woodruff ER, Jordan KR, Iwanaga R, Yamamoto TM, Bailey CA, Jeong AD, Guntupalli SR, Behbakht K, Gbaja V, Arnoult N, Chuong EB, Bitler BG. Combinatory EHMT and PARP inhibition induces an interferon response and a CD8 T cell-dependent tumor regression in PARP inhibitor-resistant models. bioRxiv. 2023 Feb 23. PMID: 36865165.
      View in: PubMed
    6. McMellen A, Yamamoto TM, Qamar L, Sanders BE, Nguyen LL, Ortiz Chavez D, Bapat J, Berning A, Post MD, Johnson J, Behbakht K, Nurmemmedov E, Chuong EB, Bitler BG. ATF6-Mediated Signaling Contributes to PARP Inhibitor Resistance in Ovarian Cancer. Mol Cancer Res. 2023 01 03; 21(1):3-13. PMID: 36149636.
      View in: PubMed
    7. Simpson DM, Chuong EB. Genetic Knockout of TE Insertions by CRISPR-Cas9. Methods Mol Biol. 2023; 2607:369-379. PMID: 36449171.
      View in: PubMed
    8. Pasquesi GIM, Kelly CJ, Ordonez AD, Chuong EB. Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells. Mob DNA. 2022 Sep 06; 13(1):22. PMID: 36068622.
      View in: PubMed
    9. Kelly CJ, Chitko-McKown CG, Chuong EB. Ruminant-specific retrotransposons shape regulatory evolution of bovine immunity. Genome Res. 2022 Aug 25; 32(8):1474-1486. PMID: 35948370.
      View in: PubMed
    10. Perry BW, Gopalan SS, Pasquesi GIM, Schield DR, Westfall AK, Smith CF, Koludarov I, Chippindale PT, Pellegrino MW, Chuong EB, Mackessy SP, Castoe TA. Snake venom gene expression is coordinated by novel regulatory architecture and the integration of multiple co-opted vertebrate pathways. Genome Res. 2022 06; 32(6):1058-1073. PMID: 35649579.
      View in: PubMed
    11. Buttler CA, Chuong EB. Emerging roles for endogenous retroviruses in immune epigenetic regulation. Immunol Rev. 2022 01; 305(1):165-178. PMID: 34816452.
      View in: PubMed
    12. Cable J, Heard E, Hirose T, Prasanth KV, Chen LL, Henninger JE, Quinodoz SA, Spector DL, Diermeier SD, Porman AM, Kumar D, Feinberg MW, Shen X, Unfried JP, Johnson R, Chen CK, Wilusz JE, Lempradl A, McGeary SE, Wahba L, Pyle AM, Hargrove AE, Simon MD, Marcia M, Przanowska RK, Chang HY, Jaffrey SR, Contreras LM, Chen Q, Shi J, Mendell JT, He L, Song E, Rinn JL, Lalwani MK, Kalem MC, Chuong EB, Maquat LE, Liu X. Noncoding RNAs: biology and applications-a Keystone Symposia report. Ann N Y Acad Sci. 2021 12; 1506(1):118-141. PMID: 34791665.
      View in: PubMed
    13. Ivancevic A, Chuong EB. Transposable elements teach T cells new tricks. Proc Natl Acad Sci U S A. 2020 04 28; 117(17):9145-9147. PMID: 32312814.
      View in: PubMed
    14. Branco MR, Chuong EB. Crossroads between transposons and gene regulation. Philos Trans R Soc Lond B Biol Sci. 2020 03 30; 375(1795):20190330. PMID: 32075561.
      View in: PubMed
    15. Raviram R, Rocha PP, Luo VM, Swanzey E, Miraldi ER, Chuong EB, Feschotte C, Bonneau R, Skok JA. Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate. Genome Biol. 2018 12 13; 19(1):216. PMID: 30541598.
      View in: PubMed
    16. Chuong EB. The placenta goes viral: Retroviruses control gene expression in pregnancy. PLoS Biol. 2018 10; 16(10):e3000028. PMID: 30300353.
      View in: PubMed
    17. Guernsey MW, Chuong EB, Cornelis G, Renfree MB, Baker JC. Molecular conservation of marsupial and eutherian placentation and lactation. Elife. 2017 09 12; 6. PMID: 28895534.
      View in: PubMed
    18. Chuong EB, Elde NC, Feschotte C. Regulatory activities of transposable elements: from conflicts to benefits. Nat Rev Genet. 2017 02; 18(2):71-86. PMID: 27867194.
      View in: PubMed
    19. Yu Y, Yarrington RM, Chuong EB, Elde NC, Stillman DJ. Disruption of promoter memory by synthesis of a long noncoding RNA. Proc Natl Acad Sci U S A. 2016 08 23; 113(34):9575-80. PMID: 27506791.
      View in: PubMed
    20. Chuong EB, Elde NC, Feschotte C. Regulatory evolution of innate immunity through co-option of endogenous retroviruses. Science. 2016 Mar 04; 351(6277):1083-7. PMID: 26941318.
      View in: PubMed
    21. Hannibal RL, Chuong EB, Rivera-Mulia JC, Gilbert DM, Valouev A, Baker JC. Copy number variation is a fundamental aspect of the placental genome. PLoS Genet. 2014 May; 10(5):e1004290. PMID: 24785991.
      View in: PubMed
    22. Chuong EB, Feschotte C. Evolution. Transposons up the dosage. Science. 2013 Nov 15; 342(6160):812-3. PMID: 24233714.
      View in: PubMed
    23. Wills AE, Gupta R, Chuong E, Baker JC. Chromatin immunoprecipitation and deep sequencing in Xenopus tropicalis and Xenopus laevis. Methods. 2014 Apr 01; 66(3):410-21. PMID: 24064036.
      View in: PubMed
    24. Chuong EB, Hannibal RL, Green SL, Baker JC. Evolutionary perspectives into placental biology and disease. Appl Transl Genom. 2013 Dec 01; 2:64-69. PMID: 27896057.
      View in: PubMed
    25. Chuong EB. Retroviruses facilitate the rapid evolution of the mammalian placenta. Bioessays. 2013 Oct; 35(10):853-61. PMID: 23873343.
      View in: PubMed
    26. Chuong EB, Rumi MA, Soares MJ, Baker JC. Endogenous retroviruses function as species-specific enhancer elements in the placenta. Nat Genet. 2013 Mar; 45(3):325-9. PMID: 23396136.
      View in: PubMed
    27. Ackerman WE, Bulmer JN, Carter AM, Chaillet JR, Chamley L, Chen CP, Chuong EB, Coleman SJ, Collet GP, Croy BA, de Mestre AM, Dickinson H, Ducray J, Enders AC, Fogarty NM, Gauster M, Golos T, Haider S, Heazell AE, Holland OJ, Huppertz B, Husebekk A, John RM, Johnsen GM, Jones CJ, Kalionis B, K?nig J, Lorenzon AR, Moffett A, Moreira de Mello JC, Nuzzo AM, Parham P, Parolini O, Petroff MG, Pidoux G, Ram?rez-Pinilla MP, Robinson WP, Rolfo A, Sadovsky Y, Soma H, Southcombe JH, Tilburgs T, Lash GE. IFPA Meeting 2011 workshop report III: Placental immunology; epigenetic and microRNA-dependent gene regulation; comparative placentation; trophoblast differentiation; stem cells. Placenta. 2012 Feb; 33 Suppl:S15-22. PMID: 22154501.
      View in: PubMed
    28. Yoon SJ, Wills AE, Chuong E, Gupta R, Baker JC. HEB and E2A function as SMAD/FOXH1 cofactors. Genes Dev. 2011 Aug 01; 25(15):1654-61. PMID: 21828274.
      View in: PubMed
    29. Kim SW, Yoon SJ, Chuong E, Oyolu C, Wills AE, Gupta R, Baker J. Chromatin and transcriptional signatures for Nodal signaling during endoderm formation in hESCs. Dev Biol. 2011 Sep 15; 357(2):492-504. PMID: 21741376.
      View in: PubMed
    30. Chuong EB, Tong W, Hoekstra HE. Maternal-fetal conflict: rapidly evolving proteins in the rodent placenta. Mol Biol Evol. 2010 Jun; 27(6):1221-5. PMID: 20123797.
      View in: PubMed
    31. Turner LM, Chuong EB, Hoekstra HE. Comparative analysis of testis protein evolution in rodents. Genetics. 2008 Aug; 179(4):2075-89. PMID: 18689890.
      View in: PubMed
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