 Hai Lin
| Title | Professor |
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| Institution | University of Colorado Denver - Denver Campus |
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| Department | CLAS-Chemistry |
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| Phone | 303/315-7656 |
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| Title | Chair |
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| Institution | University of Colorado Denver - Denver Campus |
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| Department | CLAS-Chemistry |
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 Bibliographic
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Chon NL, Tran S, Miller CS, Lin H, Knight JD. A conserved electrostatic membrane-binding surface in synaptotagmin-like proteins revealed using molecular phylogenetic analysis and homology modeling. Protein Sci. 2024 Jan; 33(1):e4850. PMID: 38038838.
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Tran AL, Guidez EB, Lin H. Adaptive-Partitioning Multilayer Dynamics Simulations: 2. Implementations of the Permuted and Interpolated Adaptive-Partitioning Gradients. J Phys Chem A. 2023 Dec 07; 127(48):10320-10333. PMID: 38058156.
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Chon NL, Tran S, Miller CS, Lin H, Knight JD. A Conserved Electrostatic Membrane-Binding Surface in Synaptotagmin-Like Proteins Revealed Using Molecular Phylogenetic Analysis and Homology Modeling. bioRxiv. 2023 Oct 29. PMID: 37502952.
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Chon NL, Schultz NJ, Zheng H, Lin H. Anion Pathways in the NarK Nitrate/Nitrite Exchanger. J Chem Inf Model. 2023 08 28; 63(16):5142-5152. PMID: 37585651.
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Talachutla S, Bhat S, Duster AW, Lin H. Improved Indicator Algorithms for Tracking a Hydrated Proton as A Local Structural Defect in Grotthuss Diffusion in Aqueous Solutions. Chem Phys Lett. 2021 Dec; 784. PMID: 34707321.
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Mato J, Duster AW, Guidez EB, Lin H. Adaptive-Partitioning Multilayer Dynamics Simulations: 1. On-the-Fly Switch between Two Quantum Levels of Theory. J Chem Theory Comput. 2021 Sep 14; 17(9):5456-5465. PMID: 34448578.
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Alnaas AA, Watson-Siriboe A, Tran S, Negussie M, Henderson JA, Osterberg JR, Chon NL, Harrott BM, Oviedo J, Lyakhova T, Michel C, Reisdorph N, Reisdorph R, Shearn CT, Lin H, Knight JD. Multivalent lipid targeting by the calcium-independent C2A domain of synaptotagmin-like protein 4/granuphilin. J Biol Chem. 2021 Jan-Jun; 296:100159. PMID: 33277360.
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Duster AW, Lin H. Riding elevators into and out of cells. Elife. 2020 10 13; 9. PMID: 33047673.
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Duster AW, Lin H. Tracking Proton Transfer through Titratable Amino Acid Side Chains in Adaptive QM/MM Simulations. J Chem Theory Comput. 2019 Nov 12; 15(11):5794-5809. PMID: 31553601.
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Duster AW, Garza CM, Aydintug BO, Negussie MB, Lin H. Adaptive Partitioning QM/MM for Molecular Dynamics Simulations: 6. Proton Transport through a Biological Channel. J Chem Theory Comput. 2019 Feb 12; 15(2):892-905. PMID: 30642175.
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Duster AW, Wang CH, Lin H. Adaptive QM/MM for Molecular Dynamics Simulations: 5. On the Energy-Conserved Permuted Adaptive-Partitioning Schemes. Molecules. 2018 Aug 28; 23(9). PMID: 30154373.
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Wang CH, Duster AW, Aydintug BO, Zarecki MG, Lin H. Chloride Ion Transport by the E. coli CLC Cl-/H+ Antiporter: A Combined Quantum-Mechanical and Molecular-Mechanical Study. Front Chem. 2018; 6:62. PMID: 29594103.
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Duster AW, Lin H. Restrained Proton Indicator in Combined Quantum-Mechanics/Molecular-Mechanics Dynamics Simulations of Proton Transfer through a Carbon Nanotube. J Phys Chem B. 2017 09 14; 121(36):8585-8592. PMID: 28820594.
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Wang M, Gorham JM, Killgore JP, Omidvar M, Lin H, DelRio FW, Cox LM, Zhang Z, Ding Y. Formation of a Crack-Free, Hybrid Skin Layer with Tunable Surface Topography and Improved Gas Permeation Selectivity on Elastomers Using Gel-Liquid Infiltration Polymerization. ACS Appl Mater Interfaces. 2017 Aug 23; 9(33):28100-28106. PMID: 28758394.
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Osterberg JR, Chon NL, Boo A, Maynard FA, Lin H, Knight JD. Membrane Docking of the Synaptotagmin 7 C2A Domain: Electron Paramagnetic Resonance Measurements Show Contributions from Two Membrane Binding Loops. Biochemistry. 2015 Sep 22; 54(37):5684-95. PMID: 26322740.
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Chon NL, Osterberg JR, Henderson J, Khan HM, Reuter N, Knight JD, Lin H. Membrane Docking of the Synaptotagmin 7 C2A Domain: Computation Reveals Interplay between Electrostatic and Hydrophobic Contributions. Biochemistry. 2015 Sep 22; 54(37):5696-711. PMID: 26333120.
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Pezeshki S, Lin H. Adaptive-partitioning QM/MM for molecular dynamics simulations: 4. Proton hopping in bulk water. J Chem Theory Comput. 2015 Jun 09; 11(6):2398-411. PMID: 26575540.
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Pezeshki S, Davis C, Heyden A, Lin H. Adaptive-Partitioning QM/MM Dynamics Simulations: 3. Solvent Molecules Entering and Leaving Protein Binding Sites. J Chem Theory Comput. 2014 Nov 11; 10(11):4765-76. PMID: 26584363.
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Pezeshki S, Lin H. Molecular dynamics simulations of ion solvation by flexible-boundary QM/MM: on-the-fly partial charge transfer between QM and MM subsystems. J Comput Chem. 2014 Sep 15; 35(24):1778-88. PMID: 25056247.
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Damrauer R, Lin H, Damrauer NH. Computational studies of carbodiimide rings. J Org Chem. 2014 May 02; 79(9):3781-8. PMID: 24716711.
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Church J, Pezeshki S, Davis C, Lin H. Charge transfer and polarization for chloride ions bound in ClC transport proteins: natural bond orbital and energy decomposition analyses. J Phys Chem B. 2013 Dec 19; 117(50):16029-43. PMID: 24261529.
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Pezeshki S, Lin H. Adaptive-Partitioning Redistributed Charge and Dipole Schemes for QM/MM Dynamics Simulations: On-the-fly Relocation of Boundaries that Pass through Covalent Bonds. J Chem Theory Comput. 2011 Nov 08; 7(11):3625-34. PMID: 26598259.
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Ader L, Jones DN, Lin H. Alcohol binding to the odorant binding protein LUSH: multiple factors affecting binding affinities. Biochemistry. 2010 Jul 27; 49(29):6136-42. PMID: 20550105.
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Zhang Y, Lin H. Quantum tunneling in testosterone 6beta-hydroxylation by cytochrome P450: reaction dynamics calculations employing multiconfiguration molecular-mechanical potential energy surfaces. J Phys Chem A. 2009 Oct 29; 113(43):11501-8. PMID: 19480428.
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Zhang Y, Lin H. Flexible-Boundary Quantum-Mechanical/Molecular-Mechanical Calculations:? Partial Charge Transfer between the Quantum-Mechanical and Molecular-Mechanical Subsystems. J Chem Theory Comput. 2008 Mar; 4(3):414-25. PMID: 26620782.
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Zhang Y, Lin H, Truhlar DG. Self-Consistent Polarization of the Boundary in the Redistributed Charge and Dipole Scheme for Combined Quantum-Mechanical and Molecular-Mechanical Calculations. J Chem Theory Comput. 2007 Jul; 3(4):1378-98. PMID: 26633210.
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Lin H, Zhao Y, Tishchenko O, Truhlar DG. Multiconfiguration Molecular Mechanics Based on Combined Quantum Mechanical and Molecular Mechanical Calculations. J Chem Theory Comput. 2006 Sep; 2(5):1237-54. PMID: 26626833.
This graph shows the total number of publications by year, by first, middle/unknown, or last author.
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| Year | Publications |
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| 2006 | 1 | | 2007 | 1 | | 2008 | 1 | | 2009 | 1 | | 2010 | 1 | | 2011 | 1 | | 2013 | 1 | | 2014 | 3 | | 2015 | 3 | | 2017 | 2 | | 2018 | 2 | | 2019 | 2 | | 2020 | 2 | | 2021 | 2 | | 2023 | 3 | | 2024 | 1 |
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