Colorado PROFILES, The Colorado Clinical and Translational Sciences Institute (CCTSI)
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Farnoush Banaei-Kashani

TitleAssociate Professor
InstitutionUniversity of Colorado Denver - Denver Campus
DepartmentCEDC-Computer SC & Engineering
Phone303/315-0116
    Other Positions
    TitleAssociate Professor
    InstitutionUniversity of Colorado Denver - Denver Campus
    DepartmentCEDC-Computer SC & Engineering

    TitleAssociate Professor
    InstitutionUniversity of Colorado Denver - Denver Campus
    DepartmentCLAS-Mathematics


    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Salyers AJ, Bull S, Silvasstar J, Howell K, Wright T, Banaei-Kashani F. Building and Beta-Testing Be Well Buddy Chatbot, a Secure, Credible and Trustworthy AI Chatbot That Will Not Misinform, Hallucinate or Stigmatize Substance Use Disorder: Development and Usability Study. JMIR Hum Factors. 2025 May 07; 12:e69144. PMID: 40334652.
      View in: PubMed
    2. Liu W, Pratte KA, Castaldi PJ, Hersh C, Bowler RP, Banaei-Kashani F, Kechris KJ. A generalized higher-order correlation analysis framework for multi-omics network inference. PLoS Comput Biol. 2025 Apr; 21(4):e1011842. PMID: 40228208.
      View in: PubMed
    3. Raghebi Z, Banaei-Kashani F. ActiveReach: an active learning framework for approximate reachability query answering in large-scale graphs. Front Big Data. 2024; 7:1427104. PMID: 39629105.
      View in: PubMed
    4. Konigsberg IR, Vu T, Liu W, Litkowski EM, Pratte KA, Vargas LB, Gilmore N, Abdel-Hafiz M, Manichaikul A, Cho MH, Hersh CP, DeMeo DL, Banaei-Kashani F, Bowler RP, Lange LA, Kechris KJ. Proteomic networks and related genetic variants associated with smoking and chronic obstructive pulmonary disease. BMC Genomics. 2024 Sep 02; 25(1):825. PMID: 39223457.
      View in: PubMed
    5. Konigsberg IR, Vu T, Liu W, Litkowski EM, Pratte KA, Vargas LB, Gilmore N, Abdel-Hafiz M, Manichaikul AW, Cho MH, Hersh CP, DeMeo DL, Banaei-Kashani F, Bowler RP, Lange LA, Kechris KJ. Proteomic Networks and Related Genetic Variants Associated with Smoking and Chronic Obstructive Pulmonary Disease. medRxiv. 2024 Feb 28. PMID: 38464285.
      View in: PubMed
    6. Liu W, Pratte KA, Castaldi PJ, Hersh C, Bowler RP, Banaei-Kashani F, Kechris KJ. A Generalized Higher-order Correlation Analysis Framework for Multi-Omics Network Inference. bioRxiv. 2024 Jan 25. PMID: 38328226.
      View in: PubMed
    7. Hill AC, Guo C, Litkowski EM, Manichaikul AW, Yu B, Konigsberg IR, Gorbet BA, Lange LA, Pratte KA, Kechris KJ, DeCamp M, Coors M, Ortega VE, Rich SS, Rotter JI, Gerzsten RE, Clish CB, Curtis JL, Hu X, Obeidat ME, Morris M, Loureiro J, Ngo D, O'Neal WK, Meyers DA, Bleecker ER, Hobbs BD, Cho MH, Banaei-Kashani F, Bowler RP. Large scale proteomic studies create novel privacy considerations. Sci Rep. 2023 06 07; 13(1):9254. PMID: 37286633.
      View in: PubMed
    8. Barrett CD, Suzuki Y, Hussein S, Garg L, Tumolo A, Sandhu A, West JJ, Zipse M, Aleong R, Varosy P, Tzou WS, Banaei-Kashani F, Rosenberg MA. Evaluation of Quantitative Decision-Making for Rhythm Management of Atrial Fibrillation Using Tabular Q-Learning. J Am Heart Assoc. 2023 05 02; 12(9):e028483. PMID: 37119087.
      View in: PubMed
    9. Zhuang Y, Xing F, Ghosh D, Hobbs BD, Hersh CP, Banaei-Kashani F, Bowler RP, Kechris K. Deep learning on graphs for multi-omics classification of COPD. PLoS One. 2023; 18(4):e0284563. PMID: 37083575.
      View in: PubMed
    10. Vu T, Litkowski EM, Liu W, Pratte KA, Lange L, Bowler RP, Banaei-Kashani F, Kechris KJ. NetSHy: network summarization via a hybrid approach leveraging topological properties. Bioinformatics. 2023 01 01; 39(1). PMID: 36548341.
      View in: PubMed
    11. Hussein S, Vu T, Lange L, Bowler RP, Kechris KJ, Banaei-Kashani F. Effective Subject Representation based on Multi-omics Disease Networks using Graph Embedding. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2022 Dec; 2022:1911-1918. PMID: 36776768.
      View in: PubMed
    12. Konz L, Hill A, Banaei-Kashani F. ST-DeepGait: A Spatiotemporal Deep Learning Model for Human Gait Recognition. Sensors (Basel). 2022 Oct 21; 22(20). PMID: 36298427.
      View in: PubMed
    13. Stacy J, Kim R, Barrett C, Sekar B, Simon S, Banaei-Kashani F, Rosenberg MA. Qualitative Evaluation of an Artificial Intelligence-Based Clinical Decision Support System to Guide Rhythm Management of Atrial Fibrillation: Survey Study. JMIR Form Res. 2022 Aug 11; 6(8):e36443. PMID: 35969422.
      View in: PubMed
    14. Abdel-Hafiz M, Najafi M, Helmi S, Pratte KA, Zhuang Y, Liu W, Kechris KJ, Bowler RP, Lange L, Banaei-Kashani F. Significant Subgraph Detection in Multi-omics Networks for Disease Pathway Identification. Front Big Data. 2022; 5:894632. PMID: 35811829.
      View in: PubMed
    15. Mande A, Moore SL, Banaei-Kashani F, Echalier B, Bull S, Rosenberg MA. Assessment of a Mobile Health iPhone App for Semiautomated Self-management of Chronic Recurrent Medical Conditions Using an N-of-1 Trial Framework: Feasibility Pilot Study. JMIR Form Res. 2022 Apr 12; 6(4):e34827. PMID: 35412460.
      View in: PubMed
    16. Zhuang Y, Xing F, Ghosh D, Banaei-Kashani F, Bowler RP, Kechris K. An Augmented High-Dimensional Graphical Lasso Method to Incorporate Prior Biological Knowledge for Global Network Learning. Front Genet. 2021; 12:760299. PMID: 35154240.
      View in: PubMed
    17. Gillenwater LA, Helmi S, Stene E, Pratte KA, Zhuang Y, Schuyler RP, Lange L, Castaldi PJ, Hersh CP, Banaei-Kashani F, Bowler RP, Kechris KJ. Multi-omics subtyping pipeline for chronic obstructive pulmonary disease. PLoS One. 2021; 16(8):e0255337. PMID: 34432807.
      View in: PubMed
    18. Lusk R, Stene E, Banaei-Kashani F, Tabakoff B, Kechris K, Saba LM. Aptardi predicts polyadenylation sites in sample-specific transcriptomes using high-throughput RNA sequencing and DNA sequence. Nat Commun. 2021 03 12; 12(1):1652. PMID: 33712618.
      View in: PubMed
    19. Marzec L, Raghavan S, Banaei-Kashani F, Creasy S, Melanson EL, Lange L, Ghosh D, Rosenberg MA. Device-measured physical activity data for classification of patients with ventricular arrhythmia events: A pilot investigation. PLoS One. 2018; 13(10):e0206153. PMID: 30372463.
      View in: PubMed
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