Colorado PROFILES, The Colorado Clinical and Translational Sciences Institute (CCTSI)
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Thao Vu

TitleAssistant Research Professor
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentCSPH-Bio Info General Ops

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Ghosh T, Baxter RM, Seal S, Lui VG, Rudra P, Vu T, Hsieh EWY, Ghosh D. cytoKernel: robust kernel embeddings for assessing differential expression of single-cell data. Bioinformatics. 2025 Jul 01; 41(7). PMID: 40658464.
      View in: PubMed
    2. Schumacher DJ, Michelson C, Winn A, Henry D, O'Connor M, Li ST, Blair RJ, Velazquez-Campbell M, Kihlstrom MJ, Borman-Shoap E, Ponitz K, Salvador-Sison J, Kinnear B, Turner DA, Martini A, Burrows HL, Patel R, Newhall LM, Osborn R, Mallory M, Scheurer JM, Grant M, Myers RE, Griego EC, Kravtchenko S, Jain S, Vu T, Schwartz A. Graduating Residents' Readiness for Unsupervised Practice. Pediatrics. 2025 May 01; 155(5). PMID: 40199502.
      View in: PubMed
    3. Bernstein JS, Canon N, Schein CH, Braun W, Negi SS, Tchekmedyian R, Pozzoli M, Kim EH, Kulis MD, Vu T, Liu W, Chen X, Dreskin SC. Fine resolution of the N-terminal IgE-binding epitope of Ara h 2: Discovery of variants with enhanced IgE binding. J Allergy Clin Immunol. 2025 Aug; 156(2):385-393. PMID: 40311815.
      View in: PubMed
    4. Weinberg A, Vu T, Johnson MJ, Schmid DS, Levin MJ. The Reduced Immunogenicity of Zoster Vaccines in CMV-Seropositive Older Adults Correlates with T Cell Imprinting. Vaccines (Basel). 2025 Mar 22; 13(4). PMID: 40333195.
      View in: PubMed
    5. Bernstein JS, Vu T, Baloh CH, Huffaker MF, Du Toit G, Dreskin SC. Skin testing improves predictive value of midrange peanut-specific IgE and Ara h 2 levels in the LEAP study. J Allergy Clin Immunol Pract. 2025 Jun; 13(6):1478-1480.e2. PMID: 40081760.
      View in: PubMed
    6. Vu T, Godbole S, Carrette LLG, Maturin L, George O, Saba LM, Kechris K. Identification of Plasma Metabolites Responding to Oxycodone Exposure in Rats. Metabolites. 2025 Feb 04; 15(2). PMID: 39997720.
      View in: PubMed
    7. Little A, Zhao N, Mikhaylova A, Zhang A, Ling W, Thibord F, Johnson AD, Raffield LM, Curran JE, Blangero J, O'Connell JR, Xu H, Rotter JI, Rich SS, Rice KM, Chen MH, Reiner A, Kooperberg C, Vu T, Hou L, Fornage M, Loos RJF, Kenny E, Mathias R, Becker L, Smith AV, Boerwinkle E, Yu B, Thornton T, Wu MC. General Kernel Machine Methods for Multi-Omics Integration and Genome-Wide Association Testing With Related Individuals. Genet Epidemiol. 2025 Jan; 49(1):e22610. PMID: 39812506.
      View in: PubMed
    8. Dylla L, Higgins HM, Poisson SN, Vu T, Reisz JA, Herson PS, Monte A. Sex Differences in Tryptophan Metabolism via the Kynurenine Pathway in Acute Ischemic Stroke. Clin Ther. 2024 Dec; 46(12):960-966. PMID: 39603869.
      View in: PubMed
    9. Wrobel J, Soupir AC, Hayes MT, Peres LC, Vu T, Leroux A, Fridley BL. mxfda: a comprehensive toolkit for functional data analysis of single-cell spatial data. Bioinform Adv. 2024; 4(1):vbae155. PMID: 39552929.
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    10. Konigsberg IR, Vu T, Liu W, Litkowski EM, Pratte KA, Vargas LB, Gilmore N, Abdel-Hafiz M, Manichaikul A, Cho MH, Hersh CP, DeMeo DL, Banaei-Kashani F, Bowler RP, Lange LA, Kechris KJ. Proteomic networks and related genetic variants associated with smoking and chronic obstructive pulmonary disease. BMC Genomics. 2024 Sep 02; 25(1):825. PMID: 39223457.
      View in: PubMed
    11. Liu W, Vu T, R Konigsberg I, A Pratte K, Zhuang Y, Kechris KJ. Smccnet 2.0: a comprehensive tool for multi-omics network inference with shiny visualization. BMC Bioinformatics. 2024 Aug 24; 25(1):276. PMID: 39179997.
      View in: PubMed
    12. Ghosh T, Baxter RM, Seal S, Lui VG, Rudra P, Vu T, Hsieh EW, Ghosh D. cytoKernel: Robust kernel embeddings for assessing differential expression of single cell data. bioRxiv. 2024 Aug 19. PMID: 39229233.
      View in: PubMed
    13. Weinberg A, Johnson M, Crotteau M, Ghosh D, Vu T, Levin MJ. Trained Immunity Generated by the Recombinant Zoster Vaccine. Res Sq. 2024 Jul 10. PMID: 39041035.
      View in: PubMed
    14. Dylla L, Higgins HM, Stephenson D, Reisz JA, Vu T, Poisson SN, Herson PS, Monte AA. Sex Differences in the Blood Metabolome During Acute Response to Ischemic Stroke. J Womens Health (Larchmt). 2024 Oct; 33(10):1378-1384. PMID: 38946610.
      View in: PubMed
    15. Liu W, Vu T, Konigsberg I, Pratte K, Zhuang Y, Kechris K. SmCCNet 2.0: A Comprehensive Tool for Multi-omics Network Inference with Shiny Visualization. bioRxiv. 2024 Apr 07. PMID: 38045372.
      View in: PubMed
    16. Wylie KP, Vu T, Legget KT, Tregellas JR. Hierarchical Principal Components for Data-Driven Multiresolution fMRI Analyses. Brain Sci. 2024 Mar 28; 14(4). PMID: 38671978.
      View in: PubMed
    17. Konigsberg IR, Vu T, Liu W, Litkowski EM, Pratte KA, Vargas LB, Gilmore N, Abdel-Hafiz M, Manichaikul AW, Cho MH, Hersh CP, DeMeo DL, Banaei-Kashani F, Bowler RP, Lange LA, Kechris KJ. Proteomic Networks and Related Genetic Variants Associated with Smoking and Chronic Obstructive Pulmonary Disease. medRxiv. 2024 Feb 28. PMID: 38464285.
      View in: PubMed
    18. Seal S, Neelon B, Angel PM, O'Quinn EC, Hill E, Vu T, Ghosh D, Mehta AS, Wallace K, Alekseyenko AV. SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA. J Proteome Res. 2024 04 05; 23(4):1131-1143. PMID: 38417823.
      View in: PubMed
    19. Vu T, Seal S, Ghosh T, Ahmadian M, Wrobel J, Ghosh D. FunSpace: A functional and spatial analytic approach to cell imaging data using entropy measures. PLoS Comput Biol. 2023 Sep; 19(9):e1011490. PMID: 37756338.
      View in: PubMed
    20. Seal S, Neelon B, Angel P, O'Quinn EC, Hill E, Vu T, Ghosh D, Mehta A, Wallace K, Alekseyenko AV. SpaceANOVA: Spatial co-occurrence analysis of cell types in multiplex imaging data using point process and functional ANOVA. bioRxiv. 2023 Jul 09. PMID: 37461579.
      View in: PubMed
    21. Vu T, Litkowski EM, Liu W, Pratte KA, Lange L, Bowler RP, Banaei-Kashani F, Kechris KJ. NetSHy: network summarization via a hybrid approach leveraging topological properties. Bioinformatics. 2023 01 01; 39(1). PMID: 36548341.
      View in: PubMed
    22. Vu T, Xu Y, Qiu Y, Powers R. Shifting-corrected regularized regression for 1H NMR metabolomics identification and quantification. Biostatistics. 2022 12 12; 24(1):140-160. PMID: 36514939.
      View in: PubMed
    23. Hussein S, Vu T, Lange L, Bowler RP, Kechris KJ, Banaei-Kashani F. Effective Subject Representation based on Multi-omics Disease Networks using Graph Embedding. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2022 Dec; 2022:1911-1918. PMID: 36776768.
      View in: PubMed
    24. Bhinderwala F, Vu T, Smith TG, Kosacki J, Marshall DD, Xu Y, Morton M, Powers R. Leveraging the HMBC to Facilitate Metabolite Identification. Anal Chem. 2022 11 29; 94(47):16308-16318. PMID: 36374521.
      View in: PubMed
    25. Vu T, Wrobel J, Bitler BG, Schenk EL, Jordan KR, Ghosh D. SPF: A spatial and functional data analytic approach to cell imaging data. PLoS Comput Biol. 2022 06; 18(6):e1009486. PMID: 35704658.
      View in: PubMed
    26. Seal S, Vu T, Ghosh T, Wrobel J, Ghosh D. DenVar: density-based variation analysis of multiplex imaging data. Bioinform Adv. 2022; 2(1):vbac039. PMID: 36699398.
      View in: PubMed
    27. Vu T, Siemek P, Bhinderwala F, Xu Y, Powers R. Evaluation of Multivariate Classification Models for Analyzing NMR Metabolomics Data. J Proteome Res. 2019 09 06; 18(9):3282-3294. PMID: 31382745.
      View in: PubMed
    28. D'Souza R, Pinto NA, Phuong NL, Higgins PG, Vu TN, Byun JH, Cho YL, Choi JR, Yong D. Phenotypic and Genotypic Characterization of Acinetobacter spp. Panel Strains: A Cornerstone to Facilitate Antimicrobial Development. Front Microbiol. 2019; 10:559. PMID: 30972044.
      View in: PubMed
    29. Vu T, Riekeberg E, Qiu Y, Powers R. Comparing normalization methods and the impact of noise. Metabolomics. 2018 08 10; 14(8):108. PMID: 30830388.
      View in: PubMed
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