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Jayashree A Kalpathy-Cramer

TitleProfessor
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM-OP General Operations

    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Lim-Fat MJ, Iorgulescu JB, Rahman R, Bhave V, Muzikansky A, Woodward E, Whorral S, Allen M, Touat M, Li X, Xy G, Patel J, Gerstner ER, Kalpathy-Cramer J, Youssef G, Chukwueke U, McFaline-Figueroa JR, Nayak L, Lee EQ, Reardon DA, Beroukhim R, Huang RY, Bi WL, Ligon KL, Wen PY. Clinical and Genomic Predictors of Adverse Events in Newly Diagnosed Glioblastoma. Clin Cancer Res. 2024 Apr 01; 30(7):1327-1337. PMID: 38252427.
      View in: PubMed
    2. de Sanjos? S, Perkins RB, Campos N, Inturrisi F, Egemen D, Befano B, Rodriguez AC, Jer?nimo J, Cheung LC, Desai K, Han P, Novetsky AP, Ukwuani A, Marcus J, Ahmed SR, Wentzensen N, Kalpathy-Cramer J, Schiffman M. Design of the HPV-automated visual evaluation (PAVE) study: Validating a novel cervical screening strategy. Elife. 2024 Jan 15; 12. PMID: 38224340.
      View in: PubMed
    3. Egemen D, Perkins RB, Cheung LC, Befano B, Rodriguez AC, Desai K, Lemay A, Ahmed SR, Antani S, Jeronimo J, Wentzensen N, Kalpathy-Cramer J, De Sanjose S, Schiffman M. Artificial intelligence-based image analysis in clinical testing: lessons from cervical cancer screening. J Natl Cancer Inst. 2024 01 10; 116(1):26-33. PMID: 37758250.
      View in: PubMed
    4. Li W, Partridge SC, Newitt DC, Steingrimsson J, Marques HS, Bolan PJ, Hirano M, Bearce BA, Kalpathy-Cramer J, Boss MA, Teng X, Zhang J, Cai J, Kontos D, Cohen EA, Mankowski WC, Liu M, Ha R, Pellicer-Valero OJ, Maier-Hein K, Rabinovici-Cohen S, Tlusty T, Ozery-Flato M, Parekh VS, Jacobs MA, Yan R, Sung K, Kazerouni AS, DiCarlo JC, Yankeelov TE, Chenevert TL, Hylton NM. Breast Multiparametric MRI for Prediction of Neoadjuvant Chemotherapy Response in Breast Cancer: The BMMR2 Challenge. Radiol Imaging Cancer. 2024 Jan; 6(1):e230033. PMID: 38180338.
      View in: PubMed
    5. Hoebel KV, Bridge CP, Ahmed S, Akintola O, Chung C, Huang RY, Johnson JM, Kim A, Ly KI, Chang K, Patel J, Pinho M, Batchelor TT, Rosen BR, Gerstner ER, Kalpathy-Cramer J. Expert-centered Evaluation of Deep Learning Algorithms for Brain Tumor Segmentation. Radiol Artif Intell. 2024 Jan; 6(1):e220231. PMID: 38197800.
      View in: PubMed
    6. Kim AE, Lou KW, Giobbie-Hurder A, Chang K, Gidwani M, Hoebel K, Patel JB, Cleveland MC, Singh P, Bridge CP, Ahmed SR, Bearce BA, Liu W, Fuster-Garcia E, Lee EQ, Lin NU, Overmoyer B, Wen PY, Nayak L, Cohen JV, Dietrich J, Eichler A, Heist R, Krop I, Lawrence D, Ligibel J, Tolaney S, Mayer E, Winer E, Perrino CM, Summers EJ, Mahar M, Oh K, Shih HA, Cahill DP, Rosen BR, Yen YF, Kalpathy-Cramer J, Martinez-Lage M, Sullivan RJ, Brastianos PK, Emblem KE, Gerstner ER. Abnormal vascular structure and function within brain metastases is linked to pembrolizumab resistance. Neuro Oncol. 2023 Dec 09. PMID: 38070147.
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    7. Ahmed SR, Befano B, Lemay A, Egemen D, Rodriguez AC, Angara S, Desai K, Jeronimo J, Antani S, Campos N, Inturrisi F, Perkins R, Kreimer A, Wentzensen N, Herrero R, Del Pino M, Quint W, de Sanjose S, Schiffman M, Kalpathy-Cramer J. Reproducible and clinically translatable deep neural networks for cervical screening. Sci Rep. 2023 12 08; 13(1):21772. PMID: 38066031.
      View in: PubMed
    8. Kontos D, Kalpathy-Cramer J. Breast Cancer Risk Assessment in the AI Era: The Importance of Model Validation in Ethnically Diverse Cohorts. Radiol Artif Intell. 2023 Nov; 5(6):e230462. PMID: 38074794.
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    9. Lycke KD, Kalpathy-Cramer J, Jeronimo J, de Sanjose S, Egemen D, Del Pino M, Marcus J, Schiffman M, Hammer A. Agreement on Lesion Presence and Location at Colposcopy. J Low Genit Tract Dis. 2024 Jan 01; 28(1):37-42. PMID: 37963327.
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    10. Hoebel KV, Bridge CP, Kim A, Gerstner ER, Ly IK, Deng F, DeSalvo MN, Diettrich J, Huang R, Huang SY, Pomerantz SR, Vagvala S, Rosen BR, Kalpathy-Cramer J. Not without Context-A Multiple Methods Study on Evaluation and Correction of Automated Brain Tumor Segmentations by Experts. Acad Radiol. 2023 Nov 09. PMID: 37951777.
      View in: PubMed
    11. de Sanjos? S, Perkins RB, Campos NG, Inturrisi F, Egemen D, Befano B, Rodriguez AC, Jer?nimo J, Cheung LC, Desai K, Han P, Novetsky AP, Ukwuani A, Marcus J, Ahmed SR, Wentzensen N, Kalpathy-Cramer J, Schiffman M. Design of the HPV-Automated Visual Evaluation (PAVE) Study: Validating a Novel Cervical Screening Strategy. medRxiv. 2023 Oct 23. PMID: 37693492.
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    12. Lin WC, Jordan BK, Scottoline B, Ostmo SR, Coyner AS, Singh P, Kalpathy-Cramer J, Erdogmus D, Chan RVP, Chiang MF, Campbell JP. Oxygenation Fluctuations Associated with Severe Retinopathy of Prematurity: Insights from a Multimodal Deep Learning Approach. Ophthalmol Sci. 2024 Mar-Apr; 4(2):100417. PMID: 38059124.
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    13. Arsava EM, Chang K, Tawakol A, Loggia ML, Goldstein JN, Brown J, Park KY, Singhal AB, Kalpathy-Cramer J, Sorensen AG, Rosen BR, Samuels MA, Ay H. Stroke-Related Visceral Alterations: A Voxel-Based Neuroanatomic Localization Study. Ann Neurol. 2023 12; 94(6):1155-1163. PMID: 37642641.
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    14. Tan TF, Thirunavukarasu AJ, Campbell JP, Keane PA, Pasquale LR, Abramoff MD, Kalpathy-Cramer J, Lum F, Kim JE, Baxter SL, Ting DSW. Generative Artificial Intelligence Through ChatGPT and Other Large Language Models in Ophthalmology: Clinical Applications and Challenges. Ophthalmol Sci. 2023 Dec; 3(4):100394. PMID: 37885755.
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    15. Nguyen TP, Young BK, Coyner A, Ostmo S, Chan RVP, Kalpathy-Cramer J, Chiang MF, Campbell JP. Discrepancies in Diagnosis of Treatment-Requiring Retinopathy of Prematurity. Ophthalmol Retina. 2024 Jan; 8(1):88-91. PMID: 37689182.
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    16. Lin HM, Colak E, Richards T, Kitamura FC, Prevedello LM, Talbott J, Ball RL, Gumeler E, Yeom KW, Hamghalam M, Simpson AL, Strika J, Bulja D, Angkurawaranon S, P?rez-Lara A, G?mez-Alonso MI, Ortiz Jim?nez J, Peoples JJ, Law M, Dogan H, Altinmakas E, Youssef A, Mahfouz Y, Kalpathy-Cramer J, Flanders AE. The RSNA Cervical Spine Fracture CT Dataset. Radiol Artif Intell. 2023 Sep; 5(5):e230034. PMID: 37795143.
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    17. Lorenzo G, Ahmed SR, Ii DAH, Vaughn B, Kalpathy-Cramer J, Solorio L, Yankeelov TE, Gomez H. Patient-specific, mechanistic models of tumor growth incorporating artificial intelligence and big data. ArXiv. 2023 Aug 28. PMID: 37693182.
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    18. Kim AE, Lou KW, Giobbie-Hurder A, Chang K, Gidwani M, Hoebel K, Patel JB, Cleveland MC, Singh P, Bridge CP, Ahmed SR, Bearce BA, Liu W, Fuster-Garcia E, Lee EQ, Lin NU, Overmoyer B, Wen PY, Nayak L, Cohen JV, Dietrich J, Eichler A, Heist R, Krop I, Lawrence D, Ligibel J, Tolaney S, Mayer E, Winer E, Perrino CM, Summers EJ, Mahar M, Oh K, Shih HA, Cahill DP, Rosen BR, Yen YF, Kalpathy-Cramer J, Martinez-Lage M, Sullivan RJ, Brastianos PK, Emblem KE, Gerstner ER. Structural and functional vascular dysfunction within brain metastases is linked to pembrolizumab inefficacy. bioRxiv. 2023 Aug 28. PMID: 37693537.
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    19. Bhandari SM, Singh P, Arun N, Sekimitsu S, Raghu V, Rauscher FG, Elze T, Horn K, Kirsten T, Scholz M, Segr? AV, Wiggs JL, Kalpathy-Cramer J, Zebardast N. Automated detection of genetic relatedness from fundus photographs using Siamese Neural Networks. medRxiv. 2023 Aug 23. PMID: 37662422.
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    20. Ly KI, Richardson LG, Liu M, Muzikansky A, Cardona J, Lou K, Beers AL, Chang K, Brown JM, Ma X, Reardon DA, Arrillaga-Romany IC, Forst DA, Jordan JT, Lee EQ, Dietrich J, Nayak L, Wen PY, Chukwueke U, Giobbie-Hurder A, Choi BD, Batchelor TT, Kalpathy-Cramer J, Curry WT, Gerstner ER. Bavituximab Decreases Immunosuppressive Myeloid-Derived Suppressor Cells in Newly Diagnosed Glioblastoma Patients. Clin Cancer Res. 2023 Aug 15; 29(16):3017-3025. PMID: 37327319.
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    21. Deng B, Gu H, Zhu H, Chang K, Hoebel KV, Patel JB, Kalpathy-Cramer J, Carp SA. FDU-Net: Deep Learning-Based Three-Dimensional Diffuse Optical Image Reconstruction. IEEE Trans Med Imaging. 2023 08; 42(8):2439-2450. PMID: 37028063.
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    22. Whitney HM, Baughan N, Myers KJ, Drukker K, Gichoya J, Bower B, Chen W, Gruszauskas N, Kalpathy-Cramer J, Koyejo S, S? RC, Sahiner B, Zhang Z, Giger ML. Longitudinal assessment of demographic representativeness in the Medical Imaging and Data Resource Center open data commons. J Med Imaging (Bellingham). 2023 Nov; 10(6):61105. PMID: 37469387.
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    23. Coyner AS, Singh P, Brown JM, Ostmo S, Chan RVP, Chiang MF, Kalpathy-Cramer J, Campbell JP. Association of Biomarker-Based Artificial Intelligence With Risk of Racial Bias in Retinal Images. JAMA Ophthalmol. 2023 06 01; 141(6):543-552. PMID: 37140902.
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    24. Young BK, Cole ED, Shah PK, Ostmo S, Subramaniam P, Venkatapathy N, Tsai ASH, Coyner AS, Gupta A, Singh P, Chiang MF, Kalpathy-Cramer J, Chan RVP, Campbell JP. Efficacy of Smartphone-Based Telescreening for Retinopathy of Prematurity With and Without Artificial Intelligence in India. JAMA Ophthalmol. 2023 06 01; 141(6):582-588. PMID: 37166816.
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    25. Jang I, Hoffmann M, Singh N, Balbastre Y, Chen L, Rockenbach MABC, Dalca A, Aganj I, Kalpathy-Cramer J, Fischl B, Frost R. Clinical evaluation of k-space correlation informed motion artifact detection in segmented multi-slice MRI. Proc Int Soc Magn Reson Med Sci Meet Exhib Int Soc Magn Reson Med Sci Meet Exhib. 2023 Jun; 2023. PMID: 37565069.
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    26. AlRyalat SA, Singh P, Kalpathy-Cramer J, Kahook MY. Artificial Intelligence and Glaucoma: Going Back to Basics. Clin Ophthalmol. 2023; 17:1525-1530. PMID: 37284059.
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    27. Yang E, Li MD, Raghavan S, Deng F, Lang M, Succi MD, Huang AJ, Kalpathy-Cramer J. Transformer versus traditional natural language processing: how much data is enough for automated radiology report classification? Br J Radiol. 2023 Sep; 96(1149):20220769. PMID: 37162253.
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    28. Cox M, Panagides JC, Di Capua J, Dua A, Kalva S, Kalpathy-Cramer J, Daye D. An interpretable machine learning model for the prevention of contrast-induced nephropathy in patients undergoing lower extremity endovascular interventions for peripheral arterial disease. Clin Imaging. 2023 Sep; 101:1-7. PMID: 37247523.
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    29. Drukker K, Chen W, Gichoya J, Gruszauskas N, Kalpathy-Cramer J, Koyejo S, Myers K, S? RC, Sahiner B, Whitney H, Zhang Z, Giger M. Toward fairness in artificial intelligence for medical image analysis: identification and mitigation of potential biases in the roadmap from data collection to model deployment. J Med Imaging (Bellingham). 2023 Nov; 10(6):061104. PMID: 37125409.
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    30. Perkins RB, Smith DL, Jeronimo J, Campos NG, Gage JC, Hansen N, Rodriguez AC, Cheung LC, Egemen D, Befano B, Novetsky AP, Martins S, Kalpathy-Cramer J, Inturrisi F, Ahmed SR, Marcus J, Wentzensen N, de Sanjose S, Schiffman M. Use of risk-based cervical screening programs in resource-limited settings. Cancer Epidemiol. 2023 06; 84:102369. PMID: 37105017.
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    31. deCampos-Stairiker MA, Coyner AS, Gupta A, Oh M, Shah PK, Subramanian P, Venkatapathy N, Singh P, Kalpathy-Cramer J, Chiang MF, Chan RVP, Campbell JP. Epidemiologic Evaluation of Retinopathy of Prematurity Severity in a Large Telemedicine Program in India Using Artificial Intelligence. Ophthalmology. 2023 08; 130(8):837-843. PMID: 37030453.
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    32. Lauer A, Speroni SL, Choi M, Da X, Duncan C, McCarthy S, Krishnan V, Lusk CA, Rohde D, Hansen MB, Kalpathy-Cramer J, Loes DJ, Caruso PA, Williams DA, Mouridsen K, Emblem KE, Eichler FS, Musolino PL. Hematopoietic stem-cell gene therapy is associated with restored white matter microvascular function in cerebral adrenoleukodystrophy. Nat Commun. 2023 04 05; 14(1):1900. PMID: 37019892.
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    33. Gupta S, Kumar S, Chang K, Lu C, Singh P, Kalpathy-Cramer J. Collaborative Privacy-preserving Approaches for Distributed Deep Learning Using Multi-Institutional Data. Radiographics. 2023 04; 43(4):e220107. PMID: 36862082.
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    34. Ahmed SR, Befano B, Lemay A, Egemen D, Rodriguez AC, Angara S, Desai K, Jeronimo J, Antani S, Campos N, Inturrisi F, Perkins R, Kreimer A, Wentzensen N, Herrero R, Del Pino M, Quint W, de Sanjose S, Schiffman M, Kalpathy-Cramer J. REPRODUCIBLE AND CLINICALLY TRANSLATABLE DEEP NEURAL NETWORKS FOR CANCER SCREENING. Res Sq. 2023 Mar 03. PMID: 36909463.
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    35. Konz N, Buda M, Gu H, Saha A, Yang J, Chledowski J, Park J, Witowski J, Geras KJ, Shoshan Y, Gilboa-Solomon F, Khapun D, Ratner V, Barkan E, Ozery-Flato M, Mart? R, Omigbodun A, Marasinou C, Nakhaei N, Hsu W, Sahu P, Hossain MB, Lee J, Santos C, Przelaskowski A, Kalpathy-Cramer J, Bearce B, Cha K, Farahani K, Petrick N, Hadjiiski L, Drukker K, Armato SG, Mazurowski MA. A Competition, Benchmark, Code, and Data for Using Artificial Intelligence to Detect Lesions in Digital Breast Tomosynthesis. JAMA Netw Open. 2023 02 01; 6(2):e230524. PMID: 36821110.
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    36. Eilts SK, Pfeil JM, Poschkamp B, Krohne TU, Eter N, Barth T, Guthoff R, Lagr?ze W, Grundel M, Br?nder MC, Busch M, Kalpathy-Cramer J, Chiang MF, Chan RVP, Coyner AS, Ostmo S, Campbell JP, Stahl A. Assessment of Retinopathy of Prematurity Regression and Reactivation Using an Artificial Intelligence-Based Vascular Severity Score. JAMA Netw Open. 2023 01 03; 6(1):e2251512. PMID: 36656578.
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    37. Sobhy M, Cole E, Jabbehdari S, Valikodath NG, Al-Khaled T, Kalinoski L, Chervinko M, Cherwek DH, Chuluunkhuu C, Shah PK, K C S, Jonas KE, Scanzera A, Yap VL, Yeh S, Kalpathy-Cramer J, Chiang MF, Campbell JP, Chan RVP. Operationalization of Retinopathy of Prematurity Screening by the Application of the Essential Public Health Services Framework. Int Ophthalmol Clin. 2023 01 01; 63(1):39-63. PMID: 36598833.
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    38. Gidwani M, Chang K, Patel JB, Hoebel KV, Ahmed SR, Singh P, Fuller CD, Kalpathy-Cramer J. Inconsistent Partitioning and Unproductive Feature Associations Yield Idealized Radiomic Models. Radiology. 2023 04; 307(1):e220715. PMID: 36537895.
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    39. Cox M, Panagides JC, Tabari A, Kalva S, Kalpathy-Cramer J, Daye D. Risk stratification with explainable machine learning for 30-day procedure-related mortality and 30-day unplanned readmission in patients with peripheral arterial disease. PLoS One. 2022; 17(11):e0277507. PMID: 36409699.
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    40. Lemay A, Hoebel K, Bridge CP, Befano B, De Sanjos? S, Egemen D, Rodriguez AC, Schiffman M, Campbell JP, Kalpathy-Cramer J. Improving the repeatability of deep learning models with Monte Carlo dropout. NPJ Digit Med. 2022 Nov 18; 5(1):174. PMID: 36400939.
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    41. Brink L, Coombs LP, Kattil Veettil D, Kuchipudi K, Marella S, Schmidt K, Nair SS, Tilkin M, Treml C, Chang K, Kalpathy-Cramer J. ACR's?Connect and AI-LAB technical framework. JAMIA Open. 2022 Dec; 5(4):ooac094. PMID: 36380846.
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    42. Patel NJ, D'Silva KM, Li MD, Hsu TYT, DiIorio M, Fu X, Cook C, Prisco L, Martin L, Vanni KMM, Zaccardelli A, Zhang Y, Kalpathy-Cramer J, Sparks JA, Wallace ZS. Assessing the Severity of COVID-19 Lung Injury in Rheumatic Diseases Versus the General Population Using Deep Learning-Derived Chest Radiograph Scores. Arthritis Care Res (Hoboken). 2023 03; 75(3):657-666. PMID: 35313091.
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    43. Kumar S, Lakshminarayanan A, Chang K, Guretno F, Mien IH, Kalpathy-Cramer J, Krishnaswamy P, Singh P. Towards More Efficient Data Valuation in Healthcare Federated Learning using Ensembling. Distrib Collab Fed Learn Afford AI Healthc Resour Div Glob Health (2022). 2022 Sep; 13573:119-129. PMID: 36745141.
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    44. Trivedi A, Robinson C, Blazes M, Ortiz A, Desbiens J, Gupta S, Dodhia R, Bhatraju PK, Liles WC, Kalpathy-Cramer J, Lee AY, Lavista Ferres JM. Deep learning models for COVID-19 chest x-ray classification: Preventing shortcut learning using feature disentanglement. PLoS One. 2022; 17(10):e0274098. PMID: 36201483.
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    45. Robinson-Weiss C, Patel J, Bizzo BC, Glazer DI, Bridge CP, Andriole KP, Dabiri B, Chin JK, Dreyer K, Kalpathy-Cramer J, Mayo-Smith WW. Machine Learning for Adrenal Gland Segmentation and Classification of Normal and Adrenal Masses at CT. Radiology. 2022 Sep 20; 220101. PMID: 36125375.
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    46. Zhang M, Qu L, Singh P, Kalpathy-Cramer J, Rubin DL. SplitAVG: A Heterogeneity-Aware Federated Deep Learning Method for Medical Imaging. IEEE J Biomed Health Inform. 2022 09; 26(9):4635-4644. PMID: 35749336.
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    47. Bridge CP, Gorman C, Pieper S, Doyle SW, Lennerz JK, Kalpathy-Cramer J, Clunie DA, Fedorov AY, Herrmann MD. Highdicom: a Python Library for Standardized Encoding of Image Annotations and Machine Learning Model Outputs in Pathology and Radiology. J Digit Imaging. 2022 Dec; 35(6):1719-1737. PMID: 35995898.
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    48. Mehta R, Filos A, Baid U, Sako C, McKinley R, Rebsamen M, D?twyler K, Meier R, Radojewski P, Murugesan GK, Nalawade S, Ganesh C, Wagner B, Yu FF, Fei B, Madhuranthakam AJ, Maldjian JA, Daza L, G?mez C, Arbel?ez P, Dai C, Wang S, Reynaud H, Mo Y, Angelini E, Guo Y, Bai W, Banerjee S, Pei L, Ak M, Rosas-Gonz?lez S, Zemmoura I, Tauber C, Vu MH, Nyholm T, L?fstedt T, Ballestar LM, Vilaplana V, McHugh H, Maso Talou G, Wang A, Patel J, Chang K, Hoebel K, Gidwani M, Arun N, Gupta S, Aggarwal M, Singh P, Gerstner ER, Kalpathy-Cramer J, Boutry N, Huard A, Vidyaratne L, Rahman MM, Iftekharuddin KM, Chazalon J, Puybareau E, Tochon G, Ma J, Cabezas M, Llado X, Oliver A, Valencia L, Valverde S, Amian M, Soltaninejad M, Myronenko A, Hatamizadeh A, Feng X, Dou Q, Tustison N, Meyer C, Shah NA, Talbar S, Weber MA, Mahajan A, Jakab A, Wiest R, Fathallah-Shaykh HM, Nazeri A, Milchenko M, Marcus D, Kotrotsou A, Colen R, Freymann J, Kirby J, Davatzikos C, Menze B, Bakas S, Gal Y, Arbel T. QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Scores and Benchmarking Results. J Mach Learn Biomed Imaging. 2022 Aug; 2022. PMID: 36998700.
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    49. Coyner AS, Oh MA, Shah PK, Singh P, Ostmo S, Valikodath NG, Cole E, Al-Khaled T, Bajimaya S, K C S, Chuluunbat T, Munkhuu B, Subramanian P, Venkatapathy N, Jonas KE, Hallak JA, Chan RVP, Chiang MF, Kalpathy-Cramer J, Campbell JP. External Validation of a Retinopathy of Prematurity Screening Model Using Artificial Intelligence in 3 Low- and Middle-Income Populations. JAMA Ophthalmol. 2022 08 01; 140(8):791-798. PMID: 35797036.
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    50. Li MD, Arun NT, Aggarwal M, Gupta S, Singh P, Little BP, Mendoza DP, Corradi GCA, Takahashi MS, Ferraciolli SF, Succi MD, Lang M, Bizzo BC, Dayan I, Kitamura FC, Kalpathy-Cramer J. Multi-population generalizability of a deep learning-based chest radiograph severity score for COVID-19. Medicine (Baltimore). 2022 Jul 22; 101(29):e29587. PMID: 35866818.
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    51. Chavva IR, Crawford AL, Mazurek MH, Yuen MM, Prabhat AM, Payabvash S, Sze G, Falcone GJ, Matouk CC, de Havenon A, Kim JA, Sharma R, Schiff SJ, Rosen MS, Kalpathy-Cramer J, Iglesias Gonzalez JE, Kimberly WT, Sheth KN. Deep Learning Applications for Acute Stroke Management. Ann Neurol. 2022 10; 92(4):574-587. PMID: 35689531.
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    52. Cole ED, Park SH, Kim SJ, Kang KB, Valikodath NG, Al-Khaled T, Patel SN, Jonas KE, Ostmo S, Coyner A, Berrocal A, Drenser KA, Nagiel A, Horowitz JD, Lee TC, Kalpathy-Cramer J, Chiang MF, Campbell JP, Chan RVP. Variability in Plus Disease Diagnosis using Single and Serial Images. Ophthalmol Retina. 2022 12; 6(12):1122-1129. PMID: 35659941.
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    53. Cole E, Valikodath NG, Al-Khaled T, Bajimaya S, Kc S, Chuluunbat T, Munkhuu B, Jonas KE, Chuluunkhuu C, MacKeen LD, Yap V, Hallak J, Ostmo S, Wu WC, Coyner AS, Singh P, Kalpathy-Cramer J, Chiang MF, Campbell JP, Chan RVP. Evaluation of an Artificial Intelligence System for Retinopathy of Prematurity Screening in Nepal and Mongolia. Ophthalmol Sci. 2022 Dec; 2(4):100165. PMID: 36531583.
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    54. Ardestani A, Li MD, Chea P, Wortman JR, Medina A, Kalpathy-Cramer J, Wald C. External COVID-19 Deep Learning Model Validation on ACR AI-LAB: It's a Brave New World. J Am Coll Radiol. 2022 07; 19(7):891-900. PMID: 35483438.
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    55. O'Shea A, Li MD, Mercaldo ND, Balthazar P, Som A, Yeung T, Succi MD, Little BP, Kalpathy-Cramer J, Lee SI. Intubation and mortality prediction in hospitalized COVID-19 patients using a combination of convolutional neural network-based scoring of chest radiographs and clinical data. BJR Open. 2022; 4(1):20210062. PMID: 36105420.
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    56. Cox M, Reid N, Panagides JC, Di Capua J, DeCarlo C, Dua A, Kalva S, Kalpathy-Cramer J, Daye D. Interpretable Machine Learning for the Prediction of Amputation Risk Following Lower Extremity Infrainguinal Endovascular Interventions for Peripheral Arterial Disease. Cardiovasc Intervent Radiol. 2022 May; 45(5):633-640. PMID: 35322303.
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    57. Hanif A, Lu C, Chang K, Singh P, Coyner AS, Brown JM, Ostmo S, Chan RVP, Rubin D, Chiang MF, Kalpathy-Cramer J, Campbell JP. Federated Learning for Multicenter Collaboration in Ophthalmology: Implications for Clinical Diagnosis and Disease Epidemiology. Ophthalmol Retina. 2022 08; 6(8):650-656. PMID: 35304305.
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    58. Lu C, Hanif A, Singh P, Chang K, Coyner AS, Brown JM, Ostmo S, Chan RVP, Rubin D, Chiang MF, Campbell JP, Kalpathy-Cramer J. Federated Learning for Multicenter Collaboration in Ophthalmology: Improving Classification Performance in Retinopathy of Prematurity. Ophthalmol Retina. 2022 08; 6(8):657-663. PMID: 35296449.
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    59. Campbell JP, Chiang MF, Chen JS, Moshfeghi DM, Nudleman E, Ruambivoonsuk P, Cherwek H, Cheung CY, Singh P, Kalpathy-Cramer J, Ostmo S, Eydelman M, Chan RVP, Capone A. Artificial Intelligence for Retinopathy of Prematurity: Validation of a Vascular Severity Scale against International Expert Diagnosis. Ophthalmology. 2022 07; 129(7):e69-e76. PMID: 35157950.
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    60. Coyner AS, Chen JS, Chang K, Singh P, Ostmo S, Chan RVP, Chiang MF, Kalpathy-Cramer J, Campbell JP. Synthetic Medical Images for Robust,?Privacy-Preserving Training of Artificial Intelligence: Application to Retinopathy of Prematurity Diagnosis. Ophthalmol Sci. 2022 Jun; 2(2):100126. PMID: 36249693.
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    61. Hanif A, Yildiz I, Tian P, Kalkanli B, Erdogmus D, Ioannidis S, Dy J, Kalpathy-Cramer J, Ostmo S, Jonas K, Chan RVP, Chiang MF, Campbell JP. Improved Training Efficiency for Retinopathy of Prematurity Deep Learning Models Using Comparison versus Class Labels. Ophthalmol Sci. 2022 Jun; 2(2):100122. PMID: 36249702.
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    130. Ly KI, Vakulenko-Lagun B, Emblem KE, Ou Y, Da X, Betensky RA, Kalpathy-Cramer J, Duda DG, Jain RK, Chi AS, Plotkin SR, Batchelor TT, Sorensen G, Rosen BR, Gerstner ER. Publisher Correction: Probing tumor microenvironment in patients with newly diagnosed glioblastoma during chemoradiation and adjuvant temozolomide with functional MRI. Sci Rep. 2019 Jun 14; 9(1):8721. PMID: 31197238.
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    131. Choudhery S, Chou SS, Chang K, Kalpathy-Cramer J, Lehman CD. Kinetic Analysis of Lesions Identified on a Rapid Abridged Multiphase (RAMP) Breast MRI Protocol. Acad Radiol. 2020 05; 27(5):672-681. PMID: 31147233.
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    132. Allen B, Agarwal S, Kalpathy-Cramer J, Dreyer K. Democratizing AI. J Am Coll Radiol. 2019 Jul; 16(7):961-963. PMID: 31272590.
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    133. Langlotz CP, Allen B, Erickson BJ, Kalpathy-Cramer J, Bigelow K, Cook TS, Flanders AE, Lungren MP, Mendelson DS, Rudie JD, Wang G, Kandarpa K. A Roadmap for Foundational Research on Artificial Intelligence in Medical Imaging: From the 2018 NIH/RSNA/ACR/The Academy Workshop. Radiology. 2019 06; 291(3):781-791. PMID: 30990384.
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    134. Vu QD, Graham S, Kurc T, To MNN, Shaban M, Qaiser T, Koohbanani NA, Khurram SA, Kalpathy-Cramer J, Zhao T, Gupta R, Kwak JT, Rajpoot N, Saltz J, Farahani K. Methods for Segmentation and Classification of Digital Microscopy Tissue Images. Front Bioeng Biotechnol. 2019; 7:53. PMID: 31001524.
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    135. Huang W, Chen Y, Fedorov A, Li X, Jajamovich GH, Malyarenko DI, Aryal MP, LaViolette PS, Oborski MJ, O'Sullivan F, Abramson RG, Jafari-Khouzani K, Afzal A, Tudorica A, Moloney B, Gupta SN, Besa C, Kalpathy-Cramer J, Mountz JM, Laymon CM, Muzi M, Kinahan PE, Schmainda K, Cao Y, Chenevert TL, Taouli B, Yankeelov TE, Fennessy F, Li X. The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge, Part II. Tomography. 2019 03; 5(1):99-109. PMID: 30854447.
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    136. Bell LC, Semmineh N, An H, Eldeniz C, Wahl R, Schmainda KM, Prah MA, Erickson BJ, Korfiatis P, Wu C, Sorace AG, Yankeelov TE, Rutledge N, Chenevert TL, Malyarenko D, Liu Y, Brenner A, Hu LS, Zhou Y, Boxerman JL, Yen YF, Kalpathy-Cramer J, Beers AL, Muzi M, Madhuranthakam AJ, Pinho M, Johnson B, Quarles CC. Evaluating Multisite rCBV Consistency from DSC-MRI Imaging Protocols and Postprocessing Software Across the NCI Quantitative Imaging Network Sites Using a Digital Reference Object (DRO). Tomography. 2019 03; 5(1):110-117. PMID: 30854448.
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    137. Coyner AS, Swan R, Campbell JP, Ostmo S, Brown JM, Kalpathy-Cramer J, Kim SJ, Jonas KE, Chan RVP, Chiang MF. Automated Fundus Image Quality Assessment in Retinopathy of Prematurity Using Deep Convolutional Neural Networks. Ophthalmol Retina. 2019 05; 3(5):444-450. PMID: 31044738.
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    138. Prevedello LM, Halabi SS, Shih G, Wu CC, Kohli MD, Chokshi FH, Erickson BJ, Kalpathy-Cramer J, Andriole KP, Flanders AE. Challenges Related to Artificial Intelligence Research in Medical Imaging and the Importance of Image Analysis Competitions. Radiol Artif Intell. 2019 Jan; 1(1):e180031. PMID: 33937783.
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    139. Elhalawani H, Elgohari B, Lin TA, Mohamed ASR, Fitzgerald TJ, Laurie F, Ulin K, Kalpathy-Cramer J, Guerrero T, Holliday EB, Russo G, Patel A, Jones W, Walker GV, Awan M, Choi M, Dagan R, Mahmoud O, Shapiro A, Kong FS, Gomez D, Zeng J, Decker R, Spoelstra FOB, Gaspar LE, Kachnic LA, Thomas CR, Okunieff P, Fuller CD. An in-silico quality assurance study of contouring target volumes in thoracic tumors within a cooperative group setting. Clin Transl Radiat Oncol. 2019 Feb; 15:83-92. PMID: 30775563.
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    140. Coyner AS, Swan R, Brown JM, Kalpathy-Cramer J, Kim SJ, Campbell JP, Jonas KE, Ostmo S, Chan RVP, Chiang MF. Deep Learning for Image Quality Assessment of Fundus Images in Retinopathy of Prematurity. AMIA Annu Symp Proc. 2018; 2018:1224-1232. PMID: 30815164.
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    141. Halabi SS, Prevedello LM, Kalpathy-Cramer J, Mamonov AB, Bilbily A, Cicero M, Pan I, Pereira LA, Sousa RT, Abdala N, Kitamura FC, Thodberg HH, Chen L, Shih G, Andriole K, Kohli MD, Erickson BJ, Flanders AE. The RSNA Pediatric Bone Age Machine Learning Challenge. Radiology. 2019 02; 290(2):498-503. PMID: 30480490.
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    142. Redd TK, Campbell JP, Brown JM, Kim SJ, Ostmo S, Chan RVP, Dy J, Erdogmus D, Ioannidis S, Kalpathy-Cramer J, Chiang MF. Evaluation of a deep learning image assessment system for detecting severe retinopathy of prematurity. Br J Ophthalmol. 2018 Nov 23. PMID: 30470715.
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    143. Ly KI, Vakulenko-Lagun B, Emblem KE, Ou Y, Da X, Betensky RA, Kalpathy-Cramer J, Duda DG, Jain RK, Chi AS, Plotkin SR, Batchelor TT, Sorensen G, Rosen BR, Gerstner ER. Probing tumor microenvironment in patients with newly diagnosed glioblastoma during chemoradiation and adjuvant temozolomide with functional MRI. Sci Rep. 2018 11 20; 8(1):17062. PMID: 30459364.
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    144. Armato SG, Huisman H, Drukker K, Hadjiiski L, Kirby JS, Petrick N, Redmond G, Giger ML, Cha K, Mamonov A, Kalpathy-Cramer J, Farahani K. PROSTATEx Challenges for computerized classification of prostate lesions from multiparametric magnetic resonance images. J Med Imaging (Bellingham). 2018 Oct; 5(4):044501. PMID: 30840739.
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    145. Lee A, Taylor P, Kalpathy-Cramer J, Tufail A. Reply. Ophthalmology. 2018 12; 125(12):e86. PMID: 30343936.
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    146. Ou Y, Z?llei L, Da X, Retzepi K, Murphy SN, Gerstner ER, Rosen BR, Grant PE, Kalpathy-Cramer J, Gollub RL. Field of View Normalization in Multi-Site Brain MRI. Neuroinformatics. 2018 10; 16(3-4):431-444. PMID: 29353341.
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    147. Winzeck S, Hakim A, McKinley R, Pinto JAADSR, Alves V, Silva C, Pisov M, Krivov E, Belyaev M, Monteiro M, Oliveira A, Choi Y, Paik MC, Kwon Y, Lee H, Kim BJ, Won JH, Islam M, Ren H, Robben D, Suetens P, Gong E, Niu Y, Xu J, Pauly JM, Lucas C, Heinrich MP, Rivera LC, Castillo LS, Daza LA, Beers AL, Arbelaezs P, Maier O, Chang K, Brown JM, Kalpathy-Cramer J, Zaharchuk G, Wiest R, Reyes M. ISLES 2016 and 2017-Benchmarking Ischemic Stroke Lesion Outcome Prediction Based on Multispectral MRI. Front Neurol. 2018; 9:679. PMID: 30271370.
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    148. Robins M, Kalpathy-Cramer J, Obuchowski NA, Buckler A, Athelogou M, Jarecha R, Petrick N, Pezeshk A, Sahiner B, Samei E. Evaluation of Simulated Lesions as Surrogates to Clinical Lesions for Thoracic CT Volumetry: The Results of an International Challenge. Acad Radiol. 2019 07; 26(7):e161-e173. PMID: 30219290.
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    149. Ng SP, Dyer BA, Kalpathy-Cramer J, Mohamed ASR, Awan MJ, Gunn GB, Phan J, Zafereo M, Debnam JM, Lewis CM, Colen RR, Kupferman ME, Guha-Thakurta N, Canahuate G, Marai GE, Vock D, Hamilton B, Holland J, Cardenas CE, Lai S, Rosenthal D, Fuller CD. A prospective in silico analysis of interdisciplinary and interobserver spatial variability in post-operative target delineation of high-risk oral cavity cancers: Does physician specialty matter? Clin Transl Radiat Oncol. 2018 Aug; 12:40-46. PMID: 30148217.
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    150. Chang K, Balachandar N, Lam C, Yi D, Brown J, Beers A, Rosen B, Rubin DL, Kalpathy-Cramer J. Distributed deep learning networks among institutions for medical imaging. J Am Med Inform Assoc. 2018 08 01; 25(8):945-954. PMID: 29617797.
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    151. Brown JM, Campbell JP, Beers A, Chang K, Ostmo S, Chan RVP, Dy J, Erdogmus D, Ioannidis S, Kalpathy-Cramer J, Chiang MF. Automated Diagnosis of Plus Disease in Retinopathy of Prematurity Using Deep Convolutional Neural Networks. JAMA Ophthalmol. 2018 07 01; 136(7):803-810. PMID: 29801159.
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    152. Kim SJ, Campbell JP, Kalpathy-Cramer J, Ostmo S, Jonas KE, Choi D, Chan RVP, Chiang MF. Accuracy and Reliability of Eye-Based vs Quadrant-Based Diagnosis of Plus Disease in Retinopathy of Prematurity. JAMA Ophthalmol. 2018 06 01; 136(6):648-655. PMID: 29710185.
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    153. Schmainda KM, Prah MA, Rand SD, Liu Y, Logan B, Muzi M, Rane SD, Da X, Yen YF, Kalpathy-Cramer J, Chenevert TL, Hoff B, Ross B, Cao Y, Aryal MP, Erickson B, Korfiatis P, Dondlinger T, Bell L, Hu L, Kinahan PE, Quarles CC. Multisite Concordance of DSC-MRI Analysis for Brain Tumors: Results of a National Cancer Institute Quantitative Imaging Network Collaborative Project. AJNR Am J Neuroradiol. 2018 06; 39(6):1008-1016. PMID: 29794239.
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    154. Balagurunathan Y, Beers A, Kalpathy-Cramer J, McNitt-Gray M, Hadjiiski L, Zhao B, Zhu J, Yang H, Yip SSF, Aerts HJWL, Napel S, Cherezov D, Cha K, Chan HP, Flores C, Garcia A, Gillies R, Goldgof D. Erratum: Semi-automated pulmonary nodule interval segmentation using the NLST data. Med Phys. 2018 Jun; 45(6):2689-2690. PMID: 29894564.
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    155. Balagurunathan Y, Beers A, Kalpathy-Cramer J, McNitt-Gray M, Hadjiiski L, Zhao B, Zhu J, Yang H, Yip SSF, Aerts HJWL, Napel S, Cherezov D, Cha K, Chan HP, Flores C, Garcia A, Gillies R, Goldgof D. Semi-automated pulmonary nodule interval segmentation using the NLST data. Med Phys. 2018 Mar; 45(3):1093-1107. PMID: 29363773.
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    156. Prust ML, Jafari-Khouzani K, Kalpathy-Cramer J, Polaskova P, Batchelor TT, Gerstner ER, Dietrich J. Standard chemoradiation in combination with VEGF targeted therapy for glioblastoma results in progressive gray and white matter volume loss. Neuro Oncol. 2018 01 22; 20(2):289-291. PMID: 29315410.
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    157. Lauer A, Da X, Hansen MB, Boulouis G, Ou Y, Cai X, Liberato Celso Pedrotti A, Kalpathy-Cramer J, Caruso P, Hayden DL, Rost N, Mouridsen K, Eichler FS, Rosen B, Musolino PL. ABCD1 dysfunction alters white matter microvascular perfusion. Brain. 2017 Dec 01; 140(12):3139-3152. PMID: 29136088.
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    158. Lee A, Taylor P, Kalpathy-Cramer J, Tufail A. Machine Learning Has Arrived! Ophthalmology. 2017 12; 124(12):1726-1728. PMID: 29157423.
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    159. Shazeeb MS, Kalpathy-Cramer J, Issa B. MRI Simulation Study Investigating Effects of Vessel Topology, Diffusion, and Susceptibility on Transverse Relaxation Rates Using a Cylinder Fork Model. Sci Rep. 2017 11 24; 7(1):16223. PMID: 29176647.
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    160. Chang K, Bai HX, Zhou H, Su C, Bi WL, Agbodza E, Kavouridis VK, Senders JT, Boaro A, Beers A, Zhang B, Capellini A, Liao W, Shen Q, Li X, Xiao B, Cryan J, Ramkissoon S, Ramkissoon L, Ligon K, Wen PY, Bindra RS, Woo J, Arnaout O, Gerstner ER, Zhang PJ, Rosen BR, Yang L, Huang RY, Kalpathy-Cramer J. Residual Convolutional Neural Network for the Determination of IDH Status in Low- and High-Grade Gliomas from MR Imaging. Clin Cancer Res. 2018 03 01; 24(5):1073-1081. PMID: 29167275.
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    161. Farrar CT, Gale EM, Kennan R, Ramsay I, Masia R, Arora G, Looby K, Wei L, Kalpathy-Cramer J, Bunzel MM, Zhang C, Zhu Y, Akiyama TE, Klimas M, Pinto S, Diyabalanage H, Tanabe KK, Humblet V, Fuchs BC, Caravan P. CM-101: Type I Collagen-targeted MR Imaging Probe for Detection of Liver Fibrosis. Radiology. 2018 05; 287(2):581-589. PMID: 29156148.
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    162. Newitt DC, Malyarenko D, Chenevert TL, Quarles CC, Bell L, Fedorov A, Fennessy F, Jacobs MA, Solaiyappan M, Hectors S, Taouli B, Muzi M, Kinahan PE, Schmainda KM, Prah MA, Taber EN, Kroenke C, Huang W, Arlinghaus LR, Yankeelov TE, Cao Y, Aryal M, Yen YF, Kalpathy-Cramer J, Shukla-Dave A, Fung M, Liang J, Boss M, Hylton N. Multisite concordance of apparent diffusion coefficient measurements across the NCI Quantitative Imaging Network. J Med Imaging (Bellingham). 2018 Jan; 5(1):011003. PMID: 29021993.
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    163. Zhou M, Scott J, Chaudhury B, Hall L, Goldgof D, Yeom KW, Iv M, Ou Y, Kalpathy-Cramer J, Napel S, Gillies R, Gevaert O, Gatenby R. Radiomics in Brain Tumor: Image Assessment, Quantitative Feature Descriptors, and Machine-Learning Approaches. AJNR Am J Neuroradiol. 2018 02; 39(2):208-216. PMID: 28982791.
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    164. Bane O, Hectors SJ, Wagner M, Arlinghaus LL, Aryal MP, Cao Y, Chenevert TL, Fennessy F, Huang W, Hylton NM, Kalpathy-Cramer J, Keenan KE, Malyarenko DI, Mulkern RV, Newitt DC, Russek SE, Stupic KF, Tudorica A, Wilmes LJ, Yankeelov TE, Yen YF, Boss MA, Taouli B. Accuracy, repeatability, and interplatform reproducibility of T1 quantification methods used for DCE-MRI: Results from a multicenter phantom study. Magn Reson Med. 2018 05; 79(5):2564-2575. PMID: 28913930.
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    165. Saltz J, Almeida J, Gao Y, Sharma A, Bremer E, DiPrima T, Saltz M, Kalpathy-Cramer J, Kurc T. Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research. AMIA Jt Summits Transl Sci Proc. 2017; 2017:85-94. PMID: 28815113.
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    166. Moleta C, Campbell JP, Kalpathy-Cramer J, Chan RVP, Ostmo S, Jonas K, Chiang MF. Plus Disease in Retinopathy of Prematurity: Diagnostic Trends in 2016 Versus 2007. Am J Ophthalmol. 2017 Apr; 176:70-76. PMID: 28087400.
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    167. Farahani K, Kalpathy-Cramer J, Chenevert TL, Rubin DL, Sunderland JJ, Nordstrom RJ, Buatti J, Hylton N. Computational Challenges and Collaborative Projects in the NCI Quantitative Imaging Network. Tomography. 2016 Dec; 2(4):242-249. PMID: 28798963.
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    168. Kalpathy-Cramer J, Mamomov A, Zhao B, Lu L, Cherezov D, Napel S, Echegaray S, Rubin D, McNitt-Gray M, Lo P, Sieren JC, Uthoff J, Dilger SK, Driscoll B, Yeung I, Hadjiiski L, Cha K, Balagurunathan Y, Gillies R, Goldgof D. Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features. Tomography. 2016 Dec; 2(4):430-437. PMID: 28149958.
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    169. Hansen MB, Tietze A, Kalpathy-Cramer J, Gerstner ER, Batchelor TT, ?stergaard L, Mouridsen K. Reliable estimation of microvascular flow patterns in patients with disrupted blood-brain barrier using dynamic susceptibility contrast MRI. J Magn Reson Imaging. 2017 08; 46(2):537-549. PMID: 27902858.
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    170. Kalpathy-Cramer J, Chandra V, Da X, Ou Y, Emblem KE, Muzikansky A, Cai X, Douw L, Evans JG, Dietrich J, Chi AS, Wen PY, Stufflebeam S, Rosen B, Duda DG, Jain RK, Batchelor TT, Gerstner ER. Phase II study of tivozanib, an oral VEGFR inhibitor, in patients with recurrent glioblastoma. J Neurooncol. 2017 02; 131(3):603-610. PMID: 27853960.
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    171. Le M, Delingette H, Kalpathy-Cramer J, Gerstner ER, Batchelor T, Unkelbach J, Ayache N. Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model. IEEE Trans Med Imaging. 2017 03; 36(3):815-825. PMID: 28113925.
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    172. Boujelben A, Watson M, McDougall S, Yen YF, Gerstner ER, Catana C, Deisboeck T, Batchelor TT, Boas D, Rosen B, Kalpathy-Cramer J, Chaplain MA. Multimodality imaging and mathematical modelling of drug delivery to glioblastomas. Interface Focus. 2016 Oct 06; 6(5):20160039. PMID: 27708763.
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    173. Campbell JP, Kalpathy-Cramer J, Erdogmus D, Tian P, Kedarisetti D, Moleta C, Reynolds JD, Hutcheson K, Shapiro MJ, Repka MX, Ferrone P, Drenser K, Horowitz J, Sonmez K, Swan R, Ostmo S, Jonas KE, Chan RV, Chiang MF. Plus Disease in Retinopathy of Prematurity: A Continuous Spectrum of Vascular Abnormality as a Basis of Diagnostic Variability. Ophthalmology. 2016 11; 123(11):2338-2344. PMID: 27591053.
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    174. Kalpathy-Cramer J, Campbell JP, Erdogmus D, Tian P, Kedarisetti D, Moleta C, Reynolds JD, Hutcheson K, Shapiro MJ, Repka MX, Ferrone P, Drenser K, Horowitz J, Sonmez K, Swan R, Ostmo S, Jonas KE, Chan RV, Chiang MF. Plus Disease in Retinopathy of Prematurity: Improving Diagnosis by Ranking Disease Severity and Using Quantitative Image Analysis. Ophthalmology. 2016 11; 123(11):2345-2351. PMID: 27566853.
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    175. Ataer-Cansizoglu E, Kalpathy-Cramer J, Ostmo S, Jonas K, Chan RV, Campbell JP, Chiang MF, Erdogmus D. Toward a severity index for ROP: An unsupervised approach. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:1312-1315. PMID: 28268567.
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    176. Kalpathy-Cramer J, Zhao B, Goldgof D, Gu Y, Wang X, Yang H, Tan Y, Gillies R, Napel S. A Comparison of Lung Nodule Segmentation Algorithms: Methods and Results from a Multi-institutional Study. J Digit Imaging. 2016 08; 29(4):476-87. PMID: 26847203.
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    177. Campbell JP, Ataer-Cansizoglu E, Bolon-Canedo V, Bozkurt A, Erdogmus D, Kalpathy-Cramer J, Patel SN, Reynolds JD, Horowitz J, Hutcheson K, Shapiro M, Repka MX, Ferrone P, Drenser K, Martinez-Castellanos MA, Ostmo S, Jonas K, Chan RV, Chiang MF. Expert Diagnosis of Plus Disease in Retinopathy of Prematurity From Computer-Based Image Analysis. JAMA Ophthalmol. 2016 Jun 01; 134(6):651-7. PMID: 27077667.
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    178. Le M, Delingette H, Kalpathy-Cramer J, Gerstner ER, Batchelor T, Unkelbach J, Ayache N. MRI Based Bayesian Personalization of a Tumor Growth Model. IEEE Trans Med Imaging. 2016 10; 35(10):2329-2339. PMID: 27164582.
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    179. Huang W, Chen Y, Fedorov A, Li X, Jajamovich GH, Malyarenko DI, Aryal MP, LaViolette PS, Oborski MJ, O'Sullivan F, Abramson RG, Jafari-Khouzani K, Afzal A, Tudorica A, Moloney B, Gupta SN, Besa C, Kalpathy-Cramer J, Mountz JM, Laymon CM, Muzi M, Schmainda K, Cao Y, Chenevert TL, Taouli B, Yankeelov TE, Fennessy F, Li X. The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge. Tomography. 2016 Mar; 2(1):56-66. PMID: 27200418.
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    180. Messer JA, Mohamed AS, Hutcheson KA, Ding Y, Lewin JS, Wang J, Lai SY, Frank SJ, Garden AS, Sandulache V, Eichelberger H, French CC, Colen RR, Phan J, Kalpathy-Cramer J, Hazle JD, Rosenthal DI, Gunn GB, Fuller CD. Magnetic resonance imaging of swallowing-related structures in nasopharyngeal carcinoma patients receiving IMRT: Longitudinal dose-response characterization of quantitative signal kinetics. Radiother Oncol. 2016 Feb; 118(2):315-22. PMID: 26830697.
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    181. Yankeelov TE, Mankoff DA, Schwartz LH, Lieberman FS, Buatti JM, Mountz JM, Erickson BJ, Fennessy FM, Huang W, Kalpathy-Cramer J, Wahl RL, Linden HM, Kinahan PE, Zhao B, Hylton NM, Gillies RJ, Clarke L, Nordstrom R, Rubin DL. Quantitative Imaging in Cancer Clinical Trials. Clin Cancer Res. 2016 Jan 15; 22(2):284-90. PMID: 26773162.
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    182. Ataer-Cansizoglu E, Bolon-Canedo V, Campbell JP, Bozkurt A, Erdogmus D, Kalpathy-Cramer J, Patel S, Jonas K, Chan RV, Ostmo S, Chiang MF. Computer-Based Image Analysis for Plus Disease Diagnosis in Retinopathy of Prematurity: Performance of the "i-ROP" System and Image Features Associated With Expert Diagnosis. Transl Vis Sci Technol. 2015 Nov; 4(6):5. PMID: 26644965.
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    183. Holliday E, Fuller CD, Kalpathy-Cramer J, Gomez D, Rimner A, Li Y, Senan S, Wilson LD, Choi J, Komaki R, Thomas CR. Quantitative assessment of target delineation variability for thymic cancers: Agreement evaluation of a prospective segmentation challenge. J Radiat Oncol. 2016 Mar; 5(1):55-61. PMID: 27570583.
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    184. Shoultz-Henley S, Garden AS, Mohamed AS, Sheu T, Kroll MH, Rosenthal DI, Gunn GB, Hayes AJ, French C, Eichelberger H, Kalpathy-Cramer J, Smith BD, Phan J, Ayoub Z, Lai SY, Pham B, Kies M, Gold KA, Sturgis E, Fuller CD. Prognostic value of pretherapy platelet elevation in oropharyngeal cancer patients treated with chemoradiation. Int J Cancer. 2016 Mar 01; 138(5):1290-7. PMID: 26414107.
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    185. Ding Y, Hazle JD, Mohamed AS, Frank SJ, Hobbs BP, Colen RR, Gunn GB, Wang J, Kalpathy-Cramer J, Garden AS, Lai SY, Rosenthal DI, Fuller CD. Intravoxel incoherent motion imaging kinetics during chemoradiotherapy for human papillomavirus-associated squamous cell carcinoma of the oropharynx: preliminary results from a prospective pilot study. NMR Biomed. 2015 Dec; 28(12):1645-54. PMID: 26451969.
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    186. Ellingson BM, Bendszus M, Boxerman J, Barboriak D, Erickson BJ, Smits M, Nelson SJ, Gerstner E, Alexander B, Goldmacher G, Wick W, Vogelbaum M, Weller M, Galanis E, Kalpathy-Cramer J, Shankar L, Jacobs P, Pope WB, Yang D, Chung C, Knopp MV, Cha S, van den Bent MJ, Chang S, Yung WK, Cloughesy TF, Wen PY, Gilbert MR. Consensus recommendations for a standardized Brain Tumor Imaging Protocol in clinical trials. Neuro Oncol. 2015 Sep; 17(9):1188-98. PMID: 26250565.
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    187. Prust MJ, Jafari-Khouzani K, Kalpathy-Cramer J, Polaskova P, Batchelor TT, Gerstner ER, Dietrich J. Standard chemoradiation for glioblastoma results in progressive brain volume loss. Neurology. 2015 Aug 25; 85(8):683-91. PMID: 26208964.
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    188. Bol?n-Canedo V, Ataer-Cansizoglu E, Erdogmus D, Kalpathy-Cramer J, Fontenla-Romero O, Alonso-Betanzos A, Chiang MF. Dealing with inter-expert variability in retinopathy of prematurity: A machine learning approach. Comput Methods Programs Biomed. 2015 Oct; 122(1):1-15. PMID: 26120072.
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    189. Prah MA, Stufflebeam SM, Paulson ES, Kalpathy-Cramer J, Gerstner ER, Batchelor TT, Barboriak DP, Rosen BR, Schmainda KM. Repeatability of Standardized and Normalized Relative CBV in Patients with Newly Diagnosed Glioblastoma. AJNR Am J Neuroradiol. 2015 Sep; 36(9):1654-61. PMID: 26066626.
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    190. Jafari-Khouzani K, Emblem KE, Kalpathy-Cramer J, Bj?rnerud A, Vangel MG, Gerstner ER, Schmainda KM, Paynabar K, Wu O, Wen PY, Batchelor T, Rosen B, Stufflebeam SM. Repeatability of Cerebral Perfusion Using Dynamic Susceptibility Contrast MRI in Glioblastoma Patients. Transl Oncol. 2015 Jun; 8(3):137-46. PMID: 26055170.
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    191. Demner-Fushman D, Antani S, Kalpathy-Cramer J, M?ller H. A decade of community-wide efforts in advancing medical image understanding and retrieval. Comput Med Imaging Graph. 2015 Jan; 39:1-2. PMID: 25572585.
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    192. Menze BH, Jakab A, Bauer S, Kalpathy-Cramer J, Farahani K, Kirby J, Burren Y, Porz N, Slotboom J, Wiest R, Lanczi L, Gerstner E, Weber MA, Arbel T, Avants BB, Ayache N, Buendia P, Collins DL, Cordier N, Corso JJ, Criminisi A, Das T, Delingette H, Demiralp ?, Durst CR, Dojat M, Doyle S, Festa J, Forbes F, Geremia E, Glocker B, Golland P, Guo X, Hamamci A, Iftekharuddin KM, Jena R, John NM, Konukoglu E, Lashkari D, Mariz JA, Meier R, Pereira S, Precup D, Price SJ, Raviv TR, Reza SM, Ryan M, Sarikaya D, Schwartz L, Shin HC, Shotton J, Silva CA, Sousa N, Subbanna NK, Szekely G, Taylor TJ, Thomas OM, Tustison NJ, Unal G, Vasseur F, Wintermark M, Ye DH, Zhao L, Zhao B, Zikic D, Prastawa M, Reyes M, Van Leemput K. The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS). IEEE Trans Med Imaging. 2015 Oct; 34(10):1993-2024. PMID: 25494501.
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    193. Ataer-Cansizoglu E, Kalpathy-Cramer J, You S, Keck K, Erdogmus D, Chiang MF. Analysis of underlying causes of inter-expert disagreement in retinopathy of prematurity diagnosis. Application of machine learning principles. Methods Inf Med. 2015; 54(1):93-102. PMID: 25434784.
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    194. Mohamed AS, Ruangskul MN, Awan MJ, Baron CA, Kalpathy-Cramer J, Castillo R, Castillo E, Guerrero TM, Kocak-Uzel E, Yang J, Court LE, Kantor ME, Gunn GB, Colen RR, Frank SJ, Garden AS, Rosenthal DI, Fuller CD. Quality assurance assessment of diagnostic and radiation therapy-simulation CT image registration for head and neck radiation therapy: anatomic region of interest-based comparison of rigid and deformable algorithms. Radiology. 2015 Mar; 274(3):752-63. PMID: 25380454.
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    195. Awan M, Dyer BA, Kalpathy-Cramer J, Bongers E, Dahele M, Yang J, Walker GV, Thaker NG, Holliday E, Bishop AJ, Thomas CR, Rosenthal DI, Fuller CD. Auto-segmentation of the brachial plexus assessed with TaCTICS - a software platform for rapid multiple-metric quantitative evaluation of contours. Acta Oncol. 2015 Apr; 54(4):557-60. PMID: 25279958.
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    196. Kalpathy-Cramer J, Gerstner ER, Emblem KE, Andronesi O, Rosen B. Advanced magnetic resonance imaging of the physical processes in human glioblastoma. Cancer Res. 2014 Sep 01; 74(17):4622-4637. PMID: 25183787.
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    197. Obuchowski NA, Reeves AP, Huang EP, Wang XF, Buckler AJ, Kim HJ, Barnhart HX, Jackson EF, Giger ML, Pennello G, Toledano AY, Kalpathy-Cramer J, Apanasovich TV, Kinahan PE, Myers KJ, Goldgof DB, Barboriak DP, Gillies RJ, Schwartz LH, Sullivan DC. Quantitative imaging biomarkers: a review of statistical methods for computer algorithm comparisons. Stat Methods Med Res. 2015 Feb; 24(1):68-106. PMID: 24919829.
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    198. Obuchowski NA, Barnhart HX, Buckler AJ, Pennello G, Wang XF, Kalpathy-Cramer J, Kim HJ, Reeves AP. Statistical issues in the comparison of quantitative imaging biomarker algorithms using pulmonary nodule volume as an example. Stat Methods Med Res. 2015 Feb; 24(1):107-40. PMID: 24919828.
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    199. Gutman DA, Dunn WD, Cobb J, Stoner RM, Kalpathy-Cramer J, Erickson B. Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer. Front Neuroinform. 2014; 8:53. PMID: 24904399.
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    200. Kalpathy-Cramer J, de Herrera AG, Demner-Fushman D, Antani S, Bedrick S, M?ller H. Evaluating performance of biomedical image retrieval systems--an overview of the medical image retrieval task at ImageCLEF 2004-2013. Comput Med Imaging Graph. 2015 Jan; 39:55-61. PMID: 24746250.
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    201. Kalpathy-Cramer J, Awan M, Bedrick S, Rasch CR, Rosenthal DI, Fuller CD. Development of a software for quantitative evaluation radiotherapy target and organ-at-risk segmentation comparison. J Digit Imaging. 2014 Feb; 27(1):108-19. PMID: 24043593.
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    202. Huang W, Li X, Chen Y, Li X, Chang MC, Oborski MJ, Malyarenko DI, Muzi M, Jajamovich GH, Fedorov A, Tudorica A, Gupta SN, Laymon CM, Marro KI, Dyvorne HA, Miller JV, Barbodiak DP, Chenevert TL, Yankeelov TE, Mountz JM, Kinahan PE, Kikinis R, Taouli B, Fennessy F, Kalpathy-Cramer J. Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: a multicenter data analysis challenge. Transl Oncol. 2014 Feb; 7(1):153-66. PMID: 24772219.
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    203. Kalpathy-Cramer J, Freymann JB, Kirby JS, Kinahan PE, Prior FW. Quantitative Imaging Network: Data Sharing and Competitive AlgorithmValidation Leveraging The Cancer Imaging Archive. Transl Oncol. 2014 Feb; 7(1):147-52. PMID: 24772218.
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    204. Pinho MC, Polaskova P, Kalpathy-Cramer J, Jennings D, Emblem KE, Jain RK, Rosen BR, Wen PY, Sorensen AG, Batchelor TT, Gerstner ER. Low incidence of pseudoprogression by imaging in newly diagnosed glioblastoma patients treated with cediranib in combination with chemoradiation. Oncologist. 2014 Jan; 19(1):75-81. PMID: 24309981.
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    205. Batchelor TT, Gerstner ER, Emblem KE, Duda DG, Kalpathy-Cramer J, Snuderl M, Ancukiewicz M, Polaskova P, Pinho MC, Jennings D, Plotkin SR, Chi AS, Eichler AF, Dietrich J, Hochberg FH, Lu-Emerson C, Iafrate AJ, Ivy SP, Rosen BR, Loeffler JS, Wen PY, Sorensen AG, Jain RK. Improved tumor oxygenation and survival in glioblastoma patients who show increased blood perfusion after cediranib and chemoradiation. Proc Natl Acad Sci U S A. 2013 Nov 19; 110(47):19059-64. PMID: 24190997.
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    206. Keck KM, Kalpathy-Cramer J, Ataer-Cansizoglu E, You S, Erdogmus D, Chiang MF. Plus disease diagnosis in retinopathy of prematurity: vascular tortuosity as a function of distance from optic disk. Retina. 2013 Sep; 33(8):1700-7. PMID: 23538582.
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    207. Taliercio V, Logan JR, Kalpathy-Cramer J, Oteroa P. Developing a survey to assess factors that contribute to physician involvement in clinical research. Stud Health Technol Inform. 2013; 192:107-11. PMID: 23920525.
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    208. Awan M, Kalpathy-Cramer J, Gunn GB, Beadle BM, Garden AS, Phan J, Holliday E, Jones WE, Maani E, Patel A, Choi J, Clyburn V, Tantiwongkosi B, Rosenthal DI, Fuller CD. Prospective assessment of an atlas-based intervention combined with real-time software feedback in contouring lymph node levels and organs-at-risk in the head and neck: Quantitative assessment of conformance to expert delineation. Pract Radiat Oncol. 2013 Jul-Sep; 3(3):186-193. PMID: 24674363.
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    209. Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin JC, Pujol S, Bauer C, Jennings D, Fennessy F, Sonka M, Buatti J, Aylward S, Miller JV, Pieper S, Kikinis R. 3D Slicer as an image computing platform for the Quantitative Imaging Network. Magn Reson Imaging. 2012 Nov; 30(9):1323-41. PMID: 22770690.
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    210. Kahn CE, Kalpathy-Cramer J, Lam CA, Eldredge CE. Accurate determination of imaging modality using an ensemble of text- and image-based classifiers. J Digit Imaging. 2012 Feb; 25(1):37-42. PMID: 21748413.
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    211. Ataer-Cansizoglu E, You S, Kalpathy-Cramer J, Keck K, Chiang MF, Erdogmus D. OBSERVER AND FEATURE ANALYSIS ON DIAGNOSIS OF RETINOPATHY OF PREMATURITY. IEEE Int Workshop Mach Learn Signal Process. 2012; 1-6. PMID: 25003972.
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    212. Dizdaroglu B, Ataer-Cansizoglu E, Kalpathy-Cramer J, Keck K, Chiang MF, Erdogmus D. Level Sets for Retinal Vasculature Segmentation Using Seeds from Ridges and Edges from Phase Maps. IEEE Int Workshop Mach Learn Signal Process. 2012; 1-6. PMID: 24975694.
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    213. Wang SJ, Lemieux A, Kalpathy-Cramer J, Ord CB, Walker GV, Fuller CD, Kim JS, Thomas CR. Nomogram for predicting the benefit of adjuvant chemoradiotherapy for resected gallbladder cancer. J Clin Oncol. 2011 Dec 10; 29(35):4627-32. PMID: 22067404.
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    214. Kalpathy-Cramer J, Bedrick SD, Boccia K, Fuller CD. A pilot prospective feasibility study of organ-at-risk definition using Target Contour Testing/Instructional Computer Software (TaCTICS), a training and evaluation platform for radiotherapy target delineation. AMIA Annu Symp Proc. 2011; 2011:654-63. PMID: 22195121.
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    215. Wang SJ, Wissel AR, Ord CB, Kalpathy-Cramer J, Fuller CD, Holland JM, Gross ND. Individualized estimation of conditional survival for patients with head and neck cancer. Otolaryngol Head Neck Surg. 2011 Jul; 145(1):71-3. PMID: 21493289.
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    216. Wang SJ, Wissel AR, Luh JY, Fuller CD, Kalpathy-Cramer J, Thomas CR. An interactive tool for individualized estimation of conditional survival in rectal cancer. Ann Surg Oncol. 2011 Jun; 18(6):1547-52. PMID: 21207162.
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    217. You S, Bas E, Ataer-Cansizoglu E, Kalpathy-Cramer J, Erdogmus D. Principal curve based semi-automatic segmentation of organs in 3D-CT. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:6220-3. PMID: 22255760.
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    218. Kalpathy-Cramer J, Fuller CD. Target Contour Testing/Instructional Computer Software (TaCTICS): A Novel Training and Evaluation Platform for Radiotherapy Target Delineation. AMIA Annu Symp Proc. 2010 Nov 13; 2010:361-5. PMID: 21347001.
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    219. Wang SJ, Kalpathy-Cramer J, Kim JS, Fuller CD, Thomas CR. Parametric survival models for predicting the benefit of adjuvant chemoradiotherapy in gallbladder cancer. AMIA Annu Symp Proc. 2010 Nov 13; 2010:847-51. PMID: 21347098.
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    220. Kalpathy-Cramer J, Bedrick S, Radhouani S, Hersh W, Eggel I, Kahn CE, M?ller H. Retrieving similar cases from the medical literature - the ImageCLEF experience. Stud Health Technol Inform. 2010; 160(Pt 2):1189-93. PMID: 20841872.
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    221. Kalpathy-Cramer J, Hersh W, Kim JS, Thomas CR, Wang SJ. Survival prediction models for estimating the benefit of post-operative radiation therapy for gallbladder cancer and lung cancer. AMIA Annu Symp Proc. 2008 Nov 06; 348-52. PMID: 18999217.
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    222. Kalpathy-Cramer J, Hersh W. Effectiveness of Global Features for Automatic Medical Image Classification and Retrieval - the experiences of OHSU at ImageCLEFmed. Pattern Recognit Lett. 2008 Nov 01; 29(15):2032-2038. PMID: 19884953.
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    223. Hersh W, M?ller H, Kalpathy-Cramer J. The ImageCLEFmed medical image retrieval task test collection. J Digit Imaging. 2009 Dec; 22(6):648-55. PMID: 18769965.
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    224. M?ller H, Kalpathy-Cramer J, Hersh W, Geissbuhler A. Using medline queries to generate image retrieval tasks for benchmarking. Stud Health Technol Inform. 2008; 136:523-8. PMID: 18487784.
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    225. Bedrick S, Kalpathy-Cramer J. A Ferret-based gastrointestinal image retrieval system. AMIA Annu Symp Proc. 2007 Oct 11; 868. PMID: 18693969.
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    226. Kalpathy-Cramer J, Hersh W. Automatic image modality based classification and annotation to improve medical image retrieval. Stud Health Technol Inform. 2007; 129(Pt 2):1334-8. PMID: 17911931.
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