Colorado PROFILES, The Colorado Clinical and Translational Sciences Institute (CCTSI)
Keywords
Last Name
Institution

Kaustav Bera

TitlePost-Doctoral Fellow
InstitutionUniversity of Colorado Boulder
DepartmentChemical & Biological Engin

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Beedle AEM, Sharma V, Oliver-De La Cruz J, Jaganathan A, Albajar-Sigalés A, Max Yavitt F, Bera K, Andreu I, Granero-Moya I, Zalvidea D, Kechagia Z, Wiche G, Trepat X, Ivaska J, Anseth KS, Shenoy VB, Roca-Cusachs P. Fibrillar adhesion dynamics govern the timescales of nuclear mechano-response via the vimentin cytoskeleton. Nat Mater. 2026 Apr 29. PMID: 42056228.
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    2. Bera K, Bittencourt LK, Ramaiya N, Tirumani SH. Vibe Coding in Radiology: Claude Code and ChatGPT Codex Leading to the Rise of the Radiologist-Developer. J Am Coll Radiol. 2026 Apr 16. PMID: 42000013.
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    3. Afshari Mirak S, Bera K, Tirumani SH, Mohamed I, Bittencourt LK, Gupta A, Ramaiya N. Inspiring the next generation of academic radiologists: A leadership journey. Curr Probl Diagn Radiol. 2026 Apr 07. PMID: 41982030.
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    4. Bera K, Anseth KS. Cradles for maturation: Turning progenitor cells into functional intestinal epithelium. Cell Stem Cell. 2026 Mar 05; 33(3):363-365. PMID: 41795423.
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    5. Kirkpatrick BE, Dhand AP, Hibbard LP, Jaeschke MW, Yendamuri T, Nelson BR, Lee JS, Bera K, Zlotnick HM, Fox CA, Meurer-Zeman B, Miksch CE, Skillin NP, Blatchley MR, White TJ, Bowman CN, Burdick JA, Anseth KS. Ultrafast-relaxing and photopolymerizable PEG hydrogels enable viscoelasticity-mediated cell remodeling in synthetic matrices. Matter. 2026 Feb 04; 9(2). PMID: 41726314.
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    6. Ritchie B, Bera K, Sheng M, Mohamed I, Ramaiya N. Preparing radiology programs for the oral boards: A checklist for success informed by SWOT analysis. Curr Probl Diagn Radiol. 2026 May-Jun; 55(3):388-395. PMID: 41548995.
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    7. Bera K, McNally DL, Kirkpatrick BE, Petrich NR, Yavitt FM, Coulombe M, Quintero M, Skillin NP, Khang A, McGrath PS, Samuelson LC, Lele TP, Dempsey PJ, Anseth KS. Nuclei sense complex tissue shape and direct intestinal stem cell fate. bioRxiv. 2025 Oct 24. PMID: 41278926.
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    8. Hushka EA, Blatchley MR, Macdougall LJ, Yavitt FM, Kirkpatrick BE, Bera K, Dempsey PJ, Anseth KS. Fully Synthetic Hydrogels Promote Robust Crypt Formation in Intestinal Organoids. Adv Mater. 2025 Oct; 37(43):e09672. PMID: 40817630.
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    9. Tran AT, Wisniewski EO, Mistriotis P, Stoletov K, Parlani M, Amitrano A, Ifemembi B, Lee SJ, Bera K, Zhang Y, Tuntithavornwat S, Afthinos A, Kiepas A, Agarwal B, Nath S, Jamieson JJ, Zuo Y, Habib D, Wu PH, Martin SS, Gerecht S, Gu L, Lewis JD, Kalab P, Friedl P, Konstantopoulos K. Cytoplasmic anillin and Ect2 promote RhoA/myosin II-dependent confined migration and invasion. Nat Mater. 2025 Sep; 24(9):1476-1488. PMID: 40571734.
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    10. Vaidya P, Khorrami M, Bera K, Fu P, Delasos L, Gupta A, Barrera C, Pennell NA, Velcheti V, Madabhushi A. Computationally integrating radiology and pathology image features for predicting treatment benefit and outcome in lung cancer. NPJ Precis Oncol. 2025 Jun 04; 9(1):161. PMID: 40467921.
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    11. Jiang S, Bera K, Ohs ZA, Ekpunobi IO, Azar NR, Tirumani SH, Ramaiya NH. Age is more than just a number - Tailoring radiologic practice for the geriatric population. Curr Probl Diagn Radiol. 2025 Sep-Oct; 54(5):529-542. PMID: 40500592.
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    12. Batan D, Tseropoulos G, Kirkpatrick BE, Bishop C, Bera K, Khang A, Weiser-Evans M, Anseth KS. PTEN Regulates Myofibroblast Activation in Valvular Interstitial Cells Based on Subcellular Localization. Adv Biol (Weinh). 2025 Jul; 9(7):e2400540. PMID: 40229965.
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    13. Yavitt FM, Khang A, Bera K, McNally DL, Blatchley MR, Gallagher AP, Klein OD, Castillo-Azofeifa D, Dempsey PJ, Anseth KS. Engineered epithelial curvature controls Paneth cell localization in intestinal organoids. Cell Biomater. 2025 Apr 22; 1(3). PMID: 40270579.
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    14. Khang A, Barmore A, Tseropoulos G, Bera K, Batan D, Anseth KS. Automated prediction of fibroblast phenotypes using mathematical descriptors of cellular features. Nat Commun. 2025 Mar 22; 16(1):2841. PMID: 40121192.
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    15. Mew A, Chau E, Bera K, Ramaiya N, Tirumani SH. Recommendations from Imaging, Oncology, and Radiology Organizations to Guide Management in Prostate Cancer: Summary of Current Recommendations. Radiol Imaging Cancer. 2025 01; 7(1):e240091. PMID: 39792015.
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    16. Hunter JG, Bera K, Ciancibello L, Bukhari SMA, Sposato J, Gilani KA, Gilkeson R, Gupta A. Real-world impact of high-pitch helical CT on radiation exposure and image quality in infants being evaluated for cardiothoracic pathologies. Pediatr Radiol. 2025 01; 55(1):151-158. PMID: 39630241.
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    17. Summerville LE, Bera K, Ramaiya N. The productivity, participation, and recognition of women in academic radiology: Past, present, and future. Curr Probl Diagn Radiol. 2025 Jan-Feb; 54(1):97-101. PMID: 39608939.
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    18. Ni Q, Ge Z, Li Y, Shatkin G, Fu J, Sen A, Bera K, Yang Y, Wang Y, Wu Y, Nogueira Vasconcelos AC, Yan Y, Lin D, Feinberg AP, Konstantopoulos K, Sun SX. Cytoskeletal activation of NHE1 regulates mechanosensitive cell volume adaptation and proliferation. Cell Rep. 2024 12 24; 43(12):114992. PMID: 39579355.
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    19. Batan D, Tseropoulos G, Kirkpatrick BE, Bera K, Khang A, Weiser-Evans M, Anseth KS. PTEN Regulates Myofibroblast Activation in Valvular Interstitial Cells based on Subcellular Localization. bioRxiv. 2024 Nov 21. PMID: 39005262.
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    20. Jiang S, Bukhari SMA, Krishnan A, Bera K, Sharma A, Caovan D, Rosipko B, Gupta A. Deployment of Artificial Intelligence in Radiology: Strategies for Success. AJR Am J Roentgenol. 2025 Feb; 224(2):e2431898. PMID: 39475198.
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    21. Hunter JG, Bera K, Shah N, Bukhari SMA, Marshall C, Caovan D, Rosipko B, Gupta A. Real-World Performance of Pneumothorax-Detecting Artificial Intelligence Algorithm and its Impact on Radiologist Reporting Times. Acad Radiol. 2025 03; 32(3):1165-1174. PMID: 39477746.
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    22. Bukhari SMA, Hunter JG, Bera K, Tippareddy C, Johnson CR, Ravi S, Chakraborti S, Gilkeson RC, Gupta A. Clinical and imaging aspects of pulmonary embolism: a primer for radiologists. Clin Imaging. 2025 Jan; 117:110328. PMID: 39520730.
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    23. Zhao J, Bera K, Mohamed A, Li Q, Ramaiya N, Tirumani SH. Comparison of RECIST 1.1, mRECIST and PERCIST for assessment of peptide receptor radionuclide therapy treatment response in metastatic neuroendocrine tumors. Curr Probl Diagn Radiol. 2025 Mar-Apr; 54(2):228-232. PMID: 39389807.
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    24. Tippareddy C, Martinez OM, Benza AR, Bera K, Ramaiya N, Tirumani SH. From guidelines to radiology practice: navigating the 2023 ASCO guidelines for advanced gastroesophageal cancer and beyond. Abdom Radiol (NY). 2025 01; 50(1):78-93. PMID: 39123051.
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    25. Hushka EA, Blatchley MR, Macdougall LJ, Yavitt FM, Kirkpatrick BE, Bera K, Dempsey PJ, Anseth KS. Fully synthetic hydrogels promote robust crypt formation in intestinal organoids. bioRxiv. 2024 Jul 10. PMID: 39026840.
      View in: PubMed
    26. Hiremath A, Viswanathan VS, Bera K, Shiradkar R, Yuan L, Armitage K, Gilkeson R, Ji M, Fu P, Gupta A, Lu C, Madabhushi A. Deep learning reveals lung shape differences on baseline chest CT between mild and severe COVID-19: A multi-site retrospective study. Comput Biol Med. 2024 07; 177:108643. PMID: 38815485.
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    27. Ohnsorg ML, Mash KM, Khang A, Rao VV, Kirkpatrick BE, Bera K, Anseth KS. Nonlinear Elastic Bottlebrush Polymer Hydrogels Modulate Actomyosin Mediated Protrusion Formation in Mesenchymal Stromal Cells. Adv Mater. 2024 07; 36(28):e2403198. PMID: 38655776.
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    28. Chau E, Mew A, Bera K, Jiang S, Ramaiya N, Gilkeson R. Emergency department imaging utilization post-transcatheter aortic valve replacement: single institution 7-year experience. Emerg Radiol. 2024 Jun; 31(3):349-357. PMID: 38649665.
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    29. Ni Q, Ge Z, Li Y, Shatkin G, Fu J, Bera K, Yang Y, Wang Y, Sen A, Wu Y, Vasconcelos ACN, Feinberg AP, Konstantopoulos K, Sun SX. Cytoskeletal activation of NHE1 regulates mechanosensitive cell volume adaptation and proliferation. bioRxiv. 2024 Apr 18. PMID: 37693593.
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    30. Bera K, Ramaiya N, Paspulati RM, Nakamoto D, Tirumani SH. 3.0-T MR-guided transgluteal in-bore-targeted prostate biopsy under local anesthesia in patients without rectal access: a single-institute experience and review of literature. Abdom Radiol (NY). 2024 04; 49(4):1223-1230. PMID: 38383816.
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    31. Tran AT, Wisniewski EO, Mistriotis P, Stoletov K, Parlani M, Amitrano A, Ifemembi B, Lee SJ, Bera K, Zhang Y, Tuntithavornwat S, Afthinos A, Kiepas A, Jamieson JJ, Zuo Y, Habib D, Wu PH, Martin SS, Gerecht S, Gu L, Lewis JD, Kalab P, Friedl P, Konstantopoulos K. Cytoplasmic accumulation and plasma membrane association of anillin and Ect2 promote confined migration and invasion. Res Sq. 2024 Jan 10. PMID: 38260442.
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    32. Mohamed I, Bera K, Ramaiya N. The Undermined ACGME Subcompetency: A Roadmap for Radiology Residency Programs to Foster Residents-as-Educators. Acad Radiol. 2024 03; 31(3):1189-1197. PMID: 38052673.
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    33. Beedle AEM, Jaganathan A, Albajar-Sigalés A, Yavitt FM, Bera K, Andreu I, Granero-Moya I, Zalvidea D, Kechagia Z, Wiche G, Trepat X, Ivaska J, Anseth KS, Shenoy VB, Roca-Cusachs P. Fibrillar adhesion dynamics govern the timescales of nuclear mechano-response via the vimentin cytoskeleton. bioRxiv. 2023 Nov 11. PMID: 37986921.
      View in: PubMed
    34. Bera K, O'Connor G, Jiang S, Tirumani SH, Ramaiya N. Analysis of ChatGPT publications in radiology: Literature so far. Curr Probl Diagn Radiol. 2024 Mar-Apr; 53(2):215-225. PMID: 37891083.
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    35. Doddi S, Hibshman T, Salichs O, Bera K, Tippareddy C, Ramaiya N, Tirumani SH. Assessing appropriate responses to ACR urologic imaging scenarios using ChatGPT and Bard. Curr Probl Diagn Radiol. 2024 Mar-Apr; 53(2):226-229. PMID: 37891086.
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    36. Tippareddy C, Jiang S, Bera K, Ramaiya N. Radiology Reading Room for the Future: Harnessing the Power of Large Language Models Like ChatGPT. Curr Probl Diagn Radiol. 2025 Jul-Aug; 54(4):408-413. PMID: 37758604.
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    37. Hunter JG, Pierce JD, Gilkeson RC, Bera K, Gupta A. Clinical Implementation of an Artificial Intelligence Tool in the Detection and Management of Pneumothoraces in Patients With COVID-19. Cureus. 2023 Jul; 15(7):e42509. PMID: 37637593.
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    38. DeSilvio T, Antunes JT, Bera K, Chirra P, Le H, Liska D, Stein SL, Marderstein E, Hall W, Paspulati R, Gollamudi J, Purysko AS, Viswanath SE. Region-specific deep learning models for accurate segmentation of rectal structures on post-chemoradiation T2w MRI: a multi-institutional, multi-reader study. Front Med (Lausanne). 2023; 10:1149056. PMID: 37250635.
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    39. Anderson W, Bera K, Smith D, Tirumani SH, Ramaiya N. Emergency department imaging utilization of cancer patients treated with bevacizumab: single-institution 8-year experience. Emerg Radiol. 2023 Aug; 30(4):407-418. PMID: 37129686.
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    40. Hunter JG, Prajapati P, Bera K, Gupta A, Gupta A. Imaging Depiction of Hypoxic Pulmonary Vasoconstriction Using Dual-Energy CT. Cureus. 2023 Mar; 15(3):e36551. PMID: 37102002.
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    41. Chirra P, Sharma A, Bera K, Cohn HM, Kurowski JA, Amann K, Rivero MJ, Madabhushi A, Lu C, Paspulati R, Stein SL, Katz JA, Viswanath SE, Dave M. Integrating Radiomics With Clinicoradiological Scoring Can Predict High-Risk Patients Who Need Surgery in Crohn's Disease: A Pilot Study. Inflamm Bowel Dis. 2023 03 01; 29(3):349-358. PMID: 36250776.
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    42. Iyer S, Ismail M, Tamrazi B, Salloum R, de Blank P, Margol A, Correa R, Chen J, Bera K, Statsevych V, Ho ML, Vaidya P, Verma R, Hawes D, Judkins A, Fu P, Madabhushi A, Tiwari P. Novel MRI deformation-heterogeneity radiomic features are associated with molecular subgroups and overall survival in pediatric medulloblastoma: Preliminary findings from a multi-institutional study. Front Oncol. 2022; 12:915143. PMID: 36620600.
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    43. Alilou M, Khorrami M, Prasanna P, Bera K, Gupta A, Viswanathan VS, Patil P, Velu PD, Fu P, Velcheti V, Madabhushi A. A tumor vasculature-based imaging biomarker for predicting response and survival in patients with lung cancer treated with checkpoint inhibitors. Sci Adv. 2022 Nov 25; 8(47):eabq4609. PMID: 36427313.
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    44. Doddi S, Bera K, Myers A, Ramaiya N, Tirumani SH. Development and Implementation of Integrated Radiologist-Speech Pathologist Report for Modified Barium Swallow Study: Experience at a Multi-hospital Single Health Care System. Curr Probl Diagn Radiol. 2023 Mar-Apr; 52(2):89-92. PMID: 36494234.
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    45. Bera K, Kiepas A, Godet I, Li Y, Mehta P, Ifemembi B, Paul CD, Sen A, Serra SA, Stoletov K, Tao J, Shatkin G, Lee SJ, Zhang Y, Boen A, Mistriotis P, Gilkes DM, Lewis JD, Fan CM, Feinberg AP, Valverde MA, Sun SX, Konstantopoulos K. Extracellular fluid viscosity enhances cell migration and cancer dissemination. Nature. 2022 Nov; 611(7935):365-373. PMID: 36323783.
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    46. Monabbati S, Leo P, Bera K, Michael CW, Nezami BG, Harbhajanka A, Madabhushi A. Automated analysis of computerized morphological features of cell clusters associated with malignancy on bile duct brushing whole slide images. Cancer Med. 2023 03; 12(5):6365-6378. PMID: 36281473.
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    47. Zhang Y, Li Y, Thompson KN, Stoletov K, Yuan Q, Bera K, Lee SJ, Zhao R, Kiepas A, Wang Y, Mistriotis P, Serra SA, Lewis JD, Valverde MA, Martin SS, Sun SX, Konstantopoulos K. Polarized NHE1 and SWELL1 regulate migration direction, efficiency and metastasis. Nat Commun. 2022 10 17; 13(1):6128. PMID: 36253369.
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    48. Braman N, Prasanna P, Bera K, Alilou M, Khorrami M, Leo P, Etesami M, Vulchi M, Turk P, Gupta A, Jain P, Fu P, Pennell N, Velcheti V, Abraham J, Plecha D, Madabhushi A. Novel Radiomic Measurements of Tumor-Associated Vasculature Morphology on Clinical Imaging as a Biomarker of Treatment Response in Multiple Cancers. Clin Cancer Res. 2022 10 14; 28(20):4410-4424. PMID: 35727603.
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    49. Afthinos A, Bera K, Chen J, Ozcelikkale A, Amitrano A, Choudhury MI, Huang R, Pachidis P, Mistriotis P, Chen Y, Konstantopoulos K. Migration and 3D Traction Force Measurements inside Compliant Microchannels. Nano Lett. 2022 09 28; 22(18):7318-7327. PMID: 36112517.
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    50. Bera K, Kiepas A, Zhang Y, Sun SX, Konstantopoulos K. The interplay between physical cues and mechanosensitive ion channels in cancer metastasis. Front Cell Dev Biol. 2022; 10:954099. PMID: 36158191.
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    51. Maity D, Bera K, Li Y, Ge Z, Ni Q, Konstantopoulos K, Sun SX. Extracellular Hydraulic Resistance Enhances Cell Migration. Adv Sci (Weinh). 2022 Oct; 9(29):e2200927. PMID: 36031406.
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    52. Ismail M, Prasanna P, Bera K, Statsevych V, Hill V, Singh G, Partovi S, Beig N, McGarry S, Laviolette P, Ahluwalia M, Madabhushi A, Tiwari P. Radiomic Deformation and Textural Heterogeneity (R-DepTH) Descriptor to Characterize Tumor Field Effect: Application to Survival Prediction in Glioblastoma. IEEE Trans Med Imaging. 2022 07; 41(7):1764-1777. PMID: 35108202.
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    53. Laukamp KR, Dastmalchian S, Tandon YK, Ciancibello L, Pennig L, Lennartz S, Al-Kindi S, Rajagopalan S, Bera K, Hokamp NG, Gilkeson R, Gupta A. Imaging of the Left Atrial Appendage Before Occluder Device Placement: Evaluation of Virtual Monoenergetic Images in a Single-Bolus Dual-Phase Protocol. J Comput Assist Tomogr. 2022 Sep-Oct 01; 46(5):735-741. PMID: 35723620.
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    54. Gupta A, Bera K, Kikano E, Pierce JD, Gan J, Rajdev M, Ciancibello LM, Gupta A, Rajagopalan S, Gilkeson RC. Coronary Artery Calcium Scoring: Current Status and Future Directions. Radiographics. 2022 Jul-Aug; 42(4):947-967. PMID: 35657766.
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    55. Wang X, Barrera C, Bera K, Viswanathan VS, Azarianpour-Esfahani S, Koyuncu C, Velu P, Feldman MD, Yang M, Fu P, Schalper KA, Mahdi H, Lu C, Velcheti V, Madabhushi A. Spatial interplay patterns of cancer nuclei and tumor-infiltrating lymphocytes (TILs) predict clinical benefit for immune checkpoint inhibitors. Sci Adv. 2022 Jun 03; 8(22):eabn3966. PMID: 35648850.
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    56. Vaidya P, Bera K, Linden PA, Gupta A, Rajiah PS, Jones DR, Bott M, Pass H, Gilkeson R, Jacono F, Hsieh KL, Lan GY, Velcheti V, Madabhushi A. Combined Radiomic and Visual Assessment for Improved Detection of Lung Adenocarcinoma Invasiveness on Computed Tomography Scans: A Multi-Institutional Study. Front Oncol. 2022; 12:902056. PMID: 35707362.
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    57. Corredor G, Toro P, Koyuncu C, Lu C, Buzzy C, Bera K, Fu P, Mehrad M, Ely KA, Mokhtari M, Yang K, Chute D, Adelstein DJ, Thompson LDR, Bishop JA, Faraji F, Thorstad W, Castro P, Sandulache V, Koyfman SA, Lewis JS, Madabhushi A. An Imaging Biomarker of Tumor-Infiltrating Lymphocytes to Risk-Stratify Patients With HPV-Associated Oropharyngeal Cancer. J Natl Cancer Inst. 2022 04 11; 114(4):609-617. PMID: 34850048.
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    58. Vaidya P, Alilou M, Hiremath A, Gupta A, Bera K, Furin J, Armitage K, Gilkeson R, Yuan L, Fu P, Lu C, Ji M, Madabhushi A. An End-to-End Integrated Clinical and CT-Based Radiomics Nomogram for Predicting Disease Severity and Need for Ventilator Support in COVID-19 Patients: A Large Multisite Retrospective Study. Front Radiol. 2022; 2. PMID: 36437821.
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    59. Wilde DC, Castro PD, Bera K, Lai S, Madabhushi A, Corredor G, Koyuncu C, Lewis JS, Lu C, Frederick MJ, Frederick AM, Haugen AE, Zevallos JP, Sturgis EM, Shi J, Huang AT, Hernandez DJ, Skinner HD, Kemnade JO, Yu W, Sikora AG, Sandulache VC. Oropharyngeal cancer outcomes correlate with p16 status, multinucleation and immune infiltration. Mod Pathol. 2022 08; 35(8):1045-1054. PMID: 35184149.
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    60. Azarianpour S, Corredor G, Bera K, Leo P, Fu P, Toro P, Joehlin-Price A, Mokhtari M, Mahdi H, Madabhushi A. Computational image features of immune architecture is associated with clinical benefit and survival in gynecological cancers across treatment modalities. J Immunother Cancer. 2022 02; 10(2). PMID: 35115363.
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    61. Hiremath A, Bera K, Yuan L, Vaidya P, Alilou M, Furin J, Armitage K, Gilkeson R, Ji M, Fu P, Gupta A, Lu C, Madabhushi A. Integrated Clinical and CT Based Artificial Intelligence Nomogram for Predicting Severity and Need for Ventilator Support in COVID-19 Patients: A Multi-Site Study. IEEE J Biomed Health Inform. 2021 11; 25(11):4110-4118. PMID: 34388099.
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    62. Jain P, Khorrami M, Gupta A, Rajiah P, Bera K, Viswanathan VS, Fu P, Dowlati A, Madabhushi A. Novel Non-Invasive Radiomic Signature on CT Scans Predicts Response to Platinum-Based Chemotherapy and Is Prognostic of Overall Survival in Small Cell Lung Cancer. Front Oncol. 2021; 11:744724. PMID: 34745966.
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    63. Bera K, Braman N, Gupta A, Velcheti V, Madabhushi A. Predicting cancer outcomes with radiomics and artificial intelligence in radiology. Nat Rev Clin Oncol. 2022 02; 19(2):132-146. PMID: 34663898.
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    64. Li H, Bera K, Toro P, Fu P, Zhang Z, Lu C, Feldman M, Ganesan S, Goldstein LJ, Davidson NE, Glasgow A, Harbhajanka A, Gilmore H, Madabhushi A. Collagen fiber orientation disorder from H&E images is prognostic for early stage breast cancer: clinical trial validation. NPJ Breast Cancer. 2021 Aug 06; 7(1):104. PMID: 34362928.
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    65. Corredor G, Toro P, Bera K, Rasmussen D, Viswanathan VS, Buzzy C, Fu P, Barton LM, Stroberg E, Duval E, Gilmore H, Mukhopadhyay S, Madabhushi A. Computational pathology reveals unique spatial patterns of immune response in H&E images from COVID-19 autopsies: preliminary findings. J Med Imaging (Bellingham). 2021 Jan; 8(Suppl 1):017501. PMID: 34268443.
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    66. Wang X, Bera K, Barrera C, Zhou Y, Lu C, Vaidya P, Fu P, Yang M, Schmid RA, Berezowska S, Choi H, Velcheti V, Madabhushi A. A prognostic and predictive computational pathology image signature for added benefit of adjuvant chemotherapy in early stage non-small-cell lung cancer. EBioMedicine. 2021 Jul; 69:103481. PMID: 34265509.
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    67. Yankaskas CL, Bera K, Stoletov K, Serra SA, Carrillo-Garcia J, Tuntithavornwat S, Mistriotis P, Lewis JD, Valverde MA, Konstantopoulos K. The fluid shear stress sensor TRPM7 regulates tumor cell intravasation. Sci Adv. 2021 Jul; 7(28). PMID: 34244134.
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    68. Alilou M, Prasanna P, Bera K, Gupta A, Rajiah P, Yang M, Jacono F, Velcheti V, Gilkeson R, Linden P, Madabhushi A. A Novel Nodule Edge Sharpness Radiomic Biomarker Improves Performance of Lung-RADS for Distinguishing Adenocarcinomas from Granulomas on Non-Contrast CT Scans. Cancers (Basel). 2021 Jun 03; 13(11). PMID: 34205005.
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    69. Leo P, Janowczyk A, Elliott R, Janaki N, Bera K, Shiradkar R, Farré X, Fu P, El-Fahmawi A, Shahait M, Kim J, Lee D, Yamoah K, Rebbeck TR, Khani F, Robinson BD, Eklund L, Jambor I, Merisaari H, Ettala O, Taimen P, Aronen HJ, Boström PJ, Tewari A, Magi-Galluzzi C, Klein E, Purysko A, Nc Shih N, Feldman M, Gupta S, Lal P, Madabhushi A. Computer extracted gland features from H&E predicts prostate cancer recurrence comparably to a genomic companion diagnostic test: a large multi-site study. NPJ Precis Oncol. 2021 May 03; 5(1):35. PMID: 33941830.
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    70. Leo P, Chandramouli S, Farré X, Elliott R, Janowczyk A, Bera K, Fu P, Janaki N, El-Fahmawi A, Shahait M, Kim J, Lee D, Yamoah K, Rebbeck TR, Khani F, Robinson BD, Shih NNC, Feldman M, Gupta S, McKenney J, Lal P, Madabhushi A. Computationally Derived Cribriform Area Index from Prostate Cancer Hematoxylin and Eosin Images Is Associated with Biochemical Recurrence Following Radical Prostatectomy and Is Most Prognostic in Gleason Grade Group 2. Eur Urol Focus. 2021 Jul; 7(4):722-732. PMID: 33941504.
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    71. Zhao R, Cui S, Ge Z, Zhang Y, Bera K, Zhu L, Sun SX, Konstantopoulos K. Hydraulic resistance induces cell phenotypic transition in confinement. Sci Adv. 2021 04; 7(17). PMID: 33893091.
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    72. Eck B, Chirra PV, Muchhala A, Hall S, Bera K, Tiwari P, Madabhushi A, Seiberlich N, Viswanath SE. Prospective Evaluation of Repeatability and Robustness of Radiomic Descriptors in Healthy Brain Tissue Regions In Vivo Across Systematic Variations in T2-Weighted Magnetic Resonance Imaging Acquisition Parameters. J Magn Reson Imaging. 2021 09; 54(3):1009-1021. PMID: 33860966.
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    73. Koyuncu CF, Lu C, Bera K, Zhang Z, Xu J, Toro P, Corredor G, Chute D, Fu P, Thorstad WL, Faraji F, Bishop JA, Mehrad M, Castro PD, Sikora AG, Thompson LD, Chernock RD, Lang Kuhs KA, Luo J, Sandulache V, Adelstein DJ, Koyfman S, Lewis JS, Madabhushi A. Computerized tumor multinucleation index (MuNI) is prognostic in p16+ oropharyngeal carcinoma. J Clin Invest. 2021 04 15; 131(8). PMID: 33651718.
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    74. Khorrami M, Bera K, Thawani R, Rajiah P, Gupta A, Fu P, Linden P, Pennell N, Jacono F, Gilkeson RC, Velcheti V, Madabhushi A. Distinguishing granulomas from adenocarcinomas by integrating stable and discriminating radiomic features on non-contrast computed tomography scans. Eur J Cancer. 2021 05; 148:146-158. PMID: 33743483.
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    75. Beig N, Singh S, Bera K, Prasanna P, Singh G, Chen J, Saeed Bamashmos A, Barnett A, Hunter K, Statsevych V, Hill VB, Varadan V, Madabhushi A, Ahluwalia MS, Tiwari P. Sexually dimorphic radiogenomic models identify distinct imaging and biological pathways that are prognostic of overall survival in glioblastoma. Neuro Oncol. 2021 02 25; 23(2):251-263. PMID: 33068415.
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    76. Liu JTC, Glaser AK, Bera K, True LD, Reder NP, Eliceiri KW, Madabhushi A. Harnessing non-destructive 3D pathology. Nat Biomed Eng. 2021 03; 5(3):203-218. PMID: 33589781.
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    77. Beig N, Bera K, Tiwari P. Introduction to radiomics and radiogenomics in neuro-oncology: implications and challenges. Neurooncol Adv. 2020 Dec; 2(Suppl 4):iv3-iv14. PMID: 33521636.
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    78. Gupta A, Kikano EG, Bera K, Baruah D, Saboo SS, Lennartz S, Hokamp NG, Gholamrezanezhad A, Gilkeson RC, Laukamp KR. Dual energy imaging in cardiothoracic pathologies: A primer for radiologists and clinicians. Eur J Radiol Open. 2021; 8:100324. PMID: 33532519.
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    79. Ismail M, Hill V, Statsevych V, Mason E, Correa R, Prasanna P, Singh G, Bera K, Thawani R, Ahluwalia M, Madabhushi A, Tiwari P. Can Tumor Location on Pre-treatment MRI Predict Likelihood of Pseudo-Progression vs. Tumor Recurrence in Glioblastoma?-A Feasibility Study. Front Comput Neurosci. 2020; 14:563439. PMID: 33381018.
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    80. Lu C, Koyuncu C, Corredor G, Prasanna P, Leo P, Wang X, Janowczyk A, Bera K, Lewis J, Velcheti V, Madabhushi A. Feature-driven local cell graph (FLocK): New computational pathology-based descriptors for prognosis of lung cancer and HPV status of oropharyngeal cancers. Med Image Anal. 2021 02; 68:101903. PMID: 33352373.
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    81. Verma R, Correa R, Hill VB, Statsevych V, Bera K, Beig N, Mahammedi A, Madabhushi A, Ahluwalia M, Tiwari P. Tumor Habitat-derived Radiomic Features at Pretreatment MRI That Are Prognostic for Progression-free Survival in Glioblastoma Are Associated with Key Morphologic Attributes at Histopathologic Examination: A Feasibility Study. Radiol Artif Intell. 2020 Nov; 2(6):e190168. PMID: 33330847.
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    82. Bera K, Katz I, Madabhushi A. Reimagining T Staging Through Artificial Intelligence and Machine Learning Image Processing Approaches in Digital Pathology. JCO Clin Cancer Inform. 2020 11; 4:1039-1050. PMID: 33166198.
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    83. Lu C, Bera K, Wang X, Prasanna P, Xu J, Janowczyk A, Beig N, Yang M, Fu P, Lewis J, Choi H, Schmid RA, Berezowska S, Schalper K, Rimm D, Velcheti V, Madabhushi A. A prognostic model for overall survival of patients with early-stage non-small cell lung cancer: a multicentre, retrospective study. Lancet Digit Health. 2020 11; 2(11):e594-e606. PMID: 33163952.
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    84. Vaidya P, Bera K, Patil PD, Gupta A, Jain P, Alilou M, Khorrami M, Velcheti V, Madabhushi A. Novel, non-invasive imaging approach to identify patients with advanced non-small cell lung cancer at risk of hyperprogressive disease with immune checkpoint blockade. J Immunother Cancer. 2020 10; 8(2). PMID: 33051342.
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    85. Wisniewski EO, Mistriotis P, Bera K, Law RA, Zhang J, Nikolic M, Weiger M, Parlani M, Tuntithavornwat S, Afthinos A, Zhao R, Wirtz D, Kalab P, Scarcelli G, Friedl P, Konstantopoulos K. Dorsoventral polarity directs cell responses to migration track geometries. Sci Adv. 2020 07; 6(31):eaba6505. PMID: 32789173.
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    86. Alvarez-Jimenez C, Antunes JT, Talasila N, Bera K, Brady JT, Gollamudi J, Marderstein E, Kalady MF, Purysko A, Willis JE, Stein S, Friedman K, Paspulati R, Delaney CP, Romero E, Madabhushi A, Viswanath SE. Radiomic Texture and Shape Descriptors of the Rectal Environment on Post-Chemoradiation T2-Weighted MRI are Associated with Pathologic Tumor Stage Regression in Rectal Cancers: A Retrospective, Multi-Institution Study. Cancers (Basel). 2020 Jul 24; 12(8). PMID: 32722082.
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    87. Antunes JT, Ofshteyn A, Bera K, Wang EY, Brady JT, Willis JE, Friedman KA, Marderstein EL, Kalady MF, Stein SL, Purysko AS, Paspulati R, Gollamudi J, Madabhushi A, Viswanath SE. Radiomic Features of Primary Rectal Cancers on Baseline T2 -Weighted MRI Are Associated With Pathologic Complete Response to Neoadjuvant Chemoradiation: A Multisite Study. J Magn Reson Imaging. 2020 11; 52(5):1531-1541. PMID: 32216127.
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    88. Khorrami M, Bera K, Leo P, Vaidya P, Patil P, Thawani R, Velu P, Rajiah P, Alilou M, Choi H, Feldman MD, Gilkeson RC, Linden P, Fu P, Pass H, Velcheti V, Madabhushi A. Stable and discriminating radiomic predictor of recurrence in early stage non-small cell lung cancer: Multi-site study. Lung Cancer. 2020 04; 142:90-97. PMID: 32120229.
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    89. Beig N, Bera K, Prasanna P, Antunes J, Correa R, Singh S, Saeed Bamashmos A, Ismail M, Braman N, Verma R, Hill VB, Statsevych V, Ahluwalia MS, Varadan V, Madabhushi A, Tiwari P. Radiogenomic-Based Survival Risk Stratification of Tumor Habitat on Gd-T1w MRI Is Associated with Biological Processes in Glioblastoma. Clin Cancer Res. 2020 04 15; 26(8):1866-1876. PMID: 32079590.
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    90. Vaidya P, Bera K, Gupta A, Wang X, Corredor G, Fu P, Beig N, Prasanna P, Patil P, Velu P, Rajiah P, Gilkeson R, Feldman M, Choi H, Velcheti V, Madabhushi A. CT derived radiomic score for predicting the added benefit of adjuvant chemotherapy following surgery in Stage I, II resectable Non-Small Cell Lung Cancer: a retrospective multi-cohort study for outcome prediction. Lancet Digit Health. 2020 03; 2(3):e116-e128. PMID: 32123864.
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    91. Vaidya P, Bera K, Gupta A, Wang X, Corredor G, Fu P, Beig N, Prasanna P, Patil PD, Velu PD, Rajiah P, Gilkeson R, Feldman MD, Choi H, Velcheti V, Madabhushi A. CT derived radiomic score for predicting the added benefit of adjuvant chemotherapy following surgery in stage I, II resectable non-small cell lung cancer: a retrospective multicohort study for outcome prediction. Lancet Digit Health. 2020 03; 2(3):e116-e128. PMID: 33334576.
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    92. Khorrami M, Prasanna P, Gupta A, Patil P, Velu PD, Thawani R, Corredor G, Alilou M, Bera K, Fu P, Feldman M, Velcheti V, Madabhushi A. Changes in CT Radiomic Features Associated with Lymphocyte Distribution Predict Overall Survival and Response to Immunotherapy in Non-Small Cell Lung Cancer. Cancer Immunol Res. 2020 01; 8(1):108-119. PMID: 31719058.
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    93. Mistriotis P, Wisniewski EO, Bera K, Keys J, Li Y, Tuntithavornwat S, Law RA, Perez-Gonzalez NA, Erdogmus E, Zhang Y, Zhao R, Sun SX, Kalab P, Lammerding J, Konstantopoulos K. Confinement hinders motility by inducing RhoA-mediated nuclear influx, volume expansion, and blebbing. J Cell Biol. 2019 12 02; 218(12):4093-4111. PMID: 31690619.
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    94. Li H, Whitney J, Bera K, Gilmore H, Thorat MA, Badve S, Madabhushi A. Quantitative nuclear histomorphometric features are predictive of Oncotype DX risk categories in ductal carcinoma in situ: preliminary findings. Breast Cancer Res. 2019 10 17; 21(1):114. PMID: 31623652.
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    95. Khorrami M, Jain P, Bera K, Alilou M, Thawani R, Patil P, Ahmad U, Murthy S, Stephans K, Fu P, Velcheti V, Madabhushi A. Corrigendum to "Predicting pathologic response to neoadjuvant chemoradiation in resectable stage III non-small cell lung cancer patients using computed tomography radiomic features" [Lung Cancer 135 (September) (2019) 1-9]. Lung Cancer. 2019 Oct; 136:156. PMID: 31564290.
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    96. Bera K, Schalper KA, Rimm DL, Velcheti V, Madabhushi A. Artificial intelligence in digital pathology - new tools for diagnosis and precision oncology. Nat Rev Clin Oncol. 2019 11; 16(11):703-715. PMID: 31399699.
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    97. Khorrami M, Jain P, Bera K, Alilou M, Thawani R, Patil P, Ahmad U, Murthy S, Stephans K, Fu P, Velcheti V, Madabhushi A. Predicting pathologic response to neoadjuvant chemoradiation in resectable stage III non-small cell lung cancer patients using computed tomography radiomic features. Lung Cancer. 2019 09; 135:1-9. PMID: 31446979.
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    98. Braman N, Prasanna P, Whitney J, Singh S, Beig N, Etesami M, Bates DDB, Gallagher K, Bloch BN, Vulchi M, Turk P, Bera K, Abraham J, Sikov WM, Somlo G, Harris LN, Gilmore H, Plecha D, Varadan V, Madabhushi A. Association of Peritumoral Radiomics With Tumor Biology and Pathologic Response to Preoperative Targeted Therapy for HER2 (ERBB2)-Positive Breast Cancer. JAMA Netw Open. 2019 04 05; 2(4):e192561. PMID: 31002322.
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    99. Khorrami M, Khunger M, Zagouras A, Patil P, Thawani R, Bera K, Rajiah P, Fu P, Velcheti V, Madabhushi A. Combination of Peri- and Intratumoral Radiomic Features on Baseline CT Scans Predicts Response to Chemotherapy in Lung Adenocarcinoma. Radiol Artif Intell. 2019 Mar 20; 1(2):e180012. PMID: 32076657.
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    100. Beig N, Khorrami M, Alilou M, Prasanna P, Braman N, Orooji M, Rakshit S, Bera K, Rajiah P, Ginsberg J, Donatelli C, Thawani R, Yang M, Jacono F, Tiwari P, Velcheti V, Gilkeson R, Linden P, Madabhushi A. Perinodular and Intranodular Radiomic Features on Lung CT Images Distinguish Adenocarcinomas from Granulomas. Radiology. 2019 03; 290(3):783-792. PMID: 30561278.
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    101. Bera K, Velcheti V, Madabhushi A. Novel Quantitative Imaging for Predicting Response to Therapy: Techniques and Clinical Applications. Am Soc Clin Oncol Educ Book. 2018 May 23; 38:1008-1018. PMID: 30231314.
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    102. Beig N, Patel J, Prasanna P, Hill V, Gupta A, Correa R, Bera K, Singh S, Partovi S, Varadan V, Ahluwalia M, Madabhushi A, Tiwari P. Radiogenomic analysis of hypoxia pathway is predictive of overall survival in Glioblastoma. Sci Rep. 2018 01 08; 8(1):7. PMID: 29311558.
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    103. Banna M, Bera K, Sochol R, Lin L, Najjaran H, Sadiq R, Hoorfar M. 3D Printing-Based Integrated Water Quality Sensing System. Sensors (Basel). 2017 Jun 08; 17(6). PMID: 28594387.
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    104. Ranjan A, Bera K, Iwakuma T. Murine double minute 2, a potential p53-independent regulator of liver cancer metastasis. Hepatoma Res. 2016; 2:114-121. PMID: 28944296.
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    105. Bera K, Seth B, Biswas R. Conversational learning among medical students: harnessing the power of web 2.0 through user driven healthcare. Ann Neurosci. 2013 Apr; 20(2):37-8. PMID: 25206009.
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    106. Bera K, Biswas T. Revised hippocratic oath-a step forward in the right direction. Natl Med J India. 2011 Mar-Apr; 24(2):121-2. PMID: 21668067.
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