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Douglas P Shepherd

TitleAsst Professor Adjoint
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM-PHARM General Operations

    Collapse Research 
    Collapse research activities and funding
    RF1MH128867     (SHEPHERD, DOUGLAS)Sep 15, 2021 - Sep 14, 2024
    NIH
    Scalable 3D molecular imaging and data analysis for cell census generation
    Role: Principal Investigator
    R56HL068702     (ABMAN, STEVEN HERBERT)Sep 20, 2018 - Jul 8, 2019
    NIH
    Role of VEGF in Perinatal Hypertension
    Role: Co-Principal Investigator
    R01HL068702     (ABMAN, STEVEN HERBERT)Jun 20, 2001 - Jun 30, 2022
    NIH
    Role of VEGF in Perinatal Hypertension
    Role: Co-Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    List All   |   Timeline
    1. Saurabh A, Brown PT, Bryan JS, Fox ZR, Kruithoff R, Thompson C, Kural C, Shepherd DP, Press? S. A Structured Illumination Microscopy Framework with Spatial-Domain Noise Propagation. bioRxiv. 2024 Mar 06. PMID: 38106139.
      View in: PubMed
    2. Chen B, Chang BJ, Roudot P, Zhou F, Sapoznik E, Marlar-Pavey M, Hayes JB, Brown PT, Zeng CW, Lambert T, Friedman JR, Zhang CL, Burnette DT, Shepherd DP, Dean KM, Fiolka RP. Resolution doubling in light-sheet microscopy via oblique plane structured illumination. Nat Methods. 2022 11; 19(11):1419-1426. PMID: 36280718.
      View in: PubMed
    3. Supekar OD, Sias A, Hansen SR, Martinez G, Peet GC, Peng X, Bright VM, Hughes EG, Restrepo D, Shepherd DP, Welle CG, Gopinath JT, Gibson EA. Miniature structured illumination microscope for in vivo 3D imaging of brain structures with optical sectioning. Biomed Opt Express. 2022 Apr 01; 13(4):2530-2541. PMID: 35519247.
      View in: PubMed
    4. Brown PT, Kruithoff R, Seedorf GJ, Shepherd DP. Multicolor structured illumination microscopy and quantitative control of polychromatic light with a digital micromirror device. Biomed Opt Express. 2021 Jun 01; 12(6):3700-3716. PMID: 34221689.
      View in: PubMed
    5. Pinkard H, Stuurman N, Ivanov IE, Anthony NM, Ouyang W, Li B, Yang B, Tsuchida MA, Chhun B, Zhang G, Mei R, Anderson M, Shepherd DP, Hunt-Isaak I, Dunn RL, Jahr W, Kato S, Royer LA, Thiagarajah JR, Eliceiri KW, Lundberg E, Mehta SB, Waller L. Pycro-Manager: open-source software for customized and reproducible microscope control. Nat Methods. 2021 03; 18(3):226-228. PMID: 33674797.
      View in: PubMed
    6. Seedorf G, Kim C, Wallace B, Mandell EW, Nowlin T, Shepherd D, Abman SH. rhIGF-1/BP3 Preserves Lung Growth and Prevents Pulmonary Hypertension in Experimental Bronchopulmonary Dysplasia. Am J Respir Crit Care Med. 2020 05 01; 201(9):1120-1134. PMID: 32101461.
      View in: PubMed
    7. Kim C, Seedorf GJ, Abman SH, Shepherd DP. Heterogeneous response of endothelial cells to insulin-like growth factor 1 treatment is explained by spatially clustered sub-populations. Biol Open. 2019 Nov 04; 8(11). PMID: 31649121.
      View in: PubMed
    8. Munsky B, Li G, Fox ZR, Shepherd DP, Neuert G. Distribution shapes govern the discovery of predictive models for gene regulation. Proc Natl Acad Sci U S A. 2018 07 17; 115(29):7533-7538. PMID: 29959206.
      View in: PubMed
    9. Gould EA, Busquet N, Shepherd D, Dietz RM, Herson PS, Simoes de Souza FM, Li A, George NM, Restrepo D, Macklin WB. Mild myelin disruption elicits early alteration in behavior and proliferation in the subventricular zone. Elife. 2018 02 13; 7. PMID: 29436368.
      View in: PubMed
    10. Ryan DP, Gould EA, Seedorf GJ, Masihzadeh O, Abman SH, Vijayaraghavan S, Macklin WB, Restrepo D, Shepherd DP. Automatic and adaptive heterogeneous refractive index compensation for light-sheet microscopy. Nat Commun. 2017 09 20; 8(1):612. PMID: 28931809.
      View in: PubMed
    11. Singh JN, Nowlin TM, Seedorf GJ, Abman SH, Shepherd DP. Quantifying three-dimensional rodent retina vascular development using optical tissue clearing and light-sheet microscopy. J Biomed Opt. 2017 07 01; 22(7):76011. PMID: 28717817.
      View in: PubMed
    12. Shepherd D. Life away from the coverslip: Comment on "Extracting physics of life at the molecular level: A review of single-molecule data analyses" by W. Colomb and S.K. Sarkar. Phys Life Rev. 2015 Jun; 13:144-5. PMID: 25936616.
      View in: PubMed
    13. Shepherd DP, Li N, Micheva-Viteva SN, Munsky B, Hong-Geller E, Werner JH. Counting small RNA in pathogenic bacteria. Anal Chem. 2013 May 21; 85(10):4938-43. PMID: 23577771.
      View in: PubMed
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