 Akshay Kumar Avvaru
| Title | Post-Doctoral Fellow |
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| Institution | University of Colorado Denver - Anschutz Medical Campus |
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| Department | SOM-BIOMED Informatics Gen Ops |
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 Bibliographic
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Sasani TA, Goldberg ME, Avvaru AK, Nicholas TJ, Neklason DW, Dolzhenko E, Mokveld T, Munson KM, Hoekzema K, Ayllon M, Kaufman EJ, Porubsky D, Kronenberg Z, de Sena Brandine G, Rowell WJ, Jorde LB, Mason CE, Eberle MA, Valdmanis PN, Eichler EE, Quinlan AR, Dashnow H. A family portrait of the genomic factors shaping tandem repeat mutagenesis. bioRxiv. 2026 May 12. PMID: 41959501.
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Hiatt L, Peterson EV, Happ HC, Major-Mincer J, Avvaru A, Goclowski CL, Garretson A, Sasani TA, Hotaling JM, Neklason DW, Uchida AM, Quinlan AR. Colibactin-associated mutations in the human colon appear to reflect anatomy and early exposure, not oncogenesis. medRxiv. 2026 Apr 15. PMID: 42064950.
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Aliyev E, Avvaru A, De Coster W, Arner GM, Nyaga DM, Gibson SB, Weisburd B, Gu B, Gonzaga-Jauregui C, Chaisson MJP, Miller DE, Ostrowski E, Dashnow H. A comprehensive assessment of tandem repeat genotyping methods for Nanopore long-read genomes. bioRxiv. 2026 Mar 03. PMID: 41867861.
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Dischler A, Avvaru A, Lopez-Ignacio S, Lau C, Breuss MW, Cerdeño VM, Dashnow H, Dias CM. Long-read sequencing reveals extensive FMR1 somatic mosaicism in Fragile-X associated tremor/ataxia syndrome in human brain. bioRxiv. 2025 Oct 09. PMID: 41278766.
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Hiatt L, Weisburd B, Dolzhenko E, Rubinetti V, Avvaru AK, VanNoy GE, Kurtas NE, Rehm HL, Quinlan AR, Dashnow H. STRchive: a dynamic resource detailing population-level and locus-specific insights at tandem repeat disease loci. Genome Med. 2025 03 26; 17(1):29. PMID: 40140942.
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Bihani A, Avvaru AK, Mishra RK. Biochemical Deconstruction and Reconstruction of Nuclear Matrix Reveals the Layers of Nuclear Organization. Mol Cell Proteomics. 2023 12; 22(12):100671. PMID: 37863319.
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Sureka R, Avvaru AK, Sowpati DT, Pathak RU, Mishra RK. Structural and developmental dynamics of Matrix associated regions in Drosophila melanogaster genome. BMC Genomics. 2022 Oct 25; 23(1):725. PMID: 36284304.
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Avvaru AK, Sharma D, Verma A, Mishra RK, Sowpati DT. MSDB: a comprehensive, annotated database of microsatellites. Nucleic Acids Res. 2020 01 08; 48(D1):D155-D159. PMID: 31599331.
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Srivastava S, Avvaru AK, Sowpati DT, Mishra RK. Patterns of microsatellite distribution across eukaryotic genomes. BMC Genomics. 2019 Feb 22; 20(1):153. PMID: 30795733.
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Avvaru AK, Sowpati DT, Mishra RK. PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences. Bioinformatics. 2018 03 15; 34(6):943-948. PMID: 29121165.
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Avvaru AK, Saxena S, Sowpati DT, Mishra RK. MSDB: A Comprehensive Database of Simple Sequence Repeats. Genome Biol Evol. 2017 06 01; 9(6):1797-1802. PMID: 28854643.
This graph shows the total number of publications by year, by first, middle/unknown, or last author.
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| Year | Publications |
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| 2017 | 1 | | 2018 | 1 | | 2019 | 1 | | 2020 | 1 | | 2022 | 1 | | 2023 | 1 | | 2025 | 2 | | 2026 | 3 |
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