Colorado PROFILES, The Colorado Clinical and Translational Sciences Institute (CCTSI)
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Last Name
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Harriet Dashnow

TitleAssistant Professor
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM-BIOMED Informatics Gen Ops

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Fazal S, Dashnow H, Dohrn MF, Raposo J, Hiatt L, Danzi MC, Xu IRL, Toro C, Adams DR, Usdin K, Hayward B, Kobren SN, Sunyaev SR, Spillmann RC, Shashi V, Rebelo A, Bademci G, Tekin M, Quinlan AR, Z?chner S. A genome-wide approach for the discovery of novel repeat expansion disorders in the Undiagnosed Diseases Network cohort. Genet Med. 2025 May 22; 101462. PMID: 40417743.
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    2. Porubsky D, Dashnow H, Sasani TA, Logsdon GA, Hallast P, Noyes MD, Kronenberg ZN, Mokveld T, Koundinya N, Nolan C, Steely CJ, Guarracino A, Dolzhenko E, Harvey WT, Rowell WJ, Grigorev K, Nicholas TJ, Goldberg ME, Oshima KK, Lin J, Ebert P, Watkins WS, Leung TY, Hanlon VCT, McGee S, Pedersen BS, Happ HC, Jeong H, Munson KM, Hoekzema K, Chan DD, Wang Y, Knuth J, Garcia GH, Fanslow C, Lambert C, Lee C, Smith JD, Levy S, Mason CE, Garrison E, Lansdorp PM, Neklason DW, Jorde LB, Quinlan AR, Eberle MA, Eichler EE. Human de novo mutation rates from a four-generation pedigree reference. Nature. 2025 Apr 23. PMID: 40269156.
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    3. Tanudisastro HA, Cuomo ASE, Weisburd B, Welland M, Spenceley E, Franklin M, Xue A, Bowen B, Wing K, Tang O, Gray M, Reis ALM, Margoliash J, Kurtas NE, Pullin JM, Lee AS, Brand H, Harper M, Bobowik K, Silk M, Marshall J, Bakiris V, Madala BS, Uren C, Bartie C, Senabouth A, Dashnow H, Fearnley L, Martin-Trujillo A, Dolzhenko E, Qiao Z, Grieve SM, Nguyen T, Ben-David E, Chen L, Farh KK, Talkowski M, Alexander SI, Siggs OM, Gruenschloss L, Nicholas HR, Piscionere J, Simons C, Wallace C, Gymrek M, Deveson IW, Hewitt AW, Figtree GA, de Lange KM, Powell JE, MacArthur DG. Polymorphic tandem repeats influence cell type-specific gene expression across the human immune landscape. bioRxiv. 2025 Apr 09. PMID: 40291654.
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    4. Hiatt L, Weisburd B, Dolzhenko E, Rubinetti V, Avvaru AK, VanNoy GE, Kurtas NE, Rehm HL, Quinlan AR, Dashnow H. STRchive: a dynamic resource detailing population-level and locus-specific insights at tandem repeat disease loci. Genome Med. 2025 Mar 26; 17(1):29. PMID: 40140942.
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    5. Doss RM, Lopez-Ignacio S, Dischler A, Hiatt L, Dashnow H, Breuss MW, Dias CM. Mosaicism in Short Tandem Repeat Disorders: A Clinical Perspective. Genes (Basel). 2025 Feb 13; 16(2). PMID: 40004546.
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    6. Gustafson JA, Gibson SB, Damaraju N, Zalusky MPG, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson ZB, Storz SHR, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE. High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation. Genome Res. 2024 Nov 20; 34(11):2061-2073. PMID: 39358015.
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    7. Porubsky D, Dashnow H, Sasani TA, Logsdon GA, Hallast P, Noyes MD, Kronenberg ZN, Mokveld T, Koundinya N, Nolan C, Steely CJ, Guarracino A, Dolzhenko E, Harvey WT, Rowell WJ, Grigorev K, Nicholas TJ, Oshima KK, Lin J, Ebert P, Watkins WS, Leung TY, Hanlon VCT, McGee S, Pedersen BS, Goldberg ME, Happ HC, Jeong H, Munson KM, Hoekzema K, Chan DD, Wang Y, Knuth J, Garcia GH, Fanslow C, Lambert C, Lee C, Smith JD, Levy S, Mason CE, Garrison E, Lansdorp PM, Neklason DW, Jorde LB, Quinlan AR, Eberle MA, Eichler EE. A familial, telomere-to-telomere reference for human de novo mutation and recombination from a four-generation pedigree. bioRxiv. 2024 Aug 05. PMID: 39149261.
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    8. Mokveld T, Dolzhenko E, Dashnow H, Nicholas TJ, Sasani T, van der Sanden B, Jadhav B, Pedersen B, Kronenberg Z, Tucci A, Sharp AJ, Quinlan AR, Gilissen C, Hoischen A, Eberle MA. TRGT-denovo: accurate detection of de novo tandem repeat mutations. bioRxiv. 2024 Jul 19. PMID: 39071386.
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    9. Hiatt L, Weisburd B, Dolzhenko E, VanNoy GE, Kurtas EN, Rehm HL, Quinlan A, Dashnow H. STRchive: a dynamic resource detailing population-level and locus-specific insights at tandem repeat disease loci. medRxiv. 2024 May 21. PMID: 38826469.
      View in: PubMed
    10. Gustafson JA, Gibson SB, Damaraju N, Zalusky MP, Hoekzema K, Twesigomwe D, Yang L, Snead AA, Richmond PA, De Coster W, Olson ND, Guarracino A, Li Q, Miller AL, Goffena J, Anderson Z, Storz SH, Ward SA, Sinha M, Gonzaga-Jauregui C, Clarke WE, Basile AO, Corvelo A, Reeves C, Helland A, Musunuri RL, Revsine M, Patterson KE, Paschal CR, Zakarian C, Goodwin S, Jensen TD, Robb E, McCombie WR, Sedlazeck FJ, Zook JM, Montgomery SB, Garrison E, Kolmogorov M, Schatz MC, McLaughlin RN, Dashnow H, Zody MC, Loose M, Jain M, Eichler EE, Miller DE. Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation. medRxiv. 2024 Mar 07. PMID: 38496498.
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    11. Tanudisastro HA, Deveson IW, Dashnow H, MacArthur DG. Sequencing and characterizing short tandem repeats in the human genome. Nat Rev Genet. 2024 Jul; 25(7):460-475. PMID: 38366034.
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    12. Dolzhenko E, English A, Dashnow H, De Sena Brandine G, Mokveld T, Rowell WJ, Karniski C, Kronenberg Z, Danzi MC, Cheung WA, Bi C, Farrow E, Wenger A, Chua KP, Mart?nez-Cerde?o V, Bartley TD, Jin P, Nelson DL, Zuchner S, Pastinen T, Quinlan AR, Sedlazeck FJ, Eberle MA. Characterization and visualization of tandem repeats at genome scale. Nat Biotechnol. 2024 Oct; 42(10):1606-1614. PMID: 38168995.
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    13. Dashnow H, Pedersen BS, Hiatt L, Brown J, Beecroft SJ, Ravenscroft G, LaCroix AJ, Lamont P, Roxburgh RH, Rodrigues MJ, Davis M, Mefford HC, Laing NG, Quinlan AR. STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci. Genome Biol. 2022 12 14; 23(1):257. PMID: 36517892.
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    14. Shere H, Weijer L, Dashnow H, Moreno LE, Foxworthy Scott S, Baker H. Chronic Lactation Insufficiency Is a Public Health Issue: Commentary on "We Need Patient-Centered Research in Breastfeeding Medicine" by Stuebe. Breastfeed Med 2021;16:349-350. Breastfeed Med. 2021 12; 16(12):933-934. PMID: 34403595.
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    15. Pedersen BS, Brown JM, Dashnow H, Wallace AD, Velinder M, Tristani-Firouzi M, Schiffman JD, Tvrdik T, Mao R, Best DH, Bayrak-Toydemir P, Quinlan AR. Effective variant filtering and expected candidate variant yield in studies of rare human disease. NPJ Genom Med. 2021 Jul 15; 6(1):60. PMID: 34267211.
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    16. Georgeson P, Syme A, Sloggett C, Chung J, Dashnow H, Milton M, Lonsdale A, Powell D, Seemann T, Pope B. Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software. Gigascience. 2019 09 01; 8(9). PMID: 31544213.
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    17. Dashnow H, Lek M, Phipson B, Halman A, Sadedin S, Lonsdale A, Davis M, Lamont P, Clayton JS, Laing NG, MacArthur DG, Oshlack A. STRetch: detecting and discovering pathogenic short tandem repeat expansions. Genome Biol. 2018 08 21; 19(1):121. PMID: 30129428.
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    18. Stark Z, Dashnow H, Lunke S, Tan TY, Yeung A, Sadedin S, Thorne N, Macciocca I, Gaff C, Oshlack A, White SM, James PA. A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data. Eur J Hum Genet. 2017 11; 25(11):1268-1272. PMID: 28832562.
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    19. Lonsdale A, Sietsma Penington J, Rice T, Walker M, Dashnow H. Ten Simple Rules for a Bioinformatics Journal Club. PLoS Comput Biol. 2016 Jan; 12(1):e1004526. PMID: 26820645.
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    20. Sadedin SP, Dashnow H, James PA, Bahlo M, Bauer DC, Lonie A, Lunke S, Macciocca I, Ross JP, Siemering KR, Stark Z, White SM, Taylor G, Gaff C, Oshlack A, Thorne NP. Cpipe: a shared variant detection pipeline designed for diagnostic settings. Genome Med. 2015; 7(1):68. PMID: 26217397.
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    21. Inouye M, Dashnow H, Raven LA, Schultz MB, Pope BJ, Tomita T, Zobel J, Holt KE. SRST2: Rapid genomic surveillance for public health and hospital microbiology labs. Genome Med. 2014; 6(11):90. PMID: 25422674.
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    22. Dashnow H, Lonsdale A, Bourne PE. Ten simple rules for writing a PLOS ten simple rules article. PLoS Comput Biol. 2014 Oct; 10(10):e1003858. PMID: 25340653.
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    23. Buck NE, Dashnow H, Pitt JJ, Wood LR, Peters HL. Development of transgenic mice containing an introduced stop codon on the human methylmalonyl-CoA mutase locus. PLoS One. 2012; 7(9):e44974. PMID: 23024777.
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