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Federico Martinez Seidel

TitlePost-Doctoral Fellow
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM-BioChem&Molecular Genetics
ORCID ORCID Icon0000-0002-1410-2492 Additional info

    Collapse Biography 
    Collapse education and training
    Universidad de Caldas, Manizales, ColombiaLicentiate Degree 09/2015Agronomic Engineering
    Wageningen University, Wageningen, The NetherlandsMaster’s Degree02/2018Plant Sciences
    The University of Melbourne, Melbourne, AustraliaPhD01/2023Molecular Physiology
    Potsdam Universität - Max Planck Institute for Molecular Plant Physiology, Potsdam, GermanyDr.rer.nat01/2023Molecular Plant Physiology

    Collapse Overview 

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    List All   |   Timeline
    1. Ting MKY, Gao Y, Barahimipour R, Ghandour R, Liu J, Martinez-Seidel F, Smirnova J, Gotsmann VL, Fischer A, Haydon MJ, Willmund F, Zoschke R. Optimization of ribosome profiling in plants including structural analysis of rRNA fragments. Plant Methods. 2024 Sep 16; 20(1):143. PMID: 39285473.
      View in: PubMed
    2. White LK, Dobson K, Del Pozo S, Bilodeaux JM, Andersen SE, Baldwin A, Barrington C, K?rtel N, Martinez-Seidel F, Strugar SM, Watt KEN, Mukherjee N, Hesselberth JR. Comparative analysis of 43 distinct RNA modifications by nanopore tRNA sequencing. bioRxiv. 2024 Jul 24. PMID: 39091754.
      View in: PubMed
    3. Gentry-Torfer D, Murillo E, Barrington CL, Nie S, Leeming MG, Suwanchaikasem P, Williamson NA, Roessner U, Boughton BA, Kopka J, Martinez-Seidel F. Streamlining Protein Fractional Synthesis Rates Using SP3 Beads and Stable Isotope Mass Spectrometry: A Case Study on the Plant Ribosome. Bio Protoc. 2024 May 05; 14(9):e4981. PMID: 38737506.
      View in: PubMed
    4. Rosa-T?llez S, Alc?ntara-Engu?danos A, Mart?nez-Seidel F, Casatejada-Anchel R, Saeheng S, Bailes CL, Erban A, Barbosa-Medeiros D, Alep?z P, Matus JT, Kopka J, Mu?oz-Bertomeu J, Krueger S, Roje S, Fernie AR, Ros R. The serine-glycine-one-carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development. Plant Cell. 2024 Jan 30; 36(2):404-426. PMID: 37804096.
      View in: PubMed
    5. Siodmak A, Martinez-Seidel F, Rayapuram N, Bazin J, Alhoraibi H, Gentry-Torfer D, Tabassum N, Sheikh AH, Kise JKG, Blilou I, Crespi M, Kopka J, Hirt H. Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic Acids Res. 2023 Nov 27; 51(21):11876-11892. PMID: 37823590.
      View in: PubMed
    6. Figueroa NE, Franz P, Luzarowski M, Martinez-Seidel F, Moreno JC, Childs D, Ziemblicka A, Sampathkumar A, Andersen TG, Tsiavaliaris G, Chodasiewicz M, Skirycz A. Protein interactome of 3',5'-cAMP reveals its role in regulating the actin cytoskeleton. Plant J. 2023 09; 115(5):1214-1230. PMID: 37219088.
      View in: PubMed
    7. Awada R, Lepelley M, Breton D, Charpagne A, Campa C, Berry V, Georget F, Breitler JC, L?ran S, Djerrab D, Martinez-Seidel F, Descombes P, Crouzillat D, Bertrand B, Etienne H. Global transcriptome profiling reveals differential regulatory, metabolic and hormonal networks during somatic embryogenesis in Coffea arabica. BMC Genomics. 2023 Jan 24; 24(1):41. PMID: 36694132.
      View in: PubMed
    8. Cheong BE, Yu D, Martinez-Seidel F, Ho WWH, Rupasinghe TWT, Dolferus R, Roessner U. The Effect of Cold Stress on the Root-Specific Lipidome of Two Wheat Varieties with Contrasting Cold Tolerance. Plants (Basel). 2022 May 20; 11(10). PMID: 35631789.
      View in: PubMed
    9. Martinez-Seidel F, Hsieh YC, Walther D, Kopka J, Pereira Firmino AA. [Formula: see text]: ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes. BMC Bioinformatics. 2021 Dec 20; 22(1):605. PMID: 34930116.
      View in: PubMed
    10. Martinez-Seidel F, Beine-Golovchuk O, Hsieh YC, Eshraky KE, Gorka M, Cheong BE, Jimenez-Posada EV, Walther D, Skirycz A, Roessner U, Kopka J, Pereira Firmino AA. Spatially Enriched Paralog Rearrangements Argue Functionally Diverse Ribosomes Arise during Cold Acclimation in Arabidopsis. Int J Mol Sci. 2021 Jun 07; 22(11). PMID: 34200446.
      View in: PubMed
    11. Schillaci M, Kehelpannala C, Martinez-Seidel F, Smith PMC, Arsova B, Watt M, Roessner U. The Metabolic Response of Brachypodium Roots to the Interaction with Beneficial Bacteria Is Affected by the Plant Nutritional Status. Metabolites. 2021 Jun 03; 11(6). PMID: 34205012.
      View in: PubMed
    12. Martinez-Seidel F, Suwanchaikasem P, Nie S, Leeming MG, Pereira Firmino AA, Williamson NA, Kopka J, Roessner U, Boughton BA. Membrane-Enriched Proteomics Link Ribosome Accumulation and Proteome Reprogramming With Cold Acclimation in Barley Root Meristems. Front Plant Sci. 2021; 12:656683. PMID: 33995454.
      View in: PubMed
    13. Cheong BE, Beine-Golovchuk O, Gorka M, Ho WWH, Martinez-Seidel F, Firmino AAP, Skirycz A, Roessner U, Kopka J. Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Sci Rep. 2021 01 28; 11(1):2410. PMID: 33510206.
      View in: PubMed
    14. Firmino AAP, Gorka M, Graf A, Skirycz A, Martinez-Seidel F, Zander K, Kopka J, Beine-Golovchuk O. Separation and Paired Proteome Profiling of Plant Chloroplast and Cytoplasmic Ribosomes. Plants (Basel). 2020 Jul 14; 9(7). PMID: 32674508.
      View in: PubMed
    15. Martinez-Seidel F, Beine-Golovchuk O, Hsieh YC, Kopka J. Systematic Review of Plant Ribosome Heterogeneity and Specialization. Front Plant Sci. 2020; 11:948. PMID: 32670337.
      View in: PubMed
    16. Erban A, Martinez-Seidel F, Rajarathinam Y, Dethloff F, Orf I, Fehrle I, Alpers J, Beine-Golovchuk O, Kopka J. Multiplexed Profiling and Data Processing Methods to Identify Temperature-Regulated Primary Metabolites Using Gas Chromatography Coupled to Mass Spectrometry. Methods Mol Biol. 2020; 2156:203-239. PMID: 32607984.
      View in: PubMed
    17. Awada R, Campa C, Gibault E, D?champ E, Georget F, Lepelley M, Abdallah C, Erban A, Martinez-Seidel F, Kopka J, Legendre L, L?ran S, Con?j?ro G, Verdeil JL, Crouzillat D, Breton D, Bertrand B, Etienne H. Unravelling the Metabolic and Hormonal Machinery During Key Steps of Somatic Embryogenesis: A Case Study in Coffee. Int J Mol Sci. 2019 Sep 20; 20(19). PMID: 31547069.
      View in: PubMed
    18. Erban A, Fehrle I, Martinez-Seidel F, Brigante F, M?s AL, Baroni V, Wunderlin D, Kopka J. Discovery of food identity markers by metabolomics and machine learning technology. Sci Rep. 2019 07 04; 9(1):9697. PMID: 31273246.
      View in: PubMed
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