 Metagenomics
"Metagenomics" is a descriptor in the National Library of Medicine's controlled vocabulary thesaurus,
MeSH (Medical Subject Headings). Descriptors are arranged in a hierarchical structure,
which enables searching at various levels of specificity.
The genomic analysis of assemblages of organisms.
| Descriptor ID |
D056186
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| MeSH Number(s) |
H01.158.273.343.350.261
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| Concept/Terms |
Metagenomics- Metagenomics
- Metagenomic
- Environmental Genomics
- Environmental Genomic
- Genomic, Environmental
- Genomics, Environmental
- Population Genomics
- Genomic, Population
- Genomics, Population
- Population Genomic
- Community Genomics
- Community Genomic
- Genomic, Community
- Genomics, Community
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Below are MeSH descriptors whose meaning is more general than "Metagenomics".
Below are MeSH descriptors whose meaning is more specific than "Metagenomics".
This graph shows the total number of publications written about "Metagenomics" by people in this website by year, and whether "Metagenomics" was a major or minor topic of these publications.
To see the data from this visualization as text, click here.
| Year | Major Topic | Minor Topic | Total |
|---|
| 2010 | 2 | 1 | 3 | | 2011 | 5 | 2 | 7 | | 2012 | 3 | 1 | 4 | | 2013 | 2 | 1 | 3 | | 2014 | 4 | 3 | 7 | | 2015 | 4 | 3 | 7 | | 2016 | 0 | 6 | 6 | | 2017 | 6 | 4 | 10 | | 2018 | 0 | 3 | 3 | | 2019 | 11 | 10 | 21 | | 2020 | 2 | 5 | 7 | | 2021 | 5 | 10 | 15 | | 2022 | 0 | 5 | 5 | | 2023 | 1 | 7 | 8 | | 2024 | 5 | 3 | 8 | | 2025 | 6 | 2 | 8 |
To return to the timeline, click here.
Below are the most recent publications written about "Metagenomics" by people in Profiles.
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Russell JN, Kos D, Yacoub E, Sies AN, Warr B, Jelinski M, Ruzzini A, Cameron ADS. Enhanced metagenomic surveillance for bovine respiratory disease pathogens and antimicrobial resistance by hybridization capture sequencing. Appl Environ Microbiol. 2025 Oct 22; 91(10):e0097725.
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Lei H, Du S, Tong X, Chan WL, Leung MHY, Bøifot KO, Bezdan D, Butler DJ, Danko DC, Green DC, Hernandez MT, Kelly FJ, Lucaci AG, Meydan C, Nieto-Caballero M, Ryon K, Tierney B, Udekwu KI, Young BG, Mason CE, Dybwad M, Lee PKH. Global biogeography of airborne viruses in public transit systems and their host interactions. Microbiome. 2025 Aug 29; 13(1):193.
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Caffrey EB, Olm MR, Kothe CI, Wastyk HC, Evans JD, Sonnenburg JL. MiFoDB, a workflow for microbial food metagenomic characterization, enables high-resolution analysis of fermented food microbial dynamics. mSystems. 2025 Sep 23; 10(9):e0014125.
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Shantha JG, Moussa K, Laovirojjanakul W, Yeh S, Tsui E, Chen JL, Vitale AT, Shakoor A, Larochelle M, Niemeyer K, Mentreddy A, Livnat I, Safo M, Ao W, Choo C, Yan D, Zhong L, Chen C, Da Silva K, Reddy AK, Lee J, Sura A, Crowell EL, Qian Y, Sharon Y, Hinterwirth A, Porco T, Arnold BF, Gonzales J, Acharya NR, Lietman TM, Doan T. The Effect of Metagenomic Sequencing on Patient Clinical Outcomes for Intraocular Infections: A Multicenter Randomized Controlled Trial. Am J Ophthalmol. 2025 Nov; 279:100-109.
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Fierer N, Leung PM, Lappan R, Eisenhofer R, Ricci F, Holland SI, Dragone N, Blackall LL, Dong X, Dorador C, Ferrari BC, Goordial J, Holmes SP, Inagaki F, Korem T, Li SS, Makhalanyane TP, Metcalf JL, Nagarajan N, Orsi WD, Shanahan ER, Walker AW, Weyrich LS, Gilbert JA, Willis AD, Callahan BJ, Shade A, Parkhill J, Banfield JF, Greening C. Guidelines for preventing and reporting contamination in low-biomass microbiome studies. Nat Microbiol. 2025 Jul; 10(7):1570-1580.
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Mziray SR, Githinji G, de Laurent ZR, Mbelele PM, Mohammed KS, Wadugu BD, Grundy BS, Heysell SK, Mpagama SG, Chilongola JO. Deploying Metagenomics to Characterize Microbial Pathogens During Outbreak of Acute Febrile Illness Among Children in Tanzania. Pathogens. 2025 Jun 19; 14(6).
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Lu D, Kalantar KL, Glascock AL, Chu VT, Guerrero ES, Bernick N, Butcher X, Ewing K, Fahsbender E, Holmes O, Hoops E, Jones AE, Lim R, McCanny S, Reynoso L, Rosario K, Tang J, Valenzuela O, Mourani PM, Pickering AJ, Raphenya AR, Alcock BP, McArthur AG, Langelier CR. Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform. Genome Med. 2025 May 06; 17(1):46.
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Olm MR, Spencer SP, Takeuchi T, Silva EL, Sonnenburg JL. Metagenomic immunoglobulin sequencing reveals IgA coating of microbial strains in the healthy human gut. Nat Microbiol. 2025 Jan; 10(1):112-125.
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Chang WS, Harvey E, Mahar JE, Firth C, Shi M, Simon-Loriere E, Geoghegan JL, Wille M. Improving the reporting of metagenomic virome-scale data. Commun Biol. 2024 Dec 20; 7(1):1687.
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Kim M, Parrish RC, Tisza MJ, Shah VS, Tran T, Ross M, Cormier J, Baig A, Huang CY, Brenner L, Neuringer I, Whiteson K, Harris JK, Willis AD, Lai PS. Host DNA depletion on frozen human respiratory samples enables successful metagenomic sequencing for microbiome studies. Commun Biol. 2024 Nov 28; 7(1):1590.
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