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Fuyong Xing

TitleAssociate Professor
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentCSPH-Bio Info General Ops

    Collapse Research 
    Collapse research activities and funding
    R21CA274487     (XING, FUYONG)Sep 19, 2023 - Aug 31, 2025
    NIH
    Geles: A Novel Imaging Informatics System for Generalizable Lesion Identification in Neuroendocrine Tumors
    Role: Principal Investigator
    R21CA237493     (XING, FUYONG)Apr 2, 2019 - Mar 31, 2021
    NIH
    Development and Dissemination of KiNet: A Novel Imaging Informatics Tool for Gastrointestinal and Pancreatic Neuroendocrine Tumors
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Yang X, Chin BB, Silosky M, Wehrend J, Litwiller DV, Ghosh D, Xing F. Learning Without Real Data Annotations to Detect Hepatic Lesions in PET Images. IEEE Trans Biomed Eng. 2024 Feb; 71(2):679-688. PMID: 37708016.
      View in: PubMed
    2. Xing F, Silosky M, Ghosh D, Chin BB. Location-Aware Encoding for Lesion Detection in 68Ga-DOTATATE Positron Emission Tomography Images. IEEE Trans Biomed Eng. 2024 Jan; 71(1):247-257. PMID: 37471190.
      View in: PubMed
    3. Liu J, Xing F, Shaikh A, French B, Linguraru MG, Porras AR. Joint Cranial Bone Labeling and Landmark Detection in Pediatric CT Images Using Context Encoding. IEEE Trans Med Imaging. 2023 10; 42(10):3117-3126. PMID: 37216247.
      View in: PubMed
    4. Xing F, Yang X, Cornish TC, Ghosh D. Learning with limited target data to detect cells in cross-modality images. Med Image Anal. 2023 12; 90:102969. PMID: 37802010.
      View in: PubMed
    5. Ahmadian M, Rickert C, Minic A, Wrobel J, Bitler BG, Xing F, Angelo M, Hsieh EWY, Ghosh D, Jordan KR. A platform-independent framework for phenotyping of multiplex tissue imaging data. PLoS Comput Biol. 2023 09; 19(9):e1011432. PMID: 37733781.
      View in: PubMed
    6. Yang X, Wang W, Gitomer B, Cadnapaphornchai MA, Xing F, Chonchol M. Imaging Biomarkers in Young Patients With ADPKD. Kidney Int Rep. 2023 Oct; 8(10):2153-2155. PMID: 37850021.
      View in: PubMed
    7. Zhuang Y, Xing F, Ghosh D, Hobbs BD, Hersh CP, Banaei-Kashani F, Bowler RP, Kechris K. Deep learning on graphs for multi-omics classification of COPD. PLoS One. 2023; 18(4):e0284563. PMID: 37083575.
      View in: PubMed
    8. Silosky M, Xing F, Wehrend J, Litwiller DV, Metzler SD, Chin BB. Modeling contrast-to-noise ratio from list mode reconstructions of 68Ga DOTATATE PET/CT: predicting detectability of hepatic metastases in shorter acquisition PET reconstructions. Am J Nucl Med Mol Imaging. 2023; 13(1):33-42. PMID: 36923602.
      View in: PubMed
    9. Xing F, Cornish TC. Low-Resource Adversarial Domain Adaptation for Cross-Modality Nucleus Detection. Med Image Comput Comput Assist Interv. 2022 Sep; 13437:639-649. PMID: 36383499.
      View in: PubMed
    10. Chen P, El Hussein S, Xing F, Aminu M, Kannapiran A, Hazle JD, Medeiros LJ, Wistuba II, Jaffray D, Khoury JD, Wu J. Chronic Lymphocytic Leukemia Progression Diagnosis with Intrinsic Cellular Patterns via Unsupervised Clustering. Cancers (Basel). 2022 May 13; 14(10). PMID: 35626003.
      View in: PubMed
    11. Ryan SM, Carlson NE, Butler H, Fingerlin TE, Maier LA, Xing F. Cluster activation mapping with application to computed tomography scans of the lung. J Med Imaging (Bellingham). 2022 Mar; 9(2):026001. PMID: 35274026.
      View in: PubMed
    12. Zhuang Y, Xing F, Ghosh D, Banaei-Kashani F, Bowler RP, Kechris K. An Augmented High-Dimensional Graphical Lasso Method to Incorporate Prior Biological Knowledge for Global Network Learning. Front Genet. 2021; 12:760299. PMID: 35154240.
      View in: PubMed
    13. Wehrend J, Silosky M, Xing F, Chin BB. Automated liver lesion detection in 68Ga DOTATATE PET/CT using a deep fully convolutional neural network. EJNMMI Res. 2021 Oct 02; 11(1):98. PMID: 34601660.
      View in: PubMed
    14. Xing F, Cornish TC, Bennett TD, Ghosh D. Bidirectional Mapping-Based Domain Adaptation for Nucleus Detection in Cross-Modality Microscopy Images. IEEE Trans Med Imaging. 2021 10; 40(10):2880-2896. PMID: 33284750.
      View in: PubMed
    15. Shi X, Xing F, Xu K, Chen P, Liang Y, Lu Z, Guo Z. Loss-Based Attention for Interpreting Image-Level Prediction of Convolutional Neural Networks. IEEE Trans Image Process. 2021; 30:1662-1675. PMID: 33382655.
      View in: PubMed
    16. Shi X, Xing F, Zhang Z, Sapkota M, Guo Z, Yang L. A Scalable Optimization Mechanism for Pairwise Based Discrete Hashing. IEEE Trans Image Process. 2021; 30:1130-1142. PMID: 33270563.
      View in: PubMed
    17. Zhang X, Cornish TC, Yang L, Bennett TD, Ghosh D, Xing F. Generative Adversarial Domain Adaptation for Nucleus Quantification in Images of Tissue Immunohistochemically Stained for Ki-67. JCO Clin Cancer Inform. 2020 07; 4:666-679. PMID: 32730116.
      View in: PubMed
    18. Warsavage T, Xing F, Bar?n AE, Feser WJ, Hirsch E, Miller YE, Malkoski S, Wolf HJ, Wilson DO, Ghosh D. Quantifying the incremental value of deep learning: Application to lung nodule detection. PLoS One. 2020; 15(4):e0231468. PMID: 32287288.
      View in: PubMed
    19. Tiwari P, Colborn KL, Smith DE, Xing F, Ghosh D, Rosenberg MA. Assessment of a Machine Learning Model Applied to Harmonized Electronic Health Record Data for the Prediction of Incident Atrial Fibrillation. JAMA Netw Open. 2020 01 03; 3(1):e1919396. PMID: 31951272.
      View in: PubMed
    20. Shi X, Su H, Xing F, Liang Y, Qu G, Yang L. Graph temporal ensembling based semi-supervised convolutional neural network with noisy labels for histopathology image analysis. Med Image Anal. 2020 02; 60:101624. PMID: 31841948.
      View in: PubMed
    21. Xing F, Xie Y, Shi X, Chen P, Zhang Z, Yang L. Correction to: Towards pixel-to-pixel deep nucleus detection in microscopy images. BMC Bioinformatics. 2019 Oct 22; 20(1):509. PMID: 31640559.
      View in: PubMed
    22. Xing F, Bennett T, Ghosh D. Adversarial Domain Adaptation and Pseudo-Labeling for Cross-Modality Microscopy Image Quantification. Med Image Comput Comput Assist Interv. 2019 Oct; 11764:740-749. PMID: 31825019.
      View in: PubMed
    23. Xing F, Xie Y, Shi X, Chen P, Zhang Z, Yang L. Towards pixel-to-pixel deep nucleus detection in microscopy images. BMC Bioinformatics. 2019 Sep 14; 20(1):472. PMID: 31521104.
      View in: PubMed
    24. Jensen AM, Tregellas JR, Sutton B, Xing F, Ghosh D. Kernel machine tests of association between brain networks and phenotypes. PLoS One. 2019; 14(3):e0199340. PMID: 30897094.
      View in: PubMed
    25. Xing F, Cornish TC, Bennett T, Ghosh D, Yang L. Pixel-to-Pixel Learning With Weak Supervision for Single-Stage Nucleus Recognition in Ki67 Images. IEEE Trans Biomed Eng. 2019 11; 66(11):3088-3097. PMID: 30802845.
      View in: PubMed
    26. Sapkota M, Shi X, Xing F, Yang L. Deep Convolutional Hashing for Low-Dimensional Binary Embedding of Histopathological Images. IEEE J Biomed Health Inform. 2019 03; 23(2):805-816. PMID: 29993648.
      View in: PubMed
    27. Shi X, Xing F, Xu K, Xie Y, Su H, Yang L. Supervised graph hashing for histopathology image retrieval and classification. Med Image Anal. 2017 Dec; 42:117-128. PMID: 28783503.
      View in: PubMed
    28. Xie Y, Xing F, Shi X, Kong X, Su H, Yang L. Efficient and robust cell detection: A structured regression approach. Med Image Anal. 2018 02; 44:245-254. PMID: 28797548.
      View in: PubMed
    29. Sapkota M, Liu F, Xie Y, Su H, Xing F, Yang L. AIIMDs: An Integrated Framework of Automatic Idiopathic Inflammatory Myopathy Diagnosis for Muscle. IEEE J Biomed Health Inform. 2018 05; 22(3):942-954. PMID: 28422672.
      View in: PubMed
    30. Zhang Z, Xing F, Shi X, Yang L. SemiContour: A Semi-supervised Learning Approach for Contour Detection. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2016 Jun; 2016:251-259. PMID: 28496297.
      View in: PubMed
    31. Cai J, Lu L, Zhang Z, Xing F, Yang L, Yin Q. Pancreas Segmentation in MRI using Graph-Based Decision Fusion on Convolutional Neural Networks. Med Image Comput Comput Assist Interv. 2016 Oct; 9901:442-450. PMID: 28083570.
      View in: PubMed
    32. Xing F, Shi X, Zhang Z, Cai J, Xie Y, Yang L. Transfer Shape Modeling Towards High-throughput Microscopy Image Segmentation. Med Image Comput Comput Assist Interv. 2016 Oct; 9902:183-190. PMID: 27924318.
      View in: PubMed
    33. Xing F, Yang L. Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review. IEEE Rev Biomed Eng. 2016; 9:234-63. PMID: 26742143.
      View in: PubMed
    34. Su H, Xing F, Kong X, Xie Y, Zhang S, Yang L. Robust Cell Detection and Segmentation in Histopathological Images Using Sparse Reconstruction and Stacked Denoising Autoencoders. Med Image Comput Comput Assist Interv. 2015 Oct; 9351:383-390. PMID: 27796013.
      View in: PubMed
    35. Xie Y, Kong X, Xing F, Liu F, Su H, Yang L. Deep Voting: A Robust Approach Toward Nucleus Localization in Microscopy Images. Med Image Comput Comput Assist Interv. 2015 Oct; 9351:374-382. PMID: 28083567.
      View in: PubMed
    36. Xie Y, Xing F, Kong X, Su H, Yang L. Beyond Classification: Structured Regression for Robust Cell Detection Using Convolutional Neural Network. Med Image Comput Comput Assist Interv. 2015 Oct; 9351:358-365. PMID: 28090601.
      View in: PubMed
    37. Zhang X, Xing F, Su H, Yang L, Zhang S. High-throughput histopathological image analysis via robust cell segmentation and hashing. Med Image Anal. 2015 Dec; 26(1):306-15. PMID: 26599156.
      View in: PubMed
    38. Xing F, Xie Y, Yang L. An Automatic Learning-Based Framework for Robust Nucleus Segmentation. IEEE Trans Med Imaging. 2016 Feb; 35(2):550-66. PMID: 26415167.
      View in: PubMed
    39. Sapkota M, Xing F, Su H, Yang L. AUTOMATIC MUSCLE PERIMYSIUM ANNOTATION USING DEEP CONVOLUTIONAL NEURAL NETWORK. Proc IEEE Int Symp Biomed Imaging. 2015 Apr; 2015:205-208. PMID: 28435514.
      View in: PubMed
    40. Wang H, Xing F, Su H, Stromberg A, Yang L. Novel image markers for non-small cell lung cancer classification and survival prediction. BMC Bioinformatics. 2014 Sep 19; 15:310. PMID: 25240495.
      View in: PubMed
    41. Qi X, Wang D, Rodero I, Diaz-Montes J, Gensure RH, Xing F, Zhong H, Goodell L, Parashar M, Foran DJ, Yang L. Content-based histopathology image retrieval using CometCloud. BMC Bioinformatics. 2014 Aug 26; 15:287. PMID: 25155691.
      View in: PubMed
    42. Yang L, Qi X, Xing F, Kurc T, Saltz J, Foran DJ. Parallel content-based sub-image retrieval using hierarchical searching. Bioinformatics. 2014 Apr 01; 30(7):996-1002. PMID: 24215030.
      View in: PubMed
    43. Xing F, Yang L. Robust selection-based sparse shape model for lung cancer image segmentation. Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):404-12. PMID: 24505787.
      View in: PubMed
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