Colorado PROFILES, The Colorado Clinical and Translational Sciences Institute (CCTSI)
Keywords
Last Name
Institution

Contact Us
If you have any questions or feedback please contact us.

Debashis Ghosh

TitleProfessor
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentCSPH-Bio Info General Ops
Phone303/724-4365
    Other Positions
    TitleChair
    InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
    DepartmentCSPH-Bio Info General Ops


    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
    List All   |   Timeline
    1. Russell P, Fountain K, Wolverton D, Ghosh D. TCIApathfinder: an R client for The Cancer Imaging Archive REST API. Cancer Res. 2018 Jun 05. PMID: 29871933.
      View in: PubMed
    2. Vartuli RL, Zhou H, Zhang L, Powers RK, Klarquist J, Rudra P, Vincent MY, Ghosh D, Costello JC, Kedl RM, Slansky JE, Zhao R, Ford HL. Eya3 promotes breast tumor-associated immune suppression via threonine phosphatase-mediated PD-L1 upregulation. J Clin Invest. 2018 May 14. PMID: 29757193.
      View in: PubMed
    3. Rudra P, Broadaway KA, Ware EB, Jhun MA, Bielak LF, Zhao W, Smith JA, Peyser PA, Kardia SLR, Epstein MP, Ghosh D. Testing cross-phenotype effects of rare variants in longitudinal studies of complex traits. Genet Epidemiol. 2018 Mar 30. PMID: 29601641.
      View in: PubMed
    4. Smith DE, Golden AP, Stange AW, Barker E, Mroz M, Barón AE, Ghosh D, Maier L, Cragle D, Newman LS. Clinical and laboratory factors contributing to uninterpretable beryllium lymphocyte proliferation tests (BeLPT). Am J Ind Med. 2018 Mar 24. PMID: 29574954.
      View in: PubMed
    5. Zhang L, Zhou H, Li X, Vartuli RL, Rowse M, Xing Y, Rudra P, Ghosh D, Zhao R, Ford HL. Eya3 partners with PP2A to induce c-Myc stabilization and tumor progression. Nat Commun. 2018 03 13; 9(1):1047. PMID: 29535359.
      View in: PubMed
    6. Cho Y, Hu C, Ghosh D. Covariate adjustment using propensity scores for dependent censoring problems in the accelerated failure time model. Stat Med. 2018 Feb 10; 37(3):390-404. PMID: 29023972.
      View in: PubMed
    7. Amini A, Jones BL, Stumpf P, Leong S, Lieu CH, Weekes C, Davis SL, Messersmith WA, Purcell WT, Ghosh D, Schefter T, Goodman KA. Patterns of Care for Locally Advanced Pancreatic Adenocarcinoma Using the National Cancer Database. Pancreas. 2017 Aug; 46(7):904-912. PMID: 28697131.
      View in: PubMed
    8. Lutz SM, Thwing A, Schmiege S, Kroehl M, Baker CD, Starling AP, Hokanson JE, Ghosh D. Examining the role of unmeasured confounding in mediation analysis with genetic and genomic applications. BMC Bioinformatics. 2017 Jul 19; 18(1):344. PMID: 28724417.
      View in: PubMed
    9. Duex JE, Owens C, Chauca-Diaz A, Dancik GM, Vanderlinden LA, Ghosh D, Leivo MZ, Hansel DE, Theodorescu D. Nuclear CD24 Drives Tumor Growth and Is Predictive of Poor Patient Prognosis. Cancer Res. 2017 09 15; 77(18):4858-4867. PMID: 28674079.
      View in: PubMed
    10. Stokes WA, Amini A, Jones BL, McDermott JD, Raben D, Ghosh D, Goddard JA, Bowles DW, Karam SD. Survival impact of induction chemotherapy in advanced head and neck cancer: A National Cancer Database analysis. Head Neck. 2017 Jun; 39(6):1113-1121. PMID: 28301079.
      View in: PubMed
    11. Vora A, Naik A, Lokhandwala Y, Chopra A, Varma J, Wander GS, Jaswal A, Srikanthan V, Singh B, Kahali D, Gupta A, Mantri RR, Mishra A, Pandurangi U, Ghosh D, Makkar JS, Sahu S, Radhakrishnan R. Profiling cardiac arrhythmia and heart failure patients in India: The Pan-arrhythmia and Heart Failure Observational Study. Indian Heart J. 2017 Mar - Apr; 69(2):226-239. PMID: 28460772.
      View in: PubMed
    12. Amini A, Waxweiler TV, Brower JV, Jones BL, McDermott JD, Raben D, Ghosh D, Bowles DW, Karam SD. Association of Adjuvant Chemoradiotherapy vs Radiotherapy Alone With Survival in Patients With Resected Major Salivary Gland Carcinoma: Data From the National Cancer Data Base. JAMA Otolaryngol Head Neck Surg. 2016 Nov 01; 142(11):1100-1110. PMID: 27541166.
      View in: PubMed
    13. Amini A, Jones BL, Ghosh D, Schefter TE, Goodman KA. Impact of facility volume on outcomes in patients with squamous cell carcinoma of the anal canal: Analysis of the National Cancer Data Base. Cancer. 2017 01 01; 123(2):228-236. PMID: 27571233.
      View in: PubMed
    14. Ghosh D. A modified risk set approach to biomarker evaluation studies. Stat Biosci. 2016 Oct; 8(2):395-406. PMID: 28989545.
      View in: PubMed
    15. Traynor AJ, Aragon M, Ghosh D, Choi RS, Dingmann C, Vu Tran Z, Bucklin BA. Obstetric Anesthesia Workforce Survey: A 30-Year Update. Anesth Analg. 2016 06; 122(6):1939-46. PMID: 27088993.
      View in: PubMed
    16. Amini A, Jones BL, McDermott JD, Serracino HS, Jimeno A, Raben D, Ghosh D, Bowles DW, Karam SD. Survival outcomes with concurrent chemoradiation for elderly patients with locally advanced head and neck cancer according to the National Cancer Data Base. Cancer. 2016 05 15; 122(10):1533-43. PMID: 26969811.
      View in: PubMed
    17. Broadaway KA, Cutler DJ, Duncan R, Moore JL, Ware EB, Jhun MA, Bielak LF, Zhao W, Smith JA, Peyser PA, Kardia SLR, Ghosh D, Epstein MP. A Statistical Approach for Testing Cross-Phenotype Effects of Rare Variants. Am J Hum Genet. 2016 Mar 03; 98(3):525-540. PMID: 26942286; PMCID: PMC4800053.
    18. Zhu Y, Ghosh D, Coffman DL, Savage JS. Estimating controlled direct effects of restrictivefeeding practices in the 'Early dieting in girls' study. J R Stat Soc Ser C Appl Stat. 2016 Jan; 65(1):115-130. PMID: 27182090.
      View in: PubMed
    19. Hua WY, Ghosh D. Equivalence of kernel machine regression and kernel distance covariance for multidimensional phenotype association studies. Biometrics. 2015 Sep; 71(3):812-20. PMID: 25939365.
      View in: PubMed
    20. Cho Y, Ghosh D. Weighted estimation of the accelerated failure time model in the presence of dependent censoring. PLoS One. 2015; 10(4):e0124381. PMID: 25909753; PMCID: PMC4409295.
    21. Zhan X, Patterson AD, Ghosh D. Kernel approaches for differential expression analysis of mass spectrometry-based metabolomics data. BMC Bioinformatics. 2015 Mar 11; 16:77. PMID: 25887233; PMCID: PMC4359587.
    22. Ghosh D, Zhu Y, Coffman DL. Penalized regression procedures for variable selection in the potential outcomes framework. Stat Med. 2015 May 10; 34(10):1645-58. PMID: 25628185; PMCID: PMC4390482.
    23. Almli LM, Duncan R, Feng H, Ghosh D, Binder EB, Bradley B, Ressler KJ, Conneely KN, Epstein MP. Correcting systematic inflation in genetic association tests that consider interaction effects: application to a genome-wide association study of posttraumatic stress disorder. JAMA Psychiatry. 2014 Dec 01; 71(12):1392-9. PMID: 25354142; PMCID: PMC4293022.
    24. Ghosh D, Li S. Unsupervised outlier profile analysis. Cancer Inform. 2014; 13(Suppl 4):25-33. PMID: 25452686; PMCID: PMC4218656.
    25. Zhu Y, Coffman DL, Ghosh D. A Boosting Algorithm for Estimating Generalized Propensity Scores with Continuous Treatments. J Causal Inference. 2015 Mar 01; 3(1):25-40. PMID: 26877909.
      View in: PubMed
    26. Li Y, Ghosh D. Meta-analysis based on weighted ordered P-values for genomic data with heterogeneity. BMC Bioinformatics. 2014 Jun 28; 15:226. PMID: 24972803; PMCID: PMC4089554.
    27. Zhan X, Epstein MP, Ghosh D. An Adaptive Genetic Association Test Using Double Kernel Machines. Stat Biosci. 2015 Oct 01; 7(2):262-281. PMID: 26640602.
      View in: PubMed
    28. Li Y, Ghosh D. A two-step hierarchical hypothesis set testing framework, with applications to gene expression data on ordered categories. BMC Bioinformatics. 2014 Apr 14; 15:108. PMID: 24731138; PMCID: PMC4000433.
    29. Ghosh D. Genomic outlier detection in high-throughput data analysis. Methods Mol Biol. 2013; 972:141-53. PMID: 23385536.
      View in: PubMed
    30. Ghosh D. Incorporating the empirical null hypothesis into the Benjamini-Hochberg procedure. Stat Appl Genet Mol Biol. 2012 Jul 26; 11(4). PMID: 22850065.
      View in: PubMed
    31. Chen W, Ghosh D, Raghunathan TE, Norkin M, Sargent DJ, Bepler G. On Bayesian methods of exploring qualitative interactions for targeted treatment. Stat Med. 2012 Dec 10; 31(28):3693-707. PMID: 22733620; PMCID: PMC3528020.
    32. Poisson LM, Taylor JM, Ghosh D. Integrative set enrichment testing for multiple omics platforms. BMC Bioinformatics. 2011 Nov 25; 12:459. PMID: 22118224; PMCID: PMC3329720.
    33. Ghosh D, Elliott MR, Taylor JM. Links between analysis of surrogate endpoints and endogeneity. Stat Med. 2010 Dec 10; 29(28):2869-79. PMID: 20803482; PMCID: PMC2997195.
    34. Ghosh D. Discrete nonparametric algorithms for outlier detection with genomic data. J Biopharm Stat. 2010 Mar; 20(2):193-208. PMID: 20309754; PMCID: PMC2845329.
    35. Ghosh D. Semiparametric analysis of recurrent events: artificial censoring, truncation, pairwise estimation and inference. Lifetime Data Anal. 2010 Oct; 16(4):509-24. PMID: 20063182; PMCID: PMC2939236.
    36. Chen W, Ghosh D, Raghunathan TE, Sargent DJ. Bayesian variable selection with joint modeling of categorical and survival outcomes: an application to individualizing chemotherapy treatment in advanced colorectal cancer. Biometrics. 2009 Dec; 65(4):1030-40. PMID: 19210736; PMCID: PMC2870722.
    37. Ghosh D. On assessing surrogacy in a single trial setting using a semicompeting risks paradigm. Biometrics. 2009 Jun; 65(2):521-9. PMID: 18759839; PMCID: PMC2752047.
    38. McEwen LN, Kim C, Haan MN, Ghosh D, Lantz PM, Thompson TJ, Herman WH. Are health-related quality-of-life and self-rated health associated with mortality? Insights from Translating Research Into Action for Diabetes (TRIAD). Prim Care Diabetes. 2009 Feb; 3(1):37-42. PMID: 19269911; PMCID: PMC4138696.
    39. Liu D, Ghosh D, Lin X. Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models. BMC Bioinformatics. 2008 Jun 24; 9:292. PMID: 18577223; PMCID: PMC2483287.
    40. Ghosh D, Chinnaiyan AM. Genomic outlier profile analysis: mixture models, null hypotheses, and nonparametric estimation. Biostatistics. 2009 Jan; 10(1):60-9. PMID: 18539648; PMCID: PMC2605210.
    41. Chen W, Ghosh D, Raghunathan TE, Sargent DJ. A false-discovery-rate-based loss framework for selection of interactions. Stat Med. 2008 May 20; 27(11):2004-21. PMID: 17979139.
      View in: PubMed
    42. Shen R, Ghosh D, Taylor JM. Modeling intra-tumor protein expression heterogeneity in tissue microarray experiments. Stat Med. 2008 May 20; 27(11):1944-59. PMID: 18300332; PMCID: PMC2753194.
    43. Yuan Z, Ghosh D. Combining multiple biomarker models in logistic regression. Biometrics. 2008 Jun; 64(2):431-9. PMID: 18325068.
      View in: PubMed
    44. Gu W, Choi H, Ghosh D. Global associations between copy number and transcript mRNA microarray data: an empirical study. Cancer Inform. 2008; 6:17-23. PMID: 19259399; PMCID: PMC2623285.
    45. Kwee LC, Liu D, Lin X, Ghosh D, Epstein MP. A powerful and flexible multilocus association test for quantitative traits. Am J Hum Genet. 2008 Feb; 82(2):386-97. PMID: 18252219; PMCID: PMC2664991.
    46. Ghosh D. On the Plackett distribution with bivariate censored data. Int J Biostat. 2008; 4(1):Article 7. PMID: 22462114.
      View in: PubMed
    47. Liu D, Lin X, Ghosh D. Semiparametric regression of multidimensional genetic pathway data: least-squares kernel machines and linear mixed models. Biometrics. 2007 Dec; 63(4):1079-88. PMID: 18078480; PMCID: PMC2665800.
    48. Yu J, Yu J, Rhodes DR, Tomlins SA, Cao X, Chen G, Mehra R, Wang X, Ghosh D, Shah RB, Varambally S, Pienta KJ, Chinnaiyan AM. A polycomb repression signature in metastatic prostate cancer predicts cancer outcome. Cancer Res. 2007 Nov 15; 67(22):10657-63. PMID: 18006806.
      View in: PubMed
    49. Choi H, Shen R, Chinnaiyan AM, Ghosh D. A latent variable approach for meta-analysis of gene expression data from multiple microarray experiments. BMC Bioinformatics. 2007 Sep 27; 8:364. PMID: 17900369; PMCID: PMC2246152.
    50. Kim JH, Dhanasekaran SM, Mehra R, Tomlins SA, Gu W, Yu J, Kumar-Sinha C, Cao X, Dash A, Wang L, Ghosh D, Shedden K, Montie JE, Rubin MA, Pienta KJ, Shah RB, Chinnaiyan AM. Integrative analysis of genomic aberrations associated with prostate cancer progression. Cancer Res. 2007 Sep 01; 67(17):8229-39. PMID: 17804737.
      View in: PubMed
    51. Ghosh D. Semiparametric inference for surrogate endpoints with bivariate censored data. Biometrics. 2008 Mar; 64(1):149-56. PMID: 17651457.
      View in: PubMed
    52. Ghosh D. Proportional hazards regression for cancer studies. Biometrics. 2008 Mar; 64(1):141-8. PMID: 17573863.
      View in: PubMed
    53. Poisson LM, Ghosh D. Statistical issues and analyses of in vivo and in vitro genomic data in order to identify clinically relevant profiles. Cancer Inform. 2007 May 10; 3:231-43. PMID: 19079768.
      View in: PubMed
    54. McEwen LN, Kim C, Karter AJ, Haan MN, Ghosh D, Lantz PM, Mangione CM, Thompson TJ, Herman WH. Risk factors for mortality among patients with diabetes: the Translating Research Into Action for Diabetes (TRIAD) Study. Diabetes Care. 2007 Jul; 30(7):1736-41. PMID: 17468353.
      View in: PubMed
    55. Chen G, Wang X, Yu J, Varambally S, Yu J, Thomas DG, Lin MY, Vishnu P, Wang Z, Wang R, Fielhauer J, Ghosh D, Giordano TJ, Giacherio D, Chang AC, Orringer MB, El-Hefnawy T, Bigbee WL, Beer DG, Chinnaiyan AM. Autoantibody profiles reveal ubiquilin 1 as a humoral immune response target in lung adenocarcinoma. Cancer Res. 2007 Apr 01; 67(7):3461-7. PMID: 17409457.
      View in: PubMed
    56. Shah RB, Ghosh D, Elder JT. Epidermal growth factor receptor (ErbB1) expression in prostate cancer progression: correlation with androgen independence. Prostate. 2006 Sep 15; 66(13):1437-44. PMID: 16741920.
      View in: PubMed
    57. MacDonald JW, Ghosh D. COPA--cancer outlier profile analysis. Bioinformatics. 2006 Dec 01; 22(23):2950-1. PMID: 16895932.
      View in: PubMed
    58. Ghosh D. Semi-parametric inferences for association with semi-competing risks data. Stat Med. 2006 Jun 30; 25(12):2059-70. PMID: 16196081.
      View in: PubMed
    59. Ghosh D. Modelling tumour biology-progression relationships in screening trials. Stat Med. 2006 Jun 15; 25(11):1872-84. PMID: 16220483.
      View in: PubMed
    60. Mehra R, Varambally S, Ding L, Shen R, Sabel MS, Ghosh D, Chinnaiyan AM, Kleer CG. Identification of GATA3 as a breast cancer prognostic marker by global gene expression meta-analysis. Cancer Res. 2005 Dec 15; 65(24):11259-64. PMID: 16357129.
      View in: PubMed
    61. Witkiewicz AK, Varambally S, Shen R, Mehra R, Sabel MS, Ghosh D, Chinnaiyan AM, Rubin MA, Kleer CG. Alpha-methylacyl-CoA racemase protein expression is associated with the degree of differentiation in breast cancer using quantitative image analysis. Cancer Epidemiol Biomarkers Prev. 2005 Jun; 14(6):1418-23. PMID: 15941950.
      View in: PubMed
    62. Rubin MA, Bismar TA, Andrén O, Mucci L, Kim R, Shen R, Ghosh D, Wei JT, Chinnaiyan AM, Adami HO, Kantoff PW, Johansson JE. Decreased alpha-methylacyl CoA racemase expression in localized prostate cancer is associated with an increased rate of biochemical recurrence and cancer-specific death. Cancer Epidemiol Biomarkers Prev. 2005 Jun; 14(6):1424-32. PMID: 15941951.
      View in: PubMed
    63. Abecasis GR, Ghosh D, Nichols TE. Linkage disequilibrium: ancient history drives the new genetics. Hum Hered. 2005; 59(2):118-24. PMID: 15838181.
      View in: PubMed
    64. Levin AM, Ghosh D, Cho KR, Kardia SL. A model-based scan statistic for identifying extreme chromosomal regions of gene expression in human tumors. Bioinformatics. 2005 Jun 15; 21(12):2867-74. PMID: 15814559.
      View in: PubMed
    65. Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S. Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data. BMC Bioinformatics. 2005 Feb 10; 6:26. PMID: 15705192; PMCID: PMC550659.
    66. Shah RB, Mehra R, Chinnaiyan AM, Shen R, Ghosh D, Zhou M, Macvicar GR, Varambally S, Harwood J, Bismar TA, Kim R, Rubin MA, Pienta KJ. Androgen-independent prostate cancer is a heterogeneous group of diseases: lessons from a rapid autopsy program. Cancer Res. 2004 Dec 15; 64(24):9209-16. PMID: 15604294.
      View in: PubMed
    67. Ghosh D, Chinnaiyan AM. Covariate adjustment in the analysis of microarray data from clinical studies. Funct Integr Genomics. 2005 Jan; 5(1):18-27. PMID: 15378393.
      View in: PubMed
    68. Ghosh D. Nonparametric methods for analyzing replication origins in genomewide data. Funct Integr Genomics. 2005 Jan; 5(1):28-31. PMID: 15599787.
      View in: PubMed
    69. Ghosh D. Accelerated rates regression models for recurrent failure time data. Lifetime Data Anal. 2004 Sep; 10(3):247-61. PMID: 15456106.
      View in: PubMed
    70. Ghosh D. Mixture models for assessing differential expression in complex tissues using microarray data. Bioinformatics. 2004 Jul 22; 20(11):1663-9. PMID: 14988124.
      View in: PubMed
    71. Smolkin M, Ghosh D. Cluster stability scores for microarray data in cancer studies. BMC Bioinformatics. 2003 Sep 06; 4:36. PMID: 12959646; PMCID: PMC200969.
    72. Ghosh D. Goodness-of-fit methods for additive-risk models in tumorigenicity experiments. Biometrics. 2003 Sep; 59(3):721-6. PMID: 14601774.
      View in: PubMed
    73. Ghosh D, Barette TR, Rhodes D, Chinnaiyan AM. Statistical issues and methods for meta-analysis of microarray data: a case study in prostate cancer. Funct Integr Genomics. 2003 Dec; 3(4):180-8. PMID: 12884057.
      View in: PubMed
    74. Rhodes DR, Barrette TR, Rubin MA, Ghosh D, Chinnaiyan AM. Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer. Cancer Res. 2002 Aug 01; 62(15):4427-33. PMID: 12154050.
      View in: PubMed
    75. Ghosh D. Resampling methods for variance estimation of singular value decomposition analyses from microarray experiments. Funct Integr Genomics. 2002 Aug; 2(3):92-7. PMID: 12185456.
      View in: PubMed
    76. Ghosh D, Chinnaiyan AM. Mixture modelling of gene expression data from microarray experiments. Bioinformatics. 2002 Feb; 18(2):275-86. PMID: 11847075.
      View in: PubMed
    Ghosh's Networks
    Click the "See All" links for more information and interactive visualizations!
    Concepts Expand Description
    _
    Co-Authors Expand Description
    _
    Similar People Expand Description
    _
    Same Department Expand Description
    Physical Neighbors Expand Description
    _

    Copyright © 2017 The Regents of the University of Colorado, a body corporate. All rights reserved. (Harvard PROFILES RNS software version: 2.10.0)