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David Albers

TitleAssociate Professor
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM-PEDS

    Collapse Research 
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    R01LM012734     (ALBERS, DAVID J.)Sep 20, 2017 - Aug 31, 2020
    NIH/NLM
    Mechanistic Machine Learning
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Albers DJ, Levine ME, Mamykina L, Hripcsak G. The parameter Houlihan: A solution to high-throughput identifiability indeterminacy for brutally ill-posed problems. Math Biosci. 2019 10; 316:108242. PMID: 31454628.
      View in: PubMed
    2. Woldaregay AZ, Årsand E, Walderhaug S, Albers D, Mamykina L, Botsis T, Hartvigsen G. Data-driven modeling and prediction of blood glucose dynamics: Machine learning applications in type 1 diabetes. Artif Intell Med. 2019 Jul; 98:109-134. PMID: 31383477.
      View in: PubMed
    3. Roh DJ, Albers DJ, Magid-Bernstein J, Doyle K, Hod E, Eisenberger A, Murthy S, Witsch J, Park S, Agarwal S, Connolly ES, Elkind MSV, Claassen J. Low hemoglobin and hematoma expansion after intracerebral hemorrhage. Neurology. 2019 07 23; 93(4):e372-e380. PMID: 31209179.
      View in: PubMed
    4. Woldaregay AZ, Årsand E, Botsis T, Albers D, Mamykina L, Hartvigsen G. Data-Driven Blood Glucose Pattern Classification and Anomalies Detection: Machine-Learning Applications in Type 1 Diabetes. J Med Internet Res. 2019 05 01; 21(5):e11030. PMID: 31042157.
      View in: PubMed
    5. Albers DJ, Levine ME, Stuart A, Mamykina L, Gluckman B, Hripcsak G. Mechanistic machine learning: how data assimilation leverages physiologic knowledge using Bayesian inference to forecast the future, infer the present, and phenotype. J Am Med Inform Assoc. 2018 10 01; 25(10):1392-1401. PMID: 30312445.
      View in: PubMed
    6. Feller DJ, Burgermaster M, Levine ME, Smaldone A, Davidson PG, Albers DJ, Mamykina L. A visual analytics approach for pattern-recognition in patient-generated data. J Am Med Inform Assoc. 2018 10 01; 25(10):1366-1374. PMID: 29905826.
      View in: PubMed
    7. Levine ME, Albers DJ, Hripcsak G. Methodological variations in lagged regression for detecting physiologic drug effects in EHR data. J Biomed Inform. 2018 10; 86:149-159. PMID: 30172760.
      View in: PubMed
    8. Sottile PD, Albers D, Moss MM. Neuromuscular blockade is associated with the attenuation of biomarkers of epithelial and endothelial injury in patients with moderate-to-severe acute respiratory distress syndrome. Crit Care. 2018 Mar 10; 22(1):63. PMID: 29523157.
      View in: PubMed
    9. Sottile PD, Albers D, Higgins C, Mckeehan J, Moss MM. The Association Between Ventilator Dyssynchrony, Delivered Tidal Volume, and Sedation Using a Novel Automated Ventilator Dyssynchrony Detection Algorithm. Crit Care Med. 2018 02; 46(2):e151-e157. PMID: 29337804.
      View in: PubMed
    10. Albers DJ, Elhadad N, Claassen J, Perotte R, Goldstein A, Hripcsak G. Estimating summary statistics for electronic health record laboratory data for use in high-throughput phenotyping algorithms. J Biomed Inform. 2018 02; 78:87-101. PMID: 29369797.
      View in: PubMed
    11. Hripcsak G, Albers DJ. High-fidelity phenotyping: richness and freedom from bias. J Am Med Inform Assoc. 2017 Oct 12. PMID: 29040596.
      View in: PubMed
    12. Chakrabarti S, Sen A, Huser V, Hruby GW, Rusanov A, Albers DJ, Weng C. An Interoperable Similarity-based Cohort Identification Method Using the OMOP Common Data Model version 5.0. J Healthc Inform Res. 2017 Jun; 1(1):1-18. PMID: 28776047.
      View in: PubMed
    13. Albers DJ, Levine M, Gluckman B, Ginsberg H, Hripcsak G, Mamykina L. Personalized glucose forecasting for type 2 diabetes using data assimilation. PLoS Comput Biol. 2017 04; 13(4):e1005232. PMID: 28448498.
      View in: PubMed
    14. Levine ME, Albers DJ, Hripcsak G. Comparing lagged linear correlation, lagged regression, Granger causality, and vector autoregression for uncovering associations in EHR data. AMIA Annu Symp Proc. 2016; 2016:779-788. PMID: 28269874.
      View in: PubMed
    15. Claassen J, Rahman SA, Huang Y, Frey HP, Schmidt JM, Albers D, Falo CM, Park S, Agarwal S, Connolly ES, Kleinberg S. Causal Structure of Brain Physiology after Brain Injury from Subarachnoid Hemorrhage. PLoS One. 2016; 11(4):e0149878. PMID: 27123582.
      View in: PubMed
    16. Mamykina L, Levine ME, Davidson PG, Smaldone AM, Elhadad N, Albers DJ. Data-driven health management: reasoning about personally generated data in diabetes with information technologies. J Am Med Inform Assoc. 2016 05; 23(3):526-31. PMID: 26984049.
      View in: PubMed
    17. Hripcsak G, Albers DJ, Perotte A. Parameterizing time in electronic health record studies. J Am Med Inform Assoc. 2015 Jul; 22(4):794-804. PMID: 25725004.
      View in: PubMed
    18. Albers DJ, Elhadad N, Tabak E, Perotte A, Hripcsak G. Dynamical phenotyping: using temporal analysis of clinically collected physiologic data to stratify populations. PLoS One. 2014; 9(6):e96443. PMID: 24933368.
      View in: PubMed
    19. Pivovarov R, Albers DJ, Hripcsak G, Sepulveda JL, Elhadad N. Temporal trends of hemoglobin A1c testing. J Am Med Inform Assoc. 2014 Nov-Dec; 21(6):1038-44. PMID: 24928176.
      View in: PubMed
    20. Schmidt JM, Sow D, Crimmins M, Albers D, Agarwal S, Claassen J, Connolly ES, Elkind MS, Hripcsak G, Mayer SA. Heart rate variability for preclinical detection of secondary complications after subarachnoid hemorrhage. Neurocrit Care. 2014 Jun; 20(3):382-9. PMID: 24610353.
      View in: PubMed
    21. Claassen J, Albers D, Schmidt JM, De Marchis GM, Pugin D, Falo CM, Mayer SA, Cremers S, Agarwal S, Elkind MS, Connolly ES, Dukic V, Hripcsak G, Badjatia N. Nonconvulsive seizures in subarachnoid hemorrhage link inflammation and outcome. Ann Neurol. 2014 May; 75(5):771-81. PMID: 24771589.
      View in: PubMed
    22. Pivovarov R, Albers DJ, Sepulveda JL, Elhadad N. Identifying and mitigating biases in EHR laboratory tests. J Biomed Inform. 2014 Oct; 51:24-34. PMID: 24727481.
      View in: PubMed
    23. Hripcsak G, Albers DJ. Correlating electronic health record concepts with healthcare process events. J Am Med Inform Assoc. 2013 Dec; 20(e2):e311-8. PMID: 23975625.
      View in: PubMed
    24. Claassen J, Perotte A, Albers D, Kleinberg S, Schmidt JM, Tu B, Badjatia N, Lantigua H, Hirsch LJ, Mayer SA, Connolly ES, Hripcsak G. Nonconvulsive seizures after subarachnoid hemorrhage: Multimodal detection and outcomes. Ann Neurol. 2013 Jul; 74(1):53-64. PMID: 23813945.
      View in: PubMed
    25. Boland MR, Hripcsak G, Albers DJ, Wei Y, Wilcox AB, Wei J, Li J, Lin S, Breene M, Myers R, Zimmerman J, Papapanou PN, Weng C. Discovering medical conditions associated with periodontitis using linked electronic health records. J Clin Periodontol. 2013 May; 40(5):474-82. PMID: 23495669.
      View in: PubMed
    26. Albers DJ, Hripcsak G, Schmidt M. Population physiology: leveraging electronic health record data to understand human endocrine dynamics. PLoS One. 2012; 7(12):e48058. PMID: 23272040.
      View in: PubMed
    27. Hripcsak G, Albers DJ. Next-generation phenotyping of electronic health records. J Am Med Inform Assoc. 2013 Jan 01; 20(1):117-21. PMID: 22955496.
      View in: PubMed
    28. Albers DJ, Hripcsak G. Estimation of time-delayed mutual information and bias for irregularly and sparsely sampled time-series. Chaos Solitons Fractals. 2012 Jun 01; 45(6):853-860. PMID: 22536009.
      View in: PubMed
    29. Albers DJ, Hripcsak G. Using time-delayed mutual information to discover and interpret temporal correlation structure in complex populations. Chaos. 2012 Mar; 22(1):013111. PMID: 22462987.
      View in: PubMed
    30. Hripcsak G, Albers DJ, Perotte A. Exploiting time in electronic health record correlations. J Am Med Inform Assoc. 2011 Dec; 18 Suppl 1:i109-15. PMID: 22116643.
      View in: PubMed
    31. Albers DJ, Hripcsak G. A statistical dynamics approach to the study of human health data: resolving population scale diurnal variation in laboratory data. Phys Lett A. 2010 Feb 15; 374(9):1159-1164. PMID: 20544004.
      View in: PubMed
    32. Lorenzl S, Albers DS, Relkin N, Ngyuen T, Hilgenberg SL, Chirichigno J, Cudkowicz ME, Beal MF. Increased plasma levels of matrix metalloproteinase-9 in patients with Alzheimer's disease. Neurochem Int. 2003 Aug; 43(3):191-6. PMID: 12689599.
      View in: PubMed
    33. Chirichigno JW, Manfredi G, Beal MF, Albers DS. Stress-induced mitochondrial depolarization and oxidative damage in PSP cybrids. Brain Res. 2002 Sep 27; 951(1):31-5. PMID: 12231453.
      View in: PubMed
    34. Albers DS, Beal MF. Mitochondrial dysfunction in progressive supranuclear palsy. Neurochem Int. 2002 May; 40(6):559-64. PMID: 11850113.
      View in: PubMed
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