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Fuyong Xing

TitleAsst Professor
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentCSPH-Bio Info General Ops

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    R21CA237493     (XING, FUYONG)Apr 2, 2019 - Mar 31, 2021
    NIH/NCI
    Development and Dissemination of KiNet: A Novel Imaging Informatics Tool for Gastrointestinal and Pancreatic Neuroendocrine Tumors
    Role: Principal Investigator

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    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Zhang X, Cornish TC, Yang L, Bennett TD, Ghosh D, Xing F. Generative Adversarial Domain Adaptation for Nucleus Quantification in Images of Tissue Immunohistochemically Stained for Ki-67. JCO Clin Cancer Inform. 2020 Jul; 4:666-679. PMID: 32730116.
      View in: PubMed
    2. Warsavage T, Xing F, BarĂ³n AE, Feser WJ, Hirsch E, Miller YE, Malkoski S, Wolf HJ, Wilson DO, Ghosh D. Quantifying the incremental value of deep learning: Application to lung nodule detection. PLoS One. 2020; 15(4):e0231468. PMID: 32287288.
      View in: PubMed
    3. Tiwari P, Colborn KL, Smith DE, Xing F, Ghosh D, Rosenberg MA. Assessment of a Machine Learning Model Applied to Harmonized Electronic Health Record Data for the Prediction of Incident Atrial Fibrillation. JAMA Netw Open. 2020 01 03; 3(1):e1919396. PMID: 31951272.
      View in: PubMed
    4. Shi X, Su H, Xing F, Liang Y, Qu G, Yang L. Graph temporal ensembling based semi-supervised convolutional neural network with noisy labels for histopathology image analysis. Med Image Anal. 2020 02; 60:101624. PMID: 31841948.
      View in: PubMed
    5. Xing F, Xie Y, Shi X, Chen P, Zhang Z, Yang L. Correction to: Towards pixel-to-pixel deep nucleus detection in microscopy images. BMC Bioinformatics. 2019 Oct 22; 20(1):509. PMID: 31640559.
      View in: PubMed
    6. Xing F, Bennett T, Ghosh D. Adversarial Domain Adaptation and Pseudo-Labeling for Cross-Modality Microscopy Image Quantification. Med Image Comput Comput Assist Interv. 2019 Oct; 11764:740-749. PMID: 31825019.
      View in: PubMed
    7. Xing F, Xie Y, Shi X, Chen P, Zhang Z, Yang L. Towards pixel-to-pixel deep nucleus detection in microscopy images. BMC Bioinformatics. 2019 Sep 14; 20(1):472. PMID: 31521104.
      View in: PubMed
    8. Jensen AM, Tregellas JR, Sutton B, Xing F, Ghosh D. Kernel machine tests of association between brain networks and phenotypes. PLoS One. 2019; 14(3):e0199340. PMID: 30897094.
      View in: PubMed
    9. Xing F, Cornish TC, Bennett T, Ghosh D, Yang L. Pixel-to-Pixel Learning With Weak Supervision for Single-Stage Nucleus Recognition in Ki67 Images. IEEE Trans Biomed Eng. 2019 11; 66(11):3088-3097. PMID: 30802845.
      View in: PubMed
    10. Cai J, Xing F, Batra A, Liu F, Walter GA, Vandenborne K, Yang L. Texture Analysis for Muscular Dystrophy Classification in MRI with Improved Class Activation Mapping. Pattern Recognit. 2019 Feb; 86:368-375. PMID: 31105339.
      View in: PubMed
    11. Sapkota M, Shi X, Xing F, Yang L. Deep Convolutional Hashing for Low-Dimensional Binary Embedding of Histopathological Images. IEEE J Biomed Health Inform. 2019 03; 23(2):805-816. PMID: 29993648.
      View in: PubMed
    12. Shi X, Xing F, Xu K, Xie Y, Su H, Yang L. Supervised graph hashing for histopathology image retrieval and classification. Med Image Anal. 2017 Dec; 42:117-128. PMID: 28783503.
      View in: PubMed
    13. Xie Y, Xing F, Shi X, Kong X, Su H, Yang L. Efficient and robust cell detection: A structured regression approach. Med Image Anal. 2018 02; 44:245-254. PMID: 28797548.
      View in: PubMed
    14. Sapkota M, Liu F, Xie Y, Su H, Xing F, Yang L. AIIMDs: An Integrated Framework of Automatic Idiopathic Inflammatory Myopathy Diagnosis for Muscle. IEEE J Biomed Health Inform. 2018 05; 22(3):942-954. PMID: 28422672.
      View in: PubMed
    15. Zhang Z, Xing F, Shi X, Yang L. SemiContour: A Semi-supervised Learning Approach for Contour Detection. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2016 Jun; 2016:251-259. PMID: 28496297.
      View in: PubMed
    16. Xing F, Shi X, Zhang Z, Cai J, Xie Y, Yang L. Transfer Shape Modeling Towards High-throughput Microscopy Image Segmentation. Med Image Comput Comput Assist Interv. 2016 Oct; 9902:183-190. PMID: 27924318.
      View in: PubMed
    17. Cai J, Lu L, Zhang Z, Xing F, Yang L, Yin Q. Pancreas Segmentation in MRI using Graph-Based Decision Fusion on Convolutional Neural Networks. Med Image Comput Comput Assist Interv. 2016 Oct; 9901:442-450. PMID: 28083570.
      View in: PubMed
    18. Su H, Xing F, Yang L. Robust Cell Detection of Histopathological Brain Tumor Images Using Sparse Reconstruction and Adaptive Dictionary Selection. IEEE Trans Med Imaging. 2016 06; 35(6):1575-86. PMID: 26812706.
      View in: PubMed
    19. Xing F, Yang L. Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review. IEEE Rev Biomed Eng. 2016; 9:234-63. PMID: 26742143.
      View in: PubMed
    20. Xing F, Yang L. Fast Cell Segmentation Using Scalable Sparse Manifold Learning and Affine Transform-approximated Active Contour. Med Image Comput Comput Assist Interv. 2015 Oct; 9351:332-339. PMID: 27924317.
      View in: PubMed
    21. Xie Y, Kong X, Xing F, Liu F, Su H, Yang L. Deep Voting: A Robust Approach Toward Nucleus Localization in Microscopy Images. Med Image Comput Comput Assist Interv. 2015 Oct; 9351:374-382. PMID: 28083567.
      View in: PubMed
    22. Su H, Xing F, Kong X, Xie Y, Zhang S, Yang L. Robust Cell Detection and Segmentation in Histopathological Images Using Sparse Reconstruction and Stacked Denoising Autoencoders. Med Image Comput Comput Assist Interv. 2015 Oct; 9351:383-390. PMID: 27796013.
      View in: PubMed
    23. Xie Y, Xing F, Kong X, Su H, Yang L. Beyond Classification: Structured Regression for Robust Cell Detection Using Convolutional Neural Network. Med Image Comput Comput Assist Interv. 2015 Oct; 9351:358-365. PMID: 28090601.
      View in: PubMed
    24. Zhang X, Xing F, Su H, Yang L, Zhang S. High-throughput histopathological image analysis via robust cell segmentation and hashing. Med Image Anal. 2015 Dec; 26(1):306-15. PMID: 26599156.
      View in: PubMed
    25. Xing F, Xie Y, Yang L. An Automatic Learning-Based Framework for Robust Nucleus Segmentation. IEEE Trans Med Imaging. 2016 Feb; 35(2):550-66. PMID: 26415167.
      View in: PubMed
    26. Xing F, Yang L. UNSUPERVISED SHAPE PRIOR MODELING FOR CELL SEGMENTATION IN NEUROENDOCRINE TUMOR. Proc IEEE Int Symp Biomed Imaging. 2015 Apr; 2015:1443-1446. PMID: 27924189.
      View in: PubMed
    27. Sapkota M, Xing F, Su H, Yang L. AUTOMATIC MUSCLE PERIMYSIUM ANNOTATION USING DEEP CONVOLUTIONAL NEURAL NETWORK. Proc IEEE Int Symp Biomed Imaging. 2015 Apr; 2015:205-208. PMID: 28435514.
      View in: PubMed
    28. Su H, Shen Y, Xing F, Qi X, Hirshfield KM, Yang L, Foran DJ. Robust automatic breast cancer staging using a combination of functional genomics and image-omics. Annu Int Conf IEEE Eng Med Biol Soc. 2015; 2015:7226-9. PMID: 26737959.
      View in: PubMed
    29. Wang H, Xing F, Su H, Stromberg A, Yang L. Novel image markers for non-small cell lung cancer classification and survival prediction. BMC Bioinformatics. 2014 Sep 19; 15:310. PMID: 25240495.
      View in: PubMed
    30. Qi X, Wang D, Rodero I, Diaz-Montes J, Gensure RH, Xing F, Zhong H, Goodell L, Parashar M, Foran DJ, Yang L. Content-based histopathology image retrieval using CometCloud. BMC Bioinformatics. 2014 Aug 26; 15:287. PMID: 25155691.
      View in: PubMed
    31. Su H, Xing F, Lee JD, Peterson CA, Yang L. Automatic Myonuclear Detection in Isolated Single Muscle Fibers Using Robust Ellipse Fitting and Sparse Representation. IEEE/ACM Trans Comput Biol Bioinform. 2014 Jul-Aug; 11(4):714-26. PMID: 26356342.
      View in: PubMed
    32. Xing F, Su H, Neltner J, Yang L. Automatic Ki-67 counting using robust cell detection and online dictionary learning. IEEE Trans Biomed Eng. 2014 Mar; 61(3):859-70. PMID: 24557687.
      View in: PubMed
    33. Yang L, Qi X, Xing F, Kurc T, Saltz J, Foran DJ. Parallel content-based sub-image retrieval using hierarchical searching. Bioinformatics. 2014 Apr 01; 30(7):996-1002. PMID: 24215030.
      View in: PubMed
    34. Xing F, Su H, Yang L. An integrated framework for automatic Ki-67 scoring in pancreatic neuroendocrine tumor. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):436-43. PMID: 24505696.
      View in: PubMed
    35. Xing F, Yang L. Robust selection-based sparse shape model for lung cancer image segmentation. Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):404-12. PMID: 24505787.
      View in: PubMed
    36. Qi X, Kim H, Xing F, Parashar M, Foran DJ, Yang L. The analysis of image feature robustness using cometcloud. J Pathol Inform. 2012; 3:33. PMID: 23248759.
      View in: PubMed
    37. Qi X, Xing F, Foran DJ, Yang L. Robust segmentation of overlapping cells in histopathology specimens using parallel seed detection and repulsive level set. IEEE Trans Biomed Eng. 2012 Mar; 59(3):754-65. PMID: 22167559.
      View in: PubMed
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