 Fuyong Xing
| Title | Asst Professor |
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| Institution | University of Colorado Denver - Anschutz Medical Campus |
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| Department | CSPH-Bio Info General Ops |
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 Research R21CA237493 (XING, FUYONG)Apr 2, 2019 - Mar 31, 2021 NIH
Development and Dissemination of KiNet: A Novel Imaging Informatics Tool for Gastrointestinal and Pancreatic Neuroendocrine Tumors
Role: Principal Investigator |
Bibliographic
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Chen P, El Hussein S, Xing F, Aminu M, Kannapiran A, Hazle JD, Medeiros LJ, Wistuba II, Jaffray D, Khoury JD, Wu J. Chronic Lymphocytic Leukemia Progression Diagnosis with Intrinsic Cellular Patterns via Unsupervised Clustering. Cancers (Basel). 2022 May 13; 14(10). PMID: 35626003.
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Ryan SM, Carlson NE, Butler H, Fingerlin TE, Maier LA, Xing F. Cluster activation mapping with application to computed tomography scans of the lung. J Med Imaging (Bellingham). 2022 Mar; 9(2):026001. PMID: 35274026.
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Zhuang Y, Xing F, Ghosh D, Banaei-Kashani F, Bowler RP, Kechris K. An Augmented High-Dimensional Graphical Lasso Method to Incorporate Prior Biological Knowledge for Global Network Learning. Front Genet. 2021; 12:760299. PMID: 35154240.
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Wehrend J, Silosky M, Xing F, Chin BB. Automated liver lesion detection in 68Ga DOTATATE PET/CT using a deep fully convolutional neural network. EJNMMI Res. 2021 Oct 02; 11(1):98. PMID: 34601660.
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Xing F, Cornish TC, Bennett TD, Ghosh D. Bidirectional Mapping-Based Domain Adaptation for Nucleus Detection in Cross-Modality Microscopy Images. IEEE Trans Med Imaging. 2021 10; 40(10):2880-2896. PMID: 33284750.
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Shi X, Xing F, Xu K, Chen P, Liang Y, Lu Z, Guo Z. Loss-Based Attention for Interpreting Image-Level Prediction of Convolutional Neural Networks. IEEE Trans Image Process. 2021; 30:1662-1675. PMID: 33382655.
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Shi X, Xing F, Zhang Z, Sapkota M, Guo Z, Yang L. A Scalable Optimization Mechanism for Pairwise Based Discrete Hashing. IEEE Trans Image Process. 2021; 30:1130-1142. PMID: 33270563.
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Zhang X, Cornish TC, Yang L, Bennett TD, Ghosh D, Xing F. Generative Adversarial Domain Adaptation for Nucleus Quantification in Images of Tissue Immunohistochemically Stained for Ki-67. JCO Clin Cancer Inform. 2020 07; 4:666-679. PMID: 32730116.
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Warsavage T, Xing F, Barón AE, Feser WJ, Hirsch E, Miller YE, Malkoski S, Wolf HJ, Wilson DO, Ghosh D. Quantifying the incremental value of deep learning: Application to lung nodule detection. PLoS One. 2020; 15(4):e0231468. PMID: 32287288.
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Tiwari P, Colborn KL, Smith DE, Xing F, Ghosh D, Rosenberg MA. Assessment of a Machine Learning Model Applied to Harmonized Electronic Health Record Data for the Prediction of Incident Atrial Fibrillation. JAMA Netw Open. 2020 01 03; 3(1):e1919396. PMID: 31951272.
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Shi X, Su H, Xing F, Liang Y, Qu G, Yang L. Graph temporal ensembling based semi-supervised convolutional neural network with noisy labels for histopathology image analysis. Med Image Anal. 2020 02; 60:101624. PMID: 31841948.
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Xing F, Xie Y, Shi X, Chen P, Zhang Z, Yang L. Correction to: Towards pixel-to-pixel deep nucleus detection in microscopy images. BMC Bioinformatics. 2019 Oct 22; 20(1):509. PMID: 31640559.
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Xing F, Bennett T, Ghosh D. Adversarial Domain Adaptation and Pseudo-Labeling for Cross-Modality Microscopy Image Quantification. Med Image Comput Comput Assist Interv. 2019 Oct; 11764:740-749. PMID: 31825019.
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Xing F, Xie Y, Shi X, Chen P, Zhang Z, Yang L. Towards pixel-to-pixel deep nucleus detection in microscopy images. BMC Bioinformatics. 2019 Sep 14; 20(1):472. PMID: 31521104.
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Jensen AM, Tregellas JR, Sutton B, Xing F, Ghosh D. Kernel machine tests of association between brain networks and phenotypes. PLoS One. 2019; 14(3):e0199340. PMID: 30897094.
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Xing F, Cornish TC, Bennett T, Ghosh D, Yang L. Pixel-to-Pixel Learning With Weak Supervision for Single-Stage Nucleus Recognition in Ki67 Images. IEEE Trans Biomed Eng. 2019 11; 66(11):3088-3097. PMID: 30802845.
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Sapkota M, Shi X, Xing F, Yang L. Deep Convolutional Hashing for Low-Dimensional Binary Embedding of Histopathological Images. IEEE J Biomed Health Inform. 2019 03; 23(2):805-816. PMID: 29993648.
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Shi X, Xing F, Xu K, Xie Y, Su H, Yang L. Supervised graph hashing for histopathology image retrieval and classification. Med Image Anal. 2017 Dec; 42:117-128. PMID: 28783503.
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Xie Y, Xing F, Shi X, Kong X, Su H, Yang L. Efficient and robust cell detection: A structured regression approach. Med Image Anal. 2018 02; 44:245-254. PMID: 28797548.
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Sapkota M, Liu F, Xie Y, Su H, Xing F, Yang L. AIIMDs: An Integrated Framework of Automatic Idiopathic Inflammatory Myopathy Diagnosis for Muscle. IEEE J Biomed Health Inform. 2018 05; 22(3):942-954. PMID: 28422672.
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Zhang Z, Xing F, Shi X, Yang L. SemiContour: A Semi-supervised Learning Approach for Contour Detection. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2016 Jun; 2016:251-259. PMID: 28496297.
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Cai J, Lu L, Zhang Z, Xing F, Yang L, Yin Q. Pancreas Segmentation in MRI using Graph-Based Decision Fusion on Convolutional Neural Networks. Med Image Comput Comput Assist Interv. 2016 Oct; 9901:442-450. PMID: 28083570.
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Xing F, Shi X, Zhang Z, Cai J, Xie Y, Yang L. Transfer Shape Modeling Towards High-throughput Microscopy Image Segmentation. Med Image Comput Comput Assist Interv. 2016 Oct; 9902:183-190. PMID: 27924318.
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Xing F, Yang L. Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review. IEEE Rev Biomed Eng. 2016; 9:234-63. PMID: 26742143.
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Su H, Xing F, Kong X, Xie Y, Zhang S, Yang L. Robust Cell Detection and Segmentation in Histopathological Images Using Sparse Reconstruction and Stacked Denoising Autoencoders. Med Image Comput Comput Assist Interv. 2015 Oct; 9351:383-390. PMID: 27796013.
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Xie Y, Kong X, Xing F, Liu F, Su H, Yang L. Deep Voting: A Robust Approach Toward Nucleus Localization in Microscopy Images. Med Image Comput Comput Assist Interv. 2015 Oct; 9351:374-382. PMID: 28083567.
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Xie Y, Xing F, Kong X, Su H, Yang L. Beyond Classification: Structured Regression for Robust Cell Detection Using Convolutional Neural Network. Med Image Comput Comput Assist Interv. 2015 Oct; 9351:358-365. PMID: 28090601.
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Zhang X, Xing F, Su H, Yang L, Zhang S. High-throughput histopathological image analysis via robust cell segmentation and hashing. Med Image Anal. 2015 Dec; 26(1):306-15. PMID: 26599156.
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Xing F, Xie Y, Yang L. An Automatic Learning-Based Framework for Robust Nucleus Segmentation. IEEE Trans Med Imaging. 2016 Feb; 35(2):550-66. PMID: 26415167.
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Sapkota M, Xing F, Su H, Yang L. AUTOMATIC MUSCLE PERIMYSIUM ANNOTATION USING DEEP CONVOLUTIONAL NEURAL NETWORK. Proc IEEE Int Symp Biomed Imaging. 2015 Apr; 2015:205-208. PMID: 28435514.
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Wang H, Xing F, Su H, Stromberg A, Yang L. Novel image markers for non-small cell lung cancer classification and survival prediction. BMC Bioinformatics. 2014 Sep 19; 15:310. PMID: 25240495.
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Qi X, Wang D, Rodero I, Diaz-Montes J, Gensure RH, Xing F, Zhong H, Goodell L, Parashar M, Foran DJ, Yang L. Content-based histopathology image retrieval using CometCloud. BMC Bioinformatics. 2014 Aug 26; 15:287. PMID: 25155691.
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Yang L, Qi X, Xing F, Kurc T, Saltz J, Foran DJ. Parallel content-based sub-image retrieval using hierarchical searching. Bioinformatics. 2014 Apr 01; 30(7):996-1002. PMID: 24215030.
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Xing F, Su H, Yang L. An integrated framework for automatic Ki-67 scoring in pancreatic neuroendocrine tumor. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):436-43. PMID: 24505696.
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Xing F, Yang L. Robust selection-based sparse shape model for lung cancer image segmentation. Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):404-12. PMID: 24505787.
This graph shows the total number of publications by year, by first, middle/unknown, or last author.
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| Year | Publications |
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| 2013 | 3 | | 2014 | 2 | | 2015 | 6 | | 2016 | 4 | | 2017 | 3 | | 2018 | 1 | | 2019 | 6 | | 2020 | 4 | | 2021 | 3 | | 2022 | 3 |
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