 Connection
Gregg Beckham to Pseudomonas putida
This is a "connection" page, showing publications Gregg Beckham has written about Pseudomonas putida.
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Connection Strength |
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16.074 |
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Mains KM, Palumbo CT, Rigo D, Webber MS, Rosetto G, Bao ST, Carroll AL, Meyer NR, Benson AF, Boyle BA, Haugen SJ, Ingraham MA, Alexander WG, Silberman M, Myers LC, Ramirez KJ, Sullivan KP, Guss AM, Salvachúa D, Román-Leshkov Y, Stahl SS, Werner AZ, Beckham GT. Lignin to adipic acid in a high-yield chemical and biological redox process. Nature. 2026 Jun; 654(8119):668-675.
Score: 0.892
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Werner AZ, Giannone RJ, Keller MJ, Plavchak C, Carper DL, Abraham PE, Wilkes RA, Aristilde L, Salvachúa D, Ratanathanawongs Williams SK, Hettich RL, Beckham GT. A distinct subpopulation of membrane vesicles in Pseudomonas putida is enriched in enzymes for lignin catabolism. Appl Environ Microbiol. 2025 Oct 22; 91(10):e0161725.
Score: 0.851
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Werner AZ, Avina YC, Johnsen J, Bratti F, Alt HM, Mohamed ET, Clare R, Mand TD, Guss AM, Feist AM, Beckham GT. Adaptive laboratory evolution and genetic engineering improved terephthalate utilization in Pseudomonas putida KT2440. Metab Eng. 2025 Mar; 88:196-205.
Score: 0.805
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Bleem AC, Kuatsjah E, Johnsen J, Mohamed ET, Alexander WG, Kellermyer ZA, Carroll AL, Rossi R, Schlander IB, Peabody V GL, Guss AM, Feist AM, Beckham GT. Evolution and engineering of pathways for aromatic O-demethylation in Pseudomonas putida KT2440. Metab Eng. 2024 Jul; 84:145-157.
Score: 0.779
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Borchert AJ, Bleem AC, Lim HG, Rychel K, Dooley KD, Kellermyer ZA, Hodges TL, Palsson BO, Beckham GT. Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in Pseudomonas putida KT2440. mSystems. 2024 03 19; 9(3):e0094223.
Score: 0.759
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Amendola CR, Cordell WT, Kneucker CM, Szostkiewicz CJ, Ingraham MA, Monninger M, Wilton R, Pfleger BF, Salvachúa D, Johnson CW, Beckham GT. Comparison of wild-type KT2440 and genome-reduced EM42 Pseudomonas putida strains for muconate production from aromatic compounds and glucose. Metab Eng. 2024 Jan; 81:88-99.
Score: 0.748
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Cywar RM, Ling C, Clarke RW, Kim DH, Kneucker CM, Salvachúa D, Addison B, Hesse SA, Takacs CJ, Xu S, Demirtas MU, Woodworth SP, Rorrer NA, Johnson CW, Tassone CJ, Allen RD, Chen EY, Beckham GT. Elastomeric vitrimers from designer polyhydroxyalkanoates with recyclability and biodegradability. Sci Adv. 2023 11 24; 9(47):eadi1735.
Score: 0.748
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Borchert AJ, Bleem A, Beckham GT. RB-TnSeq identifies genetic targets for improved tolerance of Pseudomonas putida towards compounds relevant to lignin conversion. Metab Eng. 2023 05; 77:208-218.
Score: 0.717
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McNaught KJ, Kuatsjah E, Zahn M, Prates ÉT, Shao H, Bentley GJ, Pickford AR, Gruber JN, Hestmark KV, Jacobson DA, Poirier BC, Ling C, San Marchi M, Michener WE, Nicora CD, Sanders JN, Szostkiewicz CJ, Velickovic D, Zhou M, Munoz N, Kim YM, Magnuson JK, Burnum-Johnson KE, Houk KN, McGeehan JE, Johnson CW, Beckham GT. Initiation of fatty acid biosynthesis in Pseudomonas putida KT2440. Metab Eng. 2023 03; 76:193-203.
Score: 0.709
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Sullivan KP, Werner AZ, Ramirez KJ, Ellis LD, Bussard JR, Black BA, Brandner DG, Bratti F, Buss BL, Dong X, Haugen SJ, Ingraham MA, Konev MO, Michener WE, Miscall J, Pardo I, Woodworth SP, Guss AM, Román-Leshkov Y, Stahl SS, Beckham GT. Mixed plastics waste valorization through tandem chemical oxidation and biological funneling. Science. 2022 10 14; 378(6616):207-211.
Score: 0.693
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Ling C, Peabody GL, Salvachúa D, Kim YM, Kneucker CM, Calvey CH, Monninger MA, Munoz NM, Poirier BC, Ramirez KJ, St John PC, Woodworth SP, Magnuson JK, Burnum-Johnson KE, Guss AM, Johnson CW, Beckham GT. Muconic acid production from glucose and xylose in Pseudomonas putida via evolution and metabolic engineering. Nat Commun. 2022 08 22; 13(1):4925.
Score: 0.686
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Borchert AJ, Bleem A, Beckham GT. Experimental and Analytical Approaches for Improving the Resolution of Randomly Barcoded Transposon Insertion Sequencing (RB-TnSeq) Studies. ACS Synth Biol. 2022 06 17; 11(6):2015-2021.
Score: 0.675
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Kuatsjah E, Johnson CW, Salvachúa D, Werner AZ, Zahn M, Szostkiewicz CJ, Singer CA, Dominick G, Okekeogbu I, Haugen SJ, Woodworth SP, Ramirez KJ, Giannone RJ, Hettich RL, McGeehan JE, Beckham GT. Debottlenecking 4-hydroxybenzoate hydroxylation in Pseudomonas putida KT2440 improves muconate productivity from p-coumarate. Metab Eng. 2022 03; 70:31-42.
Score: 0.656
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Henson WR, Meyers AW, Jayakody LN, DeCapite A, Black BA, Michener WE, Johnson CW, Beckham GT. Biological upgrading of pyrolysis-derived wastewater: Engineering Pseudomonas putida for alkylphenol, furfural, and acetone catabolism and (methyl)muconic acid production. Metab Eng. 2021 11; 68:14-25.
Score: 0.640
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Werner AZ, Clare R, Mand TD, Pardo I, Ramirez KJ, Haugen SJ, Bratti F, Dexter GN, Elmore JR, Huenemann JD, Peabody GL, Johnson CW, Rorrer NA, Salvachúa D, Guss AM, Beckham GT. Tandem chemical deconstruction and biological upcycling of poly(ethylene terephthalate) to ß-ketoadipic acid by Pseudomonas putida KT2440. Metab Eng. 2021 09; 67:250-261.
Score: 0.635
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Notonier S, Werner AZ, Kuatsjah E, Dumalo L, Abraham PE, Hatmaker EA, Hoyt CB, Amore A, Ramirez KJ, Woodworth SP, Klingeman DM, Giannone RJ, Guss AM, Hettich RL, Eltis LD, Johnson CW, Beckham GT. Metabolism of syringyl lignin-derived compounds in Pseudomonas putida enables convergent production of 2-pyrone-4,6-dicarboxylic acid. Metab Eng. 2021 05; 65:111-122.
Score: 0.621
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Salvachúa D, Werner AZ, Pardo I, Michalska M, Black BA, Donohoe BS, Haugen SJ, Katahira R, Notonier S, Ramirez KJ, Amore A, Purvine SO, Zink EM, Abraham PE, Giannone RJ, Poudel S, Laible PD, Hettich RL, Beckham GT. Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440. Proc Natl Acad Sci U S A. 2020 04 28; 117(17):9302-9310.
Score: 0.581
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Bentley GJ, Narayanan N, Jha RK, Salvachúa D, Elmore JR, Peabody GL, Black BA, Ramirez K, De Capite A, Michener WE, Werner AZ, Klingeman DM, Schindel HS, Nelson R, Foust L, Guss AM, Dale T, Johnson CW, Beckham GT. Engineering glucose metabolism for enhanced muconic acid production in Pseudomonas putida KT2440. Metab Eng. 2020 05; 59:64-75.
Score: 0.572
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Franden MA, Jayakody LN, Li WJ, Wagner NJ, Cleveland NS, Michener WE, Hauer B, Blank LM, Wierckx N, Klebensberger J, Beckham GT. Engineering Pseudomonas putida KT2440 for efficient ethylene glycol utilization. Metab Eng. 2018 07; 48:197-207.
Score: 0.512
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Johnson CW, Beckham GT. Aromatic catabolic pathway selection for optimal production of pyruvate and lactate from lignin. Metab Eng. 2015 Mar; 28:240-247.
Score: 0.405
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Woo S, Lim HG, Norton-Baker B, Lind TM, Gladden NE, Chen Y, de Venecia C, Eng T, Johnson CW, Mukhopadhyay A, Petzold CJ, Guss AM, Beckham GT, Feist AM. Simultaneous optimization of lignocellulosic sugar catabolism via systematic laboratory evolution under complex selection pressure. Nat Commun. 2026 Jul 29; 17(1).
Score: 0.225
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Zhou N, Wilkes RA, Chen X, Teitel KP, Belgrave JA, Beckham GT, Werner AZ, Yu Y, Aristilde L. Quantitative decoding of coupled carbon and energy metabolism in Pseudomonas putida for lignin carbon utilization. Commun Biol. 2025 Aug 29; 8(1):1310.
Score: 0.211
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Wilkes RA, Miller TE, Waldbauer J, Zhou N, Zhang L, DiBiase BN, Kamat NP, Aristilde L, Beckham GT, Werner AZ. Engineered Membrane Vesicle Production via oprF or oprI Deletion Has Distinct Phenotypic Effects in Pseudomonas putida. ACS Synth Biol. 2025 07 18; 14(7):2739-2752.
Score: 0.209
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Ruhl IA, Woodworth SP, Haugen SJ, Alt HM, Beckham GT, Johnson CW. Production of Vanillin From Ferulic Acid by Pseudomonas putida KT2440 Using Metabolic Engineering and In Situ Product Recovery. Microb Biotechnol. 2025 May; 18(5):e70152.
Score: 0.207
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Werner AZ, Cordell WT, Lahive CW, Klein BC, Singer CA, Tan ECD, Ingraham MA, Ramirez KJ, Kim DH, Pedersen JN, Johnson CW, Pfleger BF, Beckham GT, Salvachúa D. Lignin conversion to ß-ketoadipic acid by Pseudomonas putida via metabolic engineering and bioprocess development. Sci Adv. 2023 09 08; 9(36):eadj0053.
Score: 0.184
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Lim HG, Rychel K, Sastry AV, Bentley GJ, Mueller J, Schindel HS, Larsen PE, Laible PD, Guss AM, Niu W, Johnson CW, Beckham GT, Feist AM, Palsson BO. Machine-learning from Pseudomonas putida KT2440 transcriptomes reveals its transcriptional regulatory network. Metab Eng. 2022 07; 72:297-310.
Score: 0.168
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Elmore JR, Dexter GN, Salvachúa D, Martinez-Baird J, Hatmaker EA, Huenemann JD, Klingeman DM, Peabody GL, Peterson DJ, Singer C, Beckham GT, Guss AM. Production of itaconic acid from alkali pretreated lignin by dynamic two stage bioconversion. Nat Commun. 2021 04 15; 12(1):2261.
Score: 0.156
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Presley GN, Werner AZ, Katahira R, Garcia DC, Haugen SJ, Ramirez KJ, Giannone RJ, Beckham GT, Michener JK. Pathway discovery and engineering for cleavage of a ß-1 lignin-derived biaryl compound. Metab Eng. 2021 05; 65:1-10.
Score: 0.155
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Wada A, Prates ÉT, Hirano R, Werner AZ, Kamimura N, Jacobson DA, Beckham GT, Masai E. Characterization of aromatic acid/proton symporters in Pseudomonas putida KT2440 toward efficient microbial conversion of lignin-related aromatics. Metab Eng. 2021 03; 64:167-179.
Score: 0.154
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Elmore JR, Dexter GN, Salvachúa D, O'Brien M, Klingeman DM, Gorday K, Michener JK, Peterson DJ, Beckham GT, Guss AM. Engineered Pseudomonas putida simultaneously catabolizes five major components of corn stover lignocellulose: Glucose, xylose, arabinose, p-coumaric acid, and acetic acid. Metab Eng. 2020 11; 62:62-71.
Score: 0.149
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Salvachúa D, Rydzak T, Auwae R, De Capite A, Black BA, Bouvier JT, Cleveland NS, Elmore JR, Huenemann JD, Katahira R, Michener WE, Peterson DJ, Rohrer H, Vardon DR, Beckham GT, Guss AM. Metabolic engineering of Pseudomonas putida for increased polyhydroxyalkanoate production from lignin. Microb Biotechnol. 2020 01; 13(1):290-298.
Score: 0.139
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Li WJ, Jayakody LN, Franden MA, Wehrmann M, Daun T, Hauer B, Blank LM, Beckham GT, Klebensberger J, Wierckx N. Laboratory evolution reveals the metabolic and regulatory basis of ethylene glycol metabolism by Pseudomonas putida KT2440. Environ Microbiol. 2019 10; 21(10):3669-3682.
Score: 0.138
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Davis K, Rover MR, Salvachúa D, Smith RG, Beckham GT, Wen Z, Brown RC, Jarboe LR. Promoting microbial utilization of phenolic substrates from bio-oil. J Ind Microbiol Biotechnol. 2019 Nov; 46(11):1531-1545.
Score: 0.138
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Omolabake S, Hofsommer DT, Mains KM, Palumbo CT, Rigo D, Werner AZ, Beckham GT, Stahl SS. Cu-Catalyzed Aerobic Oxidative C-C Cleavage in Lignin-Derived Oligomers and Biological Funneling of the Monomeric Products. Angew Chem Int Ed Engl. 2026 01 09; 65(2):e15588.
Score: 0.054
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Machovina MM, Mallinson SJB, Knott BC, Meyers AW, Garcia-Borràs M, Bu L, Gado JE, Oliver A, Schmidt GP, Hinchen DJ, Crowley MF, Johnson CW, Neidle EL, Payne CM, Houk KN, Beckham GT, McGeehan JE, DuBois JL. Enabling microbial syringol conversion through structure-guided protein engineering. Proc Natl Acad Sci U S A. 2019 07 09; 116(28):13970-13976.
Score: 0.034
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Jha RK, Narayanan N, Pandey N, Bingen JM, Kern TL, Johnson CW, Strauss CEM, Beckham GT, Hennelly SP, Dale T. Sensor-Enabled Alleviation of Product Inhibition in Chorismate Pyruvate-Lyase. ACS Synth Biol. 2019 04 19; 8(4):775-786.
Score: 0.034
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Vermaas JV, Bentley GJ, Beckham GT, Crowley MF. Membrane Permeability of Terpenoids Explored with Molecular Simulation. J Phys Chem B. 2018 11 15; 122(45):10349-10361.
Score: 0.033
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Connection Strength
The connection strength for concepts is the sum of the scores for each matching publication.
Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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