 Connection
Gregg Beckham to Lignin
This is a "connection" page, showing publications Gregg Beckham has written about Lignin.
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Connection Strength |
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11.245 |
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Bleem A, Kato R, Kellermyer ZA, Katahira R, Miyamoto M, Niinuma K, Kamimura N, Masai E, Beckham GT. Multiplexed fitness profiling by RB-TnSeq elucidates pathways for lignin-related aromatic catabolism in Sphingobium sp. SYK-6. Cell Rep. 2023 08 29; 42(8):112847.
Score: 0.841
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Dong X, Mayes HB, Morreel K, Katahira R, Li Y, Ralph J, Black BA, Beckham GT. Energy-Resolved Mass Spectrometry as a Tool for Identification of Lignin Depolymerization Products. ChemSusChem. 2023 Jan 09; 16(1):e202201441.
Score: 0.802
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Vermaas JV, Crowley MF, Beckham GT. Molecular simulation of lignin-related aromatic compound permeation through gram-negative bacterial outer membranes. J Biol Chem. 2022 12; 298(12):102627.
Score: 0.798
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Borchert AJ, Henson WR, Beckham GT. Challenges and opportunities in biological funneling of heterogeneous and toxic substrates beyond lignin. Curr Opin Biotechnol. 2022 02; 73:1-13.
Score: 0.729
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Salvach?a D, Werner AZ, Pardo I, Michalska M, Black BA, Donohoe BS, Haugen SJ, Katahira R, Notonier S, Ramirez KJ, Amore A, Purvine SO, Zink EM, Abraham PE, Giannone RJ, Poudel S, Laible PD, Hettich RL, Beckham GT. Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440. Proc Natl Acad Sci U S A. 2020 04 28; 117(17):9302-9310.
Score: 0.669
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Prates ET, Crowley MF, Skaf MS, Beckham GT. Catalytic Mechanism of Aryl-Ether Bond Cleavage in Lignin by LigF and LigG. J Phys Chem B. 2019 12 05; 123(48):10142-10151.
Score: 0.652
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Vermaas JV, Dixon RA, Chen F, Mansfield SD, Boerjan W, Ralph J, Crowley MF, Beckham GT. Passive membrane transport of lignin-related compounds. Proc Natl Acad Sci U S A. 2019 11 12; 116(46):23117-23123.
Score: 0.649
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Elder T, Carlos Del R?o J, Ralph J, Rencoret J, Kim H, Beckham GT. Radical coupling reactions of piceatannol and monolignols: A density functional theory study. Phytochemistry. 2019 Aug; 164:12-23.
Score: 0.627
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McMillan JD, Beckham GT. Thinking big: towards ideal strains and processes for large-scale aerobic biofuels production. Microb Biotechnol. 2017 01; 10(1):40-42.
Score: 0.533
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Salvach?a D, Smith H, St John PC, Mohagheghi A, Peterson DJ, Black BA, Dowe N, Beckham GT. Succinic acid production from lignocellulosic hydrolysate by Basfia succiniciproducens. Bioresour Technol. 2016 Aug; 214:558-566.
Score: 0.510
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Beckham GT, Johnson CW, Karp EM, Salvach?a D, Vardon DR. Opportunities and challenges in biological lignin valorization. Curr Opin Biotechnol. 2016 12; 42:40-53.
Score: 0.504
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Johnson CW, Beckham GT. Aromatic catabolic pathway selection for optimal production of pyruvate and lactate from lignin. Metab Eng. 2015 Mar; 28:240-247.
Score: 0.466
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Linger JG, Vardon DR, Guarnieri MT, Karp EM, Hunsinger GB, Franden MA, Johnson CW, Chupka G, Strathmann TJ, Pienkos PT, Beckham GT. Lignin valorization through integrated biological funneling and chemical catalysis. Proc Natl Acad Sci U S A. 2014 Aug 19; 111(33):12013-8.
Score: 0.451
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Payne CM, Resch MG, Chen L, Crowley MF, Himmel ME, Taylor LE, Sandgren M, St?hlberg J, Stals I, Tan Z, Beckham GT. Glycosylated linkers in multimodular lignocellulose-degrading enzymes dynamically bind to cellulose. Proc Natl Acad Sci U S A. 2013 Sep 03; 110(36):14646-51.
Score: 0.422
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Kato R, Maekawa K, Kobayashi S, Hishiyama S, Katahira R, Nambo M, Higuchi Y, Kuatsjah E, Beckham GT, Kamimura N, Masai E. Stereoinversion via Alcohol Dehydrogenases Enables Complete Catabolism of ?-1-Type Lignin-Derived Aromatic Isomers. Appl Environ Microbiol. 2023 06 28; 89(6):e0017123.
Score: 0.207
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Borchert AJ, Bleem A, Beckham GT. RB-TnSeq identifies genetic targets for improved tolerance of Pseudomonas putida towards compounds relevant to lignin conversion. Metab Eng. 2023 05; 77:208-218.
Score: 0.206
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Kuatsjah E, Zahn M, Chen X, Kato R, Hinchen DJ, Konev MO, Katahira R, Orr C, Wagner A, Zou Y, Haugen SJ, Ramirez KJ, Michener JK, Pickford AR, Kamimura N, Masai E, Houk KN, McGeehan JE, Beckham GT. Biochemical and structural characterization of a sphingomonad diarylpropane lyase for cofactorless deformylation. Proc Natl Acad Sci U S A. 2023 01 24; 120(4):e2212246120.
Score: 0.203
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Elmore JR, Dexter GN, Salvach?a D, Martinez-Baird J, Hatmaker EA, Huenemann JD, Klingeman DM, Peabody GL, Peterson DJ, Singer C, Beckham GT, Guss AM. Production of itaconic acid from alkali pretreated lignin by dynamic two stage bioconversion. Nat Commun. 2021 04 15; 12(1):2261.
Score: 0.180
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Notonier S, Werner AZ, Kuatsjah E, Dumalo L, Abraham PE, Hatmaker EA, Hoyt CB, Amore A, Ramirez KJ, Woodworth SP, Klingeman DM, Giannone RJ, Guss AM, Hettich RL, Eltis LD, Johnson CW, Beckham GT. Metabolism of syringyl lignin-derived compounds in Pseudomonas putida enables convergent production of 2-pyrone-4,6-dicarboxylic acid. Metab Eng. 2021 05; 65:111-122.
Score: 0.179
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Fetherolf MM, Levy-Booth DJ, Navas LE, Liu J, Grigg JC, Wilson A, Katahira R, Beckham GT, Mohn WW, Eltis LD. Characterization of alkylguaiacol-degrading cytochromes P450 for the biocatalytic valorization of lignin. Proc Natl Acad Sci U S A. 2020 10 13; 117(41):25771-25778.
Score: 0.173
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Machovina MM, Mallinson SJB, Knott BC, Meyers AW, Garcia-Borr?s M, Bu L, Gado JE, Oliver A, Schmidt GP, Hinchen DJ, Crowley MF, Johnson CW, Neidle EL, Payne CM, Houk KN, Beckham GT, McGeehan JE, DuBois JL. Enabling microbial syringol conversion through structure-guided protein engineering. Proc Natl Acad Sci U S A. 2019 07 09; 116(28):13970-13976.
Score: 0.158
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Anderson EM, Stone ML, Katahira R, Reed M, Muchero W, Ramirez KJ, Beckham GT, Rom?n-Leshkov Y. Differences in S/G ratio in natural poplar variants do not predict catalytic depolymerization monomer yields. Nat Commun. 2019 05 02; 10(1):2033.
Score: 0.157
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Mallinson SJB, Machovina MM, Silveira RL, Garcia-Borr?s M, Gallup N, Johnson CW, Allen MD, Skaf MS, Crowley MF, Neidle EL, Houk KN, Beckham GT, DuBois JL, McGeehan JE. A promiscuous cytochrome P450 aromatic O-demethylase for lignin bioconversion. Nat Commun. 2018 06 27; 9(1):2487.
Score: 0.148
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Elder T, Berstis L, Beckham GT, Crowley MF. Coupling and Reactions of 5-Hydroxyconiferyl Alcohol in Lignin Formation. J Agric Food Chem. 2016 Jun 15; 64(23):4742-50.
Score: 0.128
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Cragg SM, Beckham GT, Bruce NC, Bugg TD, Distel DL, Dupree P, Etxabe AG, Goodell BS, Jellison J, McGeehan JE, McQueen-Mason SJ, Schnorr K, Walton PH, Watts JE, Zimmer M. Lignocellulose degradation mechanisms across the Tree of Life. Curr Opin Chem Biol. 2015 Dec; 29:108-19.
Score: 0.123
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Ragauskas AJ, Beckham GT, Biddy MJ, Chandra R, Chen F, Davis MF, Davison BH, Dixon RA, Gilna P, Keller M, Langan P, Naskar AK, Saddler JN, Tschaplinski TJ, Tuskan GA, Wyman CE. Lignin valorization: improving lignin processing in the biorefinery. Science. 2014 May 16; 344(6185):1246843.
Score: 0.111
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Chen L, Drake MR, Resch MG, Greene ER, Himmel ME, Chaffey PK, Beckham GT, Tan Z. Specificity of O-glycosylation in enhancing the stability and cellulose binding affinity of Family 1 carbohydrate-binding modules. Proc Natl Acad Sci U S A. 2014 May 27; 111(21):7612-7.
Score: 0.111
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Nordwald EM, Brunecky R, Himmel ME, Beckham GT, Kaar JL. Charge engineering of cellulases improves ionic liquid tolerance and reduces lignin inhibition. Biotechnol Bioeng. 2014 Aug; 111(8):1541-9.
Score: 0.110
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Chundawat SP, Beckham GT, Himmel ME, Dale BE. Deconstruction of lignocellulosic biomass to fuels and chemicals. Annu Rev Chem Biomol Eng. 2011; 2:121-45.
Score: 0.088
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Werner AZ, Cordell WT, Lahive CW, Klein BC, Singer CA, Tan ECD, Ingraham MA, Ramirez KJ, Kim DH, Pedersen JN, Johnson CW, Pfleger BF, Beckham GT, Salvach?a D. Lignin conversion to ?-ketoadipic acid by Pseudomonas putida via metabolic engineering and bioprocess development. Sci Adv. 2023 09 08; 9(36):eadj0053.
Score: 0.053
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Kuatsjah E, Chan ACK, Katahira R, Haugen SJ, Beckham GT, Murphy MEP, Eltis LD. Structural and functional analysis of lignostilbene dioxygenases from Sphingobium sp. SYK-6. J Biol Chem. 2021 Jan-Jun; 296:100758.
Score: 0.045
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Presley GN, Werner AZ, Katahira R, Garcia DC, Haugen SJ, Ramirez KJ, Giannone RJ, Beckham GT, Michener JK. Pathway discovery and engineering for cleavage of a ?-1 lignin-derived biaryl compound. Metab Eng. 2021 05; 65:1-10.
Score: 0.044
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Wada A, Prates ?T, Hirano R, Werner AZ, Kamimura N, Jacobson DA, Beckham GT, Masai E. Characterization of aromatic acid/proton symporters in Pseudomonas putida KT2440 toward efficient microbial conversion of lignin-related aromatics. Metab Eng. 2021 03; 64:167-179.
Score: 0.044
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Elmore JR, Dexter GN, Salvach?a D, O'Brien M, Klingeman DM, Gorday K, Michener JK, Peterson DJ, Beckham GT, Guss AM. Engineered Pseudomonas putida simultaneously catabolizes five major components of corn stover lignocellulose: Glucose, xylose, arabinose, p-coumaric acid, and acetic acid. Metab Eng. 2020 11; 62:62-71.
Score: 0.043
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Salvach?a D, Rydzak T, Auwae R, De Capite A, Black BA, Bouvier JT, Cleveland NS, Elmore JR, Huenemann JD, Katahira R, Michener WE, Peterson DJ, Rohrer H, Vardon DR, Beckham GT, Guss AM. Metabolic engineering of Pseudomonas putida for increased polyhydroxyalkanoate production from lignin. Microb Biotechnol. 2020 01; 13(1):290-298.
Score: 0.040
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Davis K, Rover MR, Salvach?a D, Smith RG, Beckham GT, Wen Z, Brown RC, Jarboe LR. Promoting microbial utilization of phenolic substrates from bio-oil. J Ind Microbiol Biotechnol. 2019 Nov; 46(11):1531-1545.
Score: 0.040
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Connection Strength
The connection strength for concepts is the sum of the scores for each matching publication.
Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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