 Connection
Robert Batey to Base Sequence
This is a "connection" page, showing publications Robert Batey has written about Base Sequence.
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Connection Strength |
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2.646 |
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Hansen LN, Kletzien OA, Urquijo M, Schwanz LT, Batey RT. Context-dependence of T-loop Mediated Long-range RNA Tertiary Interactions. J Mol Biol. 2023 05 15; 435(10):168070.
Score: 0.159
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Holmes ZE, Hamilton DJ, Hwang T, Parsonnet NV, Rinn JL, Wuttke DS, Batey RT. The Sox2 transcription factor binds RNA. Nat Commun. 2020 04 14; 11(1):1805.
Score: 0.130
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Matyjasik MM, Batey RT. Structural basis for 2'-deoxyguanosine recognition by the 2'-dG-II class of riboswitches. Nucleic Acids Res. 2019 11 18; 47(20):10931-10941.
Score: 0.126
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Polaski JT, Kletzien OA, Drogalis LK, Batey RT. A functional genetic screen reveals sequence preferences within a key tertiary interaction in cobalamin riboswitches required for ligand selectivity. Nucleic Acids Res. 2018 09 28; 46(17):9094-9105.
Score: 0.117
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Vicens Q, Mondrag?n E, Reyes FE, Coish P, Aristoff P, Berman J, Kaur H, Kells KW, Wickens P, Wilson J, Gadwood RC, Schostarez HJ, Suto RK, Blount KF, Batey RT. Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch. ACS Chem Biol. 2018 10 19; 13(10):2908-2919.
Score: 0.116
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Polaski JT, Webster SM, Johnson JE, Batey RT. Cobalamin riboswitches exhibit a broad range of ability to discriminate between methylcobalamin and adenosylcobalamin. J Biol Chem. 2017 07 14; 292(28):11650-11658.
Score: 0.106
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Polaski JT, Holmstrom ED, Nesbitt DJ, Batey RT. Mechanistic Insights into Cofactor-Dependent Coupling of RNA Folding and mRNA Transcription/Translation by a Cobalamin Riboswitch. Cell Rep. 2016 05 03; 15(5):1100-1110.
Score: 0.098
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Wostenberg C, Ceres P, Polaski JT, Batey RT. A Highly Coupled Network of Tertiary Interactions in the SAM-I Riboswitch and Their Role in Regulatory Tuning. J Mol Biol. 2015 Nov 06; 427(22):3473-3490.
Score: 0.094
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Trausch JJ, Marcano-Vel?zquez JG, Matyjasik MM, Batey RT. Metal Ion-Mediated Nucleobase Recognition by the ZTP Riboswitch. Chem Biol. 2015 Jul 23; 22(7):829-37.
Score: 0.093
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Marcano-Vel?zquez JG, Batey RT. Structure-guided mutational analysis of gene regulation by the Bacillus subtilis pbuE adenine-responsive riboswitch in a cellular context. J Biol Chem. 2015 Feb 13; 290(7):4464-75.
Score: 0.090
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Trausch JJ, Xu Z, Edwards AL, Reyes FE, Ross PE, Knight R, Batey RT. Structural basis for diversity in the SAM clan of riboswitches. Proc Natl Acad Sci U S A. 2014 May 06; 111(18):6624-9.
Score: 0.086
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Ceres P, Trausch JJ, Batey RT. Engineering modular 'ON' RNA switches using biological components. Nucleic Acids Res. 2013 Dec; 41(22):10449-61.
Score: 0.082
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Stoddard CD, Widmann J, Trausch JJ, Marcano-Vel?zquez JG, Knight R, Batey RT. Nucleotides adjacent to the ligand-binding pocket are linked to activity tuning in the purine riboswitch. J Mol Biol. 2013 May 27; 425(10):1596-611.
Score: 0.079
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Johnson JE, Reyes FE, Polaski JT, Batey RT. B12 cofactors directly stabilize an mRNA regulatory switch. Nature. 2012 Dec 06; 492(7427):133-7.
Score: 0.077
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Batey RT. Structure and mechanism of purine-binding riboswitches. Q Rev Biophys. 2012 Aug; 45(3):345-81.
Score: 0.076
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Trausch JJ, Ceres P, Reyes FE, Batey RT. The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer. Structure. 2011 Oct 12; 19(10):1413-23.
Score: 0.071
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Vicens Q, Mondrag?n E, Batey RT. Molecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by conformational selection. Nucleic Acids Res. 2011 Oct; 39(19):8586-98.
Score: 0.071
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Batey RT. Recognition of S-adenosylmethionine by riboswitches. Wiley Interdiscip Rev RNA. 2011 Mar-Apr; 2(2):299-311.
Score: 0.068
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Vicens Q, Gooding AR, Duarte LF, Batey RT. Preparation of group I introns for biochemical studies and crystallization assays by native affinity purification. PLoS One. 2009 Aug 27; 4(8):e6740.
Score: 0.062
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Garst AD, Batey RT. A switch in time: detailing the life of a riboswitch. Biochim Biophys Acta. 2009 Sep-Oct; 1789(9-10):584-91.
Score: 0.062
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Gilbert SD, Reyes FE, Edwards AL, Batey RT. Adaptive ligand binding by the purine riboswitch in the recognition of guanine and adenine analogs. Structure. 2009 Jun 10; 17(6):857-68.
Score: 0.061
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Gilbert SD, Batey RT. Monitoring RNA-ligand interactions using isothermal titration calorimetry. Methods Mol Biol. 2009; 540:97-114.
Score: 0.059
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Stoddard CD, Gilbert SD, Batey RT. Ligand-dependent folding of the three-way junction in the purine riboswitch. RNA. 2008 Apr; 14(4):675-84.
Score: 0.056
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Gilbert SD, Rambo RP, Van Tyne D, Batey RT. Structure of the SAM-II riboswitch bound to S-adenosylmethionine. Nat Struct Mol Biol. 2008 Feb; 15(2):177-82.
Score: 0.056
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Gilbert SD, Love CE, Edwards AL, Batey RT. Mutational analysis of the purine riboswitch aptamer domain. Biochemistry. 2007 Nov 20; 46(46):13297-309.
Score: 0.055
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Batey RT, Kieft JS. Improved native affinity purification of RNA. RNA. 2007 Aug; 13(8):1384-9.
Score: 0.053
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Hardin JW, Batey RT. The bipartite architecture of the sRNA in an archaeal box C/D complex is a primary determinant of specificity. Nucleic Acids Res. 2006; 34(18):5039-51.
Score: 0.051
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Montange RK, Batey RT. Structure of the S-adenosylmethionine riboswitch regulatory mRNA element. Nature. 2006 Jun 29; 441(7097):1172-5.
Score: 0.050
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Gilbert SD, Montange RK, Stoddard CD, Batey RT. Structural studies of the purine and SAM binding riboswitches. Cold Spring Harb Symp Quant Biol. 2006; 71:259-68.
Score: 0.048
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Batey RT, Gilbert SD, Montange RK. Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine. Nature. 2004 Nov 18; 432(7015):411-5.
Score: 0.045
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Kieft JS, Batey RT. A general method for rapid and nondenaturing purification of RNAs. RNA. 2004 Jun; 10(6):988-95.
Score: 0.043
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Miao Z, Adamiak RW, Antczak M, Boniecki MJ, Bujnicki J, Chen SJ, Cheng CY, Cheng Y, Chou FC, Das R, Dokholyan NV, Ding F, Geniesse C, Jiang Y, Joshi A, Krokhotin A, Magnus M, Mailhot O, Major F, Mann TH, Piatkowski P, Pluta R, Popenda M, Sarzynska J, Sun L, Szachniuk M, Tian S, Wang J, Wang J, Watkins AM, Wiedemann J, Xiao Y, Xu X, Yesselman JD, Zhang D, Zhang Y, Zhang Z, Zhao C, Zhao P, Zhou Y, Zok T, Zyla A, Ren A, Batey RT, Golden BL, Huang L, Lilley DM, Liu Y, Patel DJ, Westhof E. RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers. RNA. 2020 08; 26(8):982-995.
Score: 0.033
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Parsonnet NV, Lammer NC, Holmes ZE, Batey RT, Wuttke DS. The glucocorticoid receptor DNA-binding domain recognizes RNA hairpin structures with high affinity. Nucleic Acids Res. 2019 09 05; 47(15):8180-8192.
Score: 0.031
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Batey RT, Williamson JR. Effects of polyvalent cations on the folding of an rRNA three-way junction and binding of ribosomal protein S15. RNA. 1998 Aug; 4(8):984-97.
Score: 0.029
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Batey RT, Doudna JA. The parallel universe of RNA folding. Nat Struct Biol. 1998 May; 5(5):337-40.
Score: 0.028
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Batey RT, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site. J Mol Biol. 1996 Aug 30; 261(4):536-49.
Score: 0.025
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Batey RT, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition. J Mol Biol. 1996 Aug 30; 261(4):550-67.
Score: 0.025
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Batey RT, Battiste JL, Williamson JR. Preparation of isotopically enriched RNAs for heteronuclear NMR. Methods Enzymol. 1995; 261:300-22.
Score: 0.022
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Pang G, Buret A, O'Loughlin E, Smith A, Batey R, Clancy R. Immunologic, functional, and morphological characterization of three new human small intestinal epithelial cell lines. Gastroenterology. 1996 Jul; 111(1):8-18.
Score: 0.006
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Pang G, Couch L, Batey R, Clancy R, Cripps A. GM-CSF, IL-1 alpha, IL-1 beta, IL-6, IL-8, IL-10, ICAM-1 and VCAM-1 gene expression and cytokine production in human duodenal fibroblasts stimulated with lipopolysaccharide, IL-1 alpha and TNF-alpha. Clin Exp Immunol. 1994 Jun; 96(3):437-43.
Score: 0.005
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Connection Strength
The connection strength for concepts is the sum of the scores for each matching publication.
Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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