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Janani Ravi

TitleAssistant Professor
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM-BIOMED Informatics Gen Ops

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Penaranda C, Brenner EP, Clatworthy AE, Cosimi LA, Ravi J, Hung DT. Genomic comparison and phenotypic characterization of Pseudomonas aeruginosa isolates across environmental and diverse clinical isolation sites. mSystems. 2026 Mar 24; 11(3):e0136225. PMID: 41641989.
      View in: PubMed
    2. Ghosh A, Brenner EP, Vang CK, Wolfe EP, Boyer EA, Lesiyon RL, Manpearl KR, Sridhar V, Burke JT, Krol JD, Bilodeaux JM, Ravi J. From sequence to signature: Machine learning uncovers multiscale feature landscapes that predict AMR across ESKAPE pathogens. bioRxiv. 2025 Oct 20. PMID: 41279520.
      View in: PubMed
    3. Penaranda C, Brenner EP, Clatworthy AE, Cosimi LA, Ravi J, Hung DT. Mapping genetic and phenotypic diversity of Pseudomonas aeruginosa across clinical and environmental isolation sites. bioRxiv. 2025 Sep 22. PMID: 41040319.
      View in: PubMed
    4. Samart K, Buskirk L, Tonielli A, Krishnan A, Ravi J. Integrative transcriptome-based drug repurposing in tuberculosis. bioRxiv. 2025 Jun 02. PMID: 40501823.
      View in: PubMed
    5. Ghosh A, Vang CK, Brenner EP, Ravi J. Unlocking antimicrobial resistance with multiomics and machine learning. Trends Microbiol. 2025 Oct; 33(10):1048-1051. PMID: 40425396.
      View in: PubMed
    6. Ravi J, Samart K, Zwolak J. Modeling the START transition in the budding yeast cell cycle. PLoS Comput Biol. 2024 Aug; 20(8):e1012048. PMID: 39093881.
      View in: PubMed
    7. Ravi J, Anantharaman V, Chen SZ, Brenner EP, Datta P, Aravind L, Gennaro ML. The phage shock protein (PSP) envelope stress response: discovery of novel partners and evolutionary history. mSystems. 2024 Jun 18; 9(6):e0084723. PMID: 38809013.
      View in: PubMed
    8. Lensmire JM, Wischer MR, Kraemer-Zimpel C, Kies PJ, Sosinski L, Ensink E, Dodson JP, Shook JC, Delekta PC, Cooper CC, Havlichek DH, Mulks MH, Lunt SY, Ravi J, Hammer ND. The glutathione import system satisfies the Staphylococcus aureus nutrient sulfur requirement and promotes interspecies competition. PLoS Genet. 2023 07; 19(7):e1010834. PMID: 37418503.
      View in: PubMed
    9. Blaine HC, Burke JT, Ravi J, Stallings CL. DciA Helicase Operators Exhibit Diversity across Bacterial Phyla. J Bacteriol. 2022 08 16; 204(8):e0016322. PMID: 35880876.
      View in: PubMed
    10. Joo R, Sánchez-Tapia A, Mortara S, Bellini Saibene Y, Turner H, Hug Peter D, Morandeira NS, Bannert M, Almazrouq B, Hare E, Ación L, Narváez-Gómez JP, Alfaro Córdoba M, Marini F, Giordano R, Canelón S, Ebou A, Upadhya AR, Chávez J, Ravi J. Ten simple rules to host an inclusive conference. PLoS Comput Biol. 2022 07; 18(7):e1010164. PMID: 35862309.
      View in: PubMed
    11. Hsueh BY, Severin GB, Elg CA, Waldron EJ, Kant A, Wessel AJ, Dover JA, Rhoades CR, Ridenhour BJ, Parent KN, Neiditch MB, Ravi J, Top EM, Waters CM. Phage defence by deaminase-mediated depletion of deoxynucleotides in bacteria. Nat Microbiol. 2022 08; 7(8):1210-1220. PMID: 35817890.
      View in: PubMed
    12. Samart K, Tuyishime P, Krishnan A, Ravi J. Reconciling multiple connectivity scores for drug repurposing. Brief Bioinform. 2021 11 05; 22(6). PMID: 34013329.
      View in: PubMed
    13. Ravi J, Fioravanti A. S-layers: The Proteinaceous Multifunctional Armors of Gram-Positive Pathogens. Front Microbiol. 2021; 12:663468. PMID: 33889148.
      View in: PubMed
    14. Lensmire JM, Dodson JP, Hsueh BY, Wischer MR, Delekta PC, Shook JC, Ottosen EN, Kies PJ, Ravi J, Hammer ND. The Staphylococcus aureus Cystine Transporters TcyABC and TcyP Facilitate Nutrient Sulfur Acquisition during Infection. Infect Immun. 2020 02 20; 88(3). PMID: 31843961.
      View in: PubMed
    15. Ravi J, Anantharaman V, Aravind L, Gennaro ML. Variations on a theme: evolution of the phage-shock-protein system in Actinobacteria. Antonie Van Leeuwenhoek. 2018 May; 111(5):753-760. PMID: 29488183.
      View in: PubMed
    16. Chauhan R, Ravi J, Datta P, Chen T, Schnappinger D, Bassler KE, Balázsi G, Gennaro ML. Reconstruction and topological characterization of the sigma factor regulatory network of Mycobacterium tuberculosis. Nat Commun. 2016 Mar 31; 7:11062. PMID: 27029515.
      View in: PubMed
    17. Datta P, Ravi J, Guerrini V, Chauhan R, Neiditch MB, Shell SS, Fortune SM, Hancioglu B, Igoshin OA, Gennaro ML. The Psp system of Mycobacterium tuberculosis integrates envelope stress-sensing and envelope-preserving functions. Mol Microbiol. 2015 Aug; 97(3):408-22. PMID: 25899163.
      View in: PubMed
    18. Salamon H, Bruiners N, Lakehal K, Shi L, Ravi J, Yamaguchi KD, Pine R, Gennaro ML. Cutting edge: Vitamin D regulates lipid metabolism in Mycobacterium tuberculosis infection. J Immunol. 2014 Jul 01; 193(1):30-34. PMID: 24899504.
      View in: PubMed
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