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Search Results to John Lute Markley

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Search Results

Markley, John

One or more keywords matched the following items that are connected to Markley, John

Item Type	Name
Concept	Models, Molecular
Academic Article	The AUDANA algorithm for automated protein 3D structure determination from NMR NOE data.
Academic Article	Integrative NMR for biomolecular research.
Academic Article	Molecular insights into the recognition of N-terminal histone modifications by the BRPF1 bromodomain.
Academic Article	Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum.
Academic Article	PINE-SPARKY.2 for automated NMR-based protein structure research.
Academic Article	NMRFAM-SDF: a protein structure determination framework.
Academic Article	Quantum chemical calculations on structural models of the catalytic site of chymotrypsin: comparison of calculated results with experimental data from NMR spectroscopy.
Academic Article	Solution studies of staphylococcal nuclease H124L. 2. 1H, 13C, and 15N chemical shift assignments for the unligated enzyme and analysis of chemical shift changes that accompany formation of the nuclease-thymidine 3',5'-bisphosphate-calcium ternary complex.
Academic Article	Hydrogen-1, carbon-13, and nitrogen-15 NMR spectroscopy of Anabaena 7120 flavodoxin: assignment of beta-sheet and flavin binding site resonances and analysis of protein-flavin interactions.
Academic Article	NMR chemical shift mapping of the binding site of a protein proteinase inhibitor: changes in the (1)H, (13)C and (15)N NMR chemical shifts of turkey ovomucoid third domain upon binding to bovine chymotrypsin A(alpha).
Academic Article	Collagen stability: insights from NMR spectroscopic and hybrid density functional computational investigations of the effect of electronegative substituents on prolyl ring conformations.
Academic Article	Human Mitochondrial Ferredoxin 1 (FDX1) and Ferredoxin 2 (FDX2) Both Bind Cysteine Desulfurase and Donate Electrons for Iron-Sulfur Cluster Biosynthesis.
Academic Article	Three-dimensional structure and determinants of stability of the iron-sulfur cluster scaffold protein IscU from Escherichia coli.
Academic Article	Solution structure and backbone dynamics of component IV Glycera dibranchiata monomeric hemoglobin-CO.
Academic Article	Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.
Academic Article	Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.
Academic Article	ISCU(M108I) and ISCU(D39V) Differ from Wild-Type ISCU in Their Failure To Form Cysteine Desulfurase Complexes Containing Both Frataxin and Ferredoxin.
Academic Article	Solution structure of the N-domain of Wilson disease protein: distinct nucleotide-binding environment and effects of disease mutations.
Academic Article	Macromolecular structure determination by NMR spectroscopy.
Academic Article	HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections.
Academic Article	Lipid binding ridge on loops 2 and 3 of the C2A domain of synaptotagmin I as revealed by NMR spectroscopy.
Academic Article	Conserved Lipid and Small-Molecule Modulation of COQ8 Reveals Regulation of the Ancient Kinase-like UbiB Family.
Academic Article	OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.
Academic Article	Disordered form of the scaffold protein IscU is the substrate for iron-sulfur cluster assembly on cysteine desulfurase.
Academic Article	Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics.
Academic Article	PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models.
Academic Article	Hyperfine-shifted 13C resonance assignments in an iron-sulfur protein with quantum chemical verification: aliphatic C-H···S 3-center-4-electron interactions.
Academic Article	Changes in hydrogen-bond strengths explain reduction potentials in 10 rubredoxin variants.
Academic Article	Structure-function relationships of brazzein variants with altered interactions with the human sweet taste receptor.
Academic Article	Solution structure of YggX: a prokaryotic protein involved in Fe(II) trafficking.
Academic Article	Three-dimensional structure of the water-insoluble protein crambin in dodecylphosphocholine micelles and its minimal solvent-exposed surface.
Academic Article	Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state.
Academic Article	Solution structure of a single-domain thiosulfate sulfurtransferase from Arabidopsis thaliana.
Academic Article	Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.
Academic Article	Temperature-dependent conformational change affecting Tyr11 and sweetness loops of brazzein.
Academic Article	The Complex Energy Landscape of the Protein IscU.
Academic Article	Metamorphic protein IscU alternates conformations in the course of its role as the scaffold protein for iron-sulfur cluster biosynthesis and delivery.
Academic Article	Oligomerization of the EK18 mutant of the trp repressor of Escherichia coli as observed by NMR spectroscopy.
Academic Article	Structural/Functional Properties of Human NFU1, an Intermediate [4Fe-4S] Carrier in Human Mitochondrial Iron-Sulfur Cluster Biogenesis.
Academic Article	Two-dimensional magnetization exchange spectroscopy of Anabaena 7120 ferredoxin. Nuclear Overhauser effect and electron self-exchange cross peaks from amino acid residues surrounding the 2Fe-2S* cluster.
Academic Article	Structural basis for RNA recognition by a type II poly(A)-binding protein.
Academic Article	The specialized Hsp70 (HscA) interdomain linker binds to its nucleotide-binding domain and stimulates ATP hydrolysis in both cis and trans configurations.
Academic Article	Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein.
Academic Article	Ligand-specific structural changes in the vitamin D receptor in solution.
Academic Article	Protonation-state dependence of hydrogen bond strengths and exchange rates in a serine protease catalytic triad: bovine chymotrypsinogen A.
Academic Article	The Protein Data Bank Archive.
Academic Article	Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering.
Academic Article	Interactions between metal-binding domains modulate intracellular targeting of Cu(I)-ATPase ATP7B, as revealed by nanobody binding.
Academic Article	Key amino acid residues involved in multi-point binding interactions between brazzein, a sweet protein, and the T1R2-T1R3 human sweet receptor.
Academic Article	Sweetness determinant sites of brazzein, a small, heat-stable, sweet-tasting protein.
Academic Article	Solution structure of a small protein containing a fluorinated side chain in the core.
Academic Article	RNA-PAIRS: RNA probabilistic assignment of imino resonance shifts.
Academic Article	Solution Structural Studies of GTP:Adenosylcobinamide-Phosphateguanylyl Transferase (CobY) from Methanocaldococcus jannaschii.
Academic Article	Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.
Academic Article	Structure of the insect cytokine peptide plasmatocyte-spreading peptide 1 from Pseudoplusia includens.
Academic Article	Electron-nuclear interactions in two prototypical [2Fe-2S] proteins: selective (chiral) deuteration and analysis of (1)H and (2)H NMR signals from the alpha and beta hydrogens of cysteinyl residues that ligate the iron in the active sites of human ferredoxin and Anabaena 7120 vegetative ferredoxin.

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