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Search Results to Daniel N Frank

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Item TypeName
Academic Article Architecture of the U5 small nuclear RNA.
Academic Article New insight into RNase P RNA structure from comparative analysis of the archaeal RNA.
Academic Article Isolation and characterization of a black-pigmented Corynebacterium sp. from a woman with spontaneous abortion.
Academic Article In vitro selection for altered divalent metal specificity in the RNase P RNA.
Academic Article Culture-independent molecular analysis of microbial constituents of the healthy human outer ear.
Academic Article Participation of the 3'-CCA of tRNA in the binding of catalytic Mg2+ ions by ribonuclease P.
Academic Article Leptotrichia amnionii sp. nov., a novel bacterium isolated from the amniotic fluid of a woman after intrauterine fetal demise.
Academic Article Isolation of a fastidious Bergeyella species associated with cellulitis after a cat bite and a phylogenetic comparison with Bergeyella zoohelcum strains.
Academic Article Use of specific rRNA oligonucleotide probes for microscopic detection of Mycobacterium avium complex organisms in tissue.
Academic Article Culture-independent analysis of indomethacin-induced alterations in the rat gastrointestinal microbiota.
Academic Article Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases.
Academic Article XplorSeq: a software environment for integrated management and phylogenetic analysis of metagenomic sequence data.
Academic Article Culture-independent microbiological analysis of foley urinary catheter biofilms.
Academic Article Pathogen-specific antibodies: codependent no longer.
Academic Article The human nasal microbiota and Staphylococcus aureus carriage.
Academic Article Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases.
Academic Article Growth and Development Symposium: promoting healthier humans through healthier livestock: animal agriculture enters the metagenomics era.
Academic Article Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA.
Academic Article Update on bacterial detection methods in chronic rhinosinusitis: implications for clinicians and research scientists.
Academic Article Altered vaginal microbiota are associated with perinatal mother-to-child transmission of HIV in African women from Burkina Faso.
Academic Article Of microbes and meals: the health consequences of dietary endotoxemia.
Academic Article Phylogenetic analysis of the structure of RNase MRP RNA in yeasts.
Academic Article Generation and analysis of a mouse intestinal metatranscriptome through Illumina based RNA-sequencing.
Academic Article Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition.
Academic Article Host genes related to paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition.
Academic Article The role of the intestinal microbiota in type 1 diabetes.
Academic Article Rational design of self-cleaving pre-tRNA-ribonuclease P RNA conjugates.
Academic Article In vitro selection of RNase P RNA reveals optimized catalytic activity in a highly conserved structural domain.
Academic Article Ribonuclease P: unity and diversity in a tRNA processing ribozyme.
Academic Article Corynebacterium nigricans sp. nov.: proposed name for a black-pigmented Corynebacterium species recovered from the human female urogenital tract.
Academic Article Lactobacillus rhamnosus GG bacteremia associated with probiotic use in a child with short gut syndrome.
Academic Article Use of specific rRNA oligonucleotide probes for microscopic detection of Mycobacterium tuberculosis in culture and tissue specimens.
Academic Article Eucaryotic diversity in a hypersaline microbial mat.
Academic Article Pondering probiotics.
Academic Article Microbial diversity in chronic open wounds.
Academic Article Opportunistic pathogens enriched in showerhead biofilms.
Academic Article Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases.
Academic Article BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing.
Academic Article Gastrointestinal microbiology enters the metagenomics era.
Academic Article Mycobacterium avium subspecies paratuberculosis and Crohn's disease.
Academic Article Microbiome complexity and Staphylococcus aureus in chronic rhinosinusitis.
Academic Article Prevalence and abundance of Staphylococcus aureus in the middle meatus of patients with chronic rhinosinusitis, nasal polyps, and asthma.
Academic Article Culture-independent analysis of aerosol microbiology in a metropolitan subway system.
Academic Article Investigating the biological and clinical significance of human dysbioses.
Academic Article Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts.
Academic Article Lactation and neonatal nutrition: defining and refining the critical questions.
Academic Article Prevention of virus-induced type 1 diabetes with antibiotic therapy.
Academic Article Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity.
Academic Article Comparative analysis of microbiome measurement platforms using latent variable structural equation modeling.
Concept HIV Seropositivity
Concept Sequence Analysis, RNA
Concept Oxidative Stress
Concept Sinusitis
Concept Gonadal Steroid Hormones
Concept Ribonucleoprotein, U5 Small Nuclear
Concept Metagenome
Concept Respiratory Sounds
Concept Short Bowel Syndrome
Concept Mycobacterium avium subsp. paratuberculosis
Concept Sepsis
Concept Smoking
Concept Genes, Bacterial
Concept Longitudinal Studies
Concept DNA, Recombinant
Concept Sulfamethoxazole
Concept Microscopy, Electron, Scanning
Concept Soil Microbiology
Concept Saliva
Concept Genes, Lethal
Concept Disease Models, Animal
Concept Staphylococcus aureus
Concept Sequence Analysis, DNA
Concept Sulfasalazine
Concept RNA, Small Nuclear
Concept Dextran Sulfate
Concept Nutrition Assessment
Concept Software
Concept Genes, Synthetic
Concept Shock, Hemorrhagic
Concept Multigene Family
Concept Hematopoietic Stem Cell Transplantation
Concept Staphylococcal Infections
Concept Rats, Inbred Strains
Concept Genes, rRNA
Concept Maternal Nutritional Physiological Phenomena
Concept Staphylococcus
Concept Fatigue Syndrome, Chronic
Concept Cross-Over Studies
Concept Symbiosis
Concept Nose Diseases
Concept Mutagenesis, Site-Directed
Concept Pregnancy Trimester, Second
Concept Genome, Bacterial
Concept Paranasal Sinuses
Concept Polymorphism, Single Nucleotide
Concept Disease Progression
Concept Influenza A Virus, H1N1 Subtype
Concept Sensitivity and Specificity
Concept Information Storage and Retrieval
Concept Infectious Disease Transmission, Vertical
Concept Catalytic Domain
Concept Systole
Concept Syndecan-1
Concept Hemostasis, Surgical
Concept Sequence Alignment
Concept Salmonella Infections
Concept Binding Sites
Concept Infant Nutritional Physiological Phenomena
Concept Saccharomyces cerevisiae Proteins
Concept Sanitary Engineering
Concept Staphylococcus epidermidis
Concept Disease Susceptibility
Concept Database Management Systems
Concept Genes
Concept Chronic Disease
Concept Hydrogen Sulfide
Concept Amino Acid Sequence
Concept Suppression, Genetic
Concept Saccharomyces cerevisiae
Concept Cohort Studies
Concept Seasons
Concept Acute Disease
Concept Crohn Disease
Concept Prenatal Nutritional Physiological Phenomena
Concept Gene Library
Concept Case-Control Studies
Concept Microbial Sensitivity Tests
Concept Mice, Inbred Strains
Concept Sputum
Concept Spondylarthritis
Concept Prospective Studies
Concept Cross-Sectional Studies
Concept Sequence Homology, Amino Acid
Concept Spleen
Concept Stress, Psychological
Concept Geologic Sediments
Concept Sequence Homology, Nucleic Acid
Concept In Situ Hybridization
Concept Substrate Specificity
Concept Inflammatory Bowel Diseases
Concept Systemic Inflammatory Response Syndrome
Concept Bites and Stings
Concept RNA Splicing
Concept Serine Endopeptidases
Concept Oligonucleotide Array Sequence Analysis
Concept Polycystic Ovary Syndrome
Concept Streptococcus pneumoniae
Concept Anti-Inflammatory Agents, Non-Steroidal
Concept T-Lymphocyte Subsets
Concept Dietary Supplements
Concept Genome
Concept Bacillus subtilis
Concept Spectrometry, Mass, Electrospray Ionization
Concept Ethmoid Sinus
Concept Abortion, Spontaneous
Concept Ribosome Subunits, Small, Eukaryotic
Concept Cardiovascular Diseases
Concept Statistics, Nonparametric
Concept snRNP Core Proteins
Concept Simian Acquired Immunodeficiency Syndrome
Concept Genes, Fungal
Concept Rats, Sprague-Dawley
Concept United States
Concept Sex Characteristics
Concept Sulfadoxine
Concept Structure-Activity Relationship
Concept In Situ Hybridization, Fluorescence
Concept Methicillin-Resistant Staphylococcus aureus
Concept Metabolic Syndrome
Concept Streptococcus mitis
Concept Carrier State
Concept Skin
Concept Surgical Wound Infection
Concept Gastrointestinal Diseases
Concept Base Sequence
Concept Follow-Up Studies
Concept Systems Integration
Concept Salmonella typhimurium
Concept Siblings
Concept Nutritional Status
Concept Molecular Sequence Data
Concept Graft vs Host Disease
Concept Organ Specificity
Concept Nod2 Signaling Adaptor Protein
Concept Retrospective Studies
Concept Digestive System Surgical Procedures
Concept Sequence Deletion
Concept Models, Statistical
Concept Consensus Sequence
Concept Ribonucleoproteins, Small Nuclear
Concept Species Specificity
Concept Signal Transduction
Concept Nucleic Acid Conformation
Concept Bile Acids and Salts
Concept Intestine, Small
Concept Severity of Illness Index
Concept Simian Immunodeficiency Virus
Concept Bacterial Shedding
Concept Metabolic Diseases
Academic Article Probiotic administration reduces mortality and improves intestinal epithelial homeostasis in experimental sepsis.
Academic Article Effects of different complementary feeding regimens on iron status and enteric microbiota in breastfed infants.
Academic Article Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data.
Academic Article A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease.
Academic Article The microbiome of the middle meatus in healthy adults.
Academic Article Induction of diabetes in the RIP-B7.1 mouse model is critically dependent on TLR3 and MyD88 pathways and is associated with alterations in the intestinal microbiome.
Academic Article Preconception maternal nutrition: a multi-site randomized controlled trial.
Academic Article An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia.
Academic Article Carbon dioxide and hydrogen sulfide associations with regional bacterial diversity patterns in microbially induced concrete corrosion.
Academic Article High colonization rate and prolonged shedding of Clostridium difficile in pediatric oncology patients.
Academic Article The effect of PPI use on human gut microbiota and weight loss in patients undergoing laparoscopic Roux-en-Y gastric bypass.
Academic Article Microbiome manipulation modifies sex-specific risk for autoimmunity.
Academic Article Sinus culture poorly predicts resident microbiota.
Academic Article Molecular analysis of single room humidifier bacteriology.
Academic Article Initial investigation of small colony variants of Staphylococcus aureus in chronic rhinosinusitis.
Academic Article Intestinal lesions are associated with altered intestinal microbiome and are more frequent in children and young adults with cystic fibrosis and cirrhosis.
Academic Article High-resolution microbial community succession of microbially induced concrete corrosion in working sanitary manholes.
Academic Article Gut dendritic cell activation links an altered colonic microbiome to mucosal and systemic T-cell activation in untreated HIV-1 infection.
Academic Article Structural analysis of specificity: alpha-lytic protease complexes with analogues of reaction intermediates.
Academic Article Analysis of prepro-alpha-lytic protease expression in Escherichia coli reveals that the pro region is required for activity.
Academic Article Characterization and functional ordering of Slu7p and Prp17p during the second step of pre-mRNA splicing in yeast.
Academic Article An essential splicing factor, SLU7, mediates 3' splice site choice in yeast.
Academic Article Synthetic lethal mutations suggest interactions between U5 small nuclear RNA and four proteins required for the second step of splicing.
Academic Article Effects of Vaccination with 10-Valent Pneumococcal Non-Typeable Haemophilus influenza Protein D Conjugate Vaccine (PHiD-CV) on the Nasopharyngeal Microbiome of Kenyan Toddlers.
Academic Article Alterations in Intestinal Microbiota Correlate With Susceptibility to Type 1 Diabetes.
Academic Article Sinus microbiota varies among chronic rhinosinusitis phenotypes and predicts surgical outcome.
Academic Article Altered Interactions between the Gut Microbiome and Colonic Mucosa Precede Polyposis in APCMin/+ Mice.
Academic Article Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis.
Academic Article A "CLEAN CASE" OF SYSTEMIC INJURY: MESENTERIC LYMPH AFTER HEMORRHAGIC SHOCK ELICITS A STERILE INFLAMMATORY RESPONSE.
Academic Article Response to Comment on Alkanani et al. Alterations in Intestinal Microbiota Correlate With Susceptibility to Type 1 Diabetes. Diabetes 2015;64:3510-3520.
Academic Article Comparison of Fecal Microbiota in Children with Autism Spectrum Disorders and Neurotypical Siblings in the Simons Simplex Collection.
Academic Article Systematic review: microbial dysbiosis and nonalcoholic fatty liver disease.
Academic Article Correction: Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis.
Academic Article MRSA colonization and the nasal microbiome in adults at high risk of colonization and infection.
Academic Article Microbial aerosol liberation from soiled textiles isolated during routine residuals handling in a modern health care setting.
Academic Article Changes in Gut and Plasma Microbiome following Exercise Challenge in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS).
Academic Article The sinonasal bacterial microbiome in health and disease.
Academic Article Enhancement of HIV-1 infection and intestinal CD4+ T cell depletion ex vivo by gut microbes altered during chronic HIV-1 infection.
Academic Article Impact of cigarette smoking on the middle meatus microbiome in health and chronic rhinosinusitis.
Academic Article Investigation of bacterial repopulation after sinus surgery and perioperative antibiotics.
Academic Article Antibiotic and Antiinflammatory Therapy Transiently Reduces Inflammation and Hypercoagulation in Acutely SIV-Infected Pigtailed Macaques.
Academic Article Comparison of Whole-Genome Sequencing and Molecular-Epidemiological Techniques for Clostridium difficile Strain Typing.
Academic Article Mode of Delivery Determines Neonatal Pharyngeal Bacterial Composition and Early Intestinal Colonization.
Academic Article Evaluation of bacterial transmission to the paranasal sinuses through sinus irrigation.
Academic Article Microbiome of the paranasal sinuses: Update and literature review.
Academic Article International Consensus Statement on Allergy and Rhinology: Rhinosinusitis.
Academic Article Alterations in human milk leptin and insulin are associated with early changes in the infant intestinal microbiome.
Academic Article Immune Responses to Circulating and Vaccine Viral Strains in HIV-Infected and Uninfected Children and Youth Who Received the 2013/2014 Quadrivalent Live-Attenuated Influenza Vaccine.
Academic Article Influence of Gelatin-Thrombin Matrix Tissue Sealant on Bacterial Colony Formation and Risk of Pelvic Infection.
Academic Article Complete Genome Sequence of Escherichia coli ER1821R, a Laboratory K-12 Derivative Engineered To Be Deficient in All Methylcytosine and Methyladenine Restriction Systems.
Academic Article Effect of Vitamin E With Therapeutic Iron Supplementation on Iron Repletion and Gut Microbiome in US Iron Deficient Infants and Toddlers.
Academic Article Antibody responses to influenza a H1N1 vaccine compared to the circulating strain in influenza vaccine recipients during the 2013/2014 season in North America.
Academic Article The gut microbiome and HIV-1 pathogenesis: a two-way street.
Academic Article Whole-Genome Sequencing Identifies In Vivo Acquisition of a blaCTX-M-27-Carrying IncFII Transmissible Plasmid as the Cause of Ceftriaxone Treatment Failure for an Invasive Salmonella enterica Serovar Typhimurium Infection.
Academic Article Low abundance of colonic butyrate-producing bacteria in HIV infection is associated with microbial translocation and immune activation.
Academic Article Investigation of sinonasal microbiome spatial organization in chronic rhinosinusitis.
Academic Article Reply to M Gotteland and F Magne.
Academic Article Inside Out: HIV, the Gut Microbiome, and the Mucosal Immune System.
Academic Article Erratum for McCollister et al., Whole-Genome Sequencing Identifies In Vivo Acquisition of a blaCTX-M-27-Carrying IncFII Transmissible Plasmid as the Cause of Ceftriaxone Treatment Failure for an Invasive Salmonella enterica Serovar Typhimurium Infection.
Academic Article Implication of the intestinal microbiome as a potential surrogate marker of immune responsiveness to experimental therapies in autoimmune diabetes.
Academic Article Group B Streptococci Colonization in Pregnant Guatemalan Women: Prevalence, Risk Factors, and Vaginal Microbiome.
Academic Article Iron in Micronutrient Powder Promotes an Unfavorable Gut Microbiota in Kenyan Infants.
Academic Article Bacteroidales recruit IL-6-producing intraepithelial lymphocytes in the colon to promote barrier integrity.
Academic Article Brief Report: Inflammatory Colonic Innate Lymphoid Cells Are Increased During Untreated HIV-1 Infection and Associated With Markers of Gut Dysbiosis and Mucosal Immune Activation.
Academic Article Maternal treatment with short-chain fatty acids modulates the intestinal microbiota and immunity and ameliorates type 1 diabetes in the offspring.
Academic Article Expression of immunoglobulin D is increased in chronic rhinosinusitis.
Academic Article Associations between acute gastrointestinal GvHD and the baseline gut microbiota of allogeneic hematopoietic stem cell transplant recipients and donors.
Academic Article Early Microbes Modify Immune System Development and Metabolic Homeostasis-The "Restaurant" Hypothesis Revisited.
Academic Article Evaluation of bloodstream infections, Clostridium difficile infections, and gut microbiota in pediatric oncology patients.
Academic Article Role of gp91phox in hepatic macrophage programming and alcoholic liver disease.
Academic Article Longitudinal microbiome analysis of single donor fecal microbiota transplantation in patients with recurrent Clostridium difficile infection and/or ulcerative colitis.
Academic Article Time Course of C-Reactive Protein and Procalcitonin Levels During the Treatment of Acute Bacterial Skin Infections.
Academic Article Pyrroloquinoline quinone prevents developmental programming of microbial dysbiosis and macrophage polarization to attenuate liver fibrosis in offspring of obese mice.
Academic Article Modulation of Inflammatory Arthritis in Mice by Gut Microbiota Through Mucosal Inflammation and Autoantibody Generation.
Academic Article Genomic evolution of Staphylococcus aureus isolates colonizing the nares and progressing to bacteremia.
Academic Article Correction: Evaluation of bloodstream infections, Clostridium difficile infections, and gut microbiota in pediatric oncology patients.
Academic Article Microbiome in patients with upper airway disease: Moving from taxonomic findings to mechanisms and causality.
Academic Article Functional intraepithelial lymphocyte changes in inflammatory bowel disease and spondyloarthritis have disease specific correlations with intestinal microbiota.
Academic Article Probiotic supplements prevented oxonic acid-induced hyperuricemia and renal damage.
Academic Article Determinants of the Nasal Microbiome: Pilot Study of Effects of Intranasal Medication Use.
Academic Article The gut microbiota in infants of obese mothers increases inflammation and susceptibility to NAFLD.
Academic Article FUT2 Variants Confer Susceptibility to Familial Otitis Media.
Academic Article The Acute Influence of Acid Suppression with Esomeprazole on Gastrointestinal Microbiota and Brain Gene Expression Profiles in a Murine Model of Restraint Stress.
Academic Article Advanced Age Impairs Intestinal Antimicrobial Peptide Response and Worsens Fecal Microbiome Dysbiosis Following Burn Injury in Mice.
Academic Article Among older adults, age-related changes in the stool microbiome differ by HIV-1 serostatus.
Academic Article Influence of Crohn's disease related polymorphisms in innate immune function on ileal microbiome.
Concept Autism Spectrum Disorder
Concept Sevelamer
Concept RNA Splicing Factors
Concept Dietary Approaches To Stop Hypertension
Concept Food Safety
Concept Whole Genome Sequencing
Concept Molecular Sequence Annotation
Concept Transcriptome
Concept High-Throughput Nucleotide Sequencing
Concept Exome
Concept Non-alcoholic Fatty Liver Disease
Academic Article Oral vitamin B12 supplement is delivered to the distal gut, altering the corrinoid profile and selectively depleting Bacteroides in C57BL/6 mice.
Academic Article Expression of Bitter Taste Receptors and Solitary Chemosensory Cell Markers in the Human Sinonasal Cavity.
Academic Article Author Correction: The gut microbiota in infants of obese mothers increases inflammation and susceptibility to NAFLD.
Academic Article Different Gut Microbial Profiles in Sub-Saharan African and South Asian Women of Childbearing Age Are Primarily Associated With Dietary Intakes.
Academic Article High-fat diet exacerbates SIV pathogenesis and accelerates disease progression.
Academic Article Identification of Novel Genes and Biological Pathways That Overlap in Infectious and Nonallergic Diseases of the Upper and Lower Airways Using Network Analyses.
Academic Article Obese Adolescents With PCOS Have Altered Biodiversity and Relative Abundance in Gastrointestinal Microbiota.
Academic Article Nutrimetabolomics reveals food-specific compounds in urine of adults consuming a DASH-style diet.
Academic Article Bile acid sequestration reverses liver injury and prevents progression of nonalcoholic steatohepatitis in Western diet-fed mice.
Academic Article Muc5ac Expression Protects the Colonic Barrier in Experimental Colitis.
Academic Article Crohn's Disease Differentially Affects Region-Specific Composition and Aerotolerance Profiles of Mucosally Adherent Bacteria.
Academic Article Otitis media susceptibility and shifts in the head and neck microbiome due to SPINK5 variants.
Academic Article Multi-omic studies on missense PLG variants in families with otitis media.
Academic Article Gestational Diabetes Is Uniquely Associated With Altered Early Seeding of the Infant Gut Microbiota.
Academic Article Altered tissue specialized pro-resolving mediators in chronic rhinosinusitis.
Academic Article Hepatic steatosis relates to gastrointestinal microbiota changes in obese girls with polycystic ovary syndrome.
Academic Article tidyMicro: a pipeline for microbiome data analysis and visualization using the tidyverse in R.
Academic Article A Unique Gut Microbiome-Physical Function Axis Exists in Older People with HIV: An Exploratory Study.
Academic Article Multiomic Predictors of Short-Term Weight Loss and Clinical Outcomes During a Behavioral-Based Weight Loss Intervention.
Academic Article Impact of preoperative antibiotics and other variables on integrated microbiome-host transcriptomic data generated from colorectal cancer resections.
Academic Article Specialized pro-resolving mediator lipidome and 16S rRNA bacterial microbiome data associated with human chronic rhinosinusitis.
Academic Article An exercise intervention alters stool microbiota and metabolites among older, sedentary adults.
Academic Article The Gut Microbiota during a Behavioral Weight Loss Intervention.
Academic Article Randomized, Placebo-Controlled Trial of Rifaximin Therapy for Lowering Gut-Derived Cardiovascular Toxins and Inflammation in CKD.
Academic Article The Short-Chain Fatty Acid Butyrate Attenuates Pulmonary Vascular Remodeling and Inflammation in Hypoxia-Induced Pulmonary Hypertension.
Academic Article The role of CDHR3 in susceptibility to otitis media.

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