University of Colorado Denver - Anschutz Medical Campus
Beedle AEM, Jaganathan A, Albajar-Sigalés A, Yavitt FM, Bera K, Andreu I, Granero-Moya I, Zalvidea D, Kechagia Z, Wiche G, Trepat X, Ivaska J, Anseth KS, Shenoy VB, Roca-Cusachs P
bioRxiv : the preprint server for biology
Beedle AEM, Jaganathan A, Albajar-Sigalés A, Yavitt FM, Bera K, Andreu I, Granero-Moya I, Zalvidea D, Kechagia Z, Wiche G, Trepat X, Ivaska J, Anseth KS, Shenoy VB, Roca-Cusachs P. Fibrillar adhesion dynamics govern the timescales of nuclear mechano-response via the vimentin cytoskeleton. bioRxiv. 2023 Nov 11.
Fibrillar adhesion dynamics govern the timescales of nuclear mechano-response via the vimentin cytoskeleton.
Iyer S, Ismail M, Tamrazi B, Salloum R, de Blank P, Margol A, Correa R, Chen J, Bera K, Statsevych V, Ho ML, Vaidya P, Verma R, Hawes D, Judkins A, Fu P, Madabhushi A, Tiwari P
Iyer S, Ismail M, Tamrazi B, Salloum R, de Blank P, Margol A, Correa R, Chen J, Bera K, Statsevych V, Ho ML, Vaidya P, Verma R, Hawes D, Judkins A, Fu P, Madabhushi A, Tiwari P. Novel MRI deformation-heterogeneity radiomic features are associated with molecular subgroups and overall survival in pediatric medulloblastoma: Preliminary findings from a multi-institutional study. Front Oncol. 2022; 12:915143.
Novel MRI deformation-heterogeneity radiomic features are associated with molecular subgroups and overall survival in pediatric medulloblastoma: Preliminary findings from a multi-institutional study.
Antunes JT, Ofshteyn A, Bera K, Wang EY, Brady JT, Willis JE, Friedman KA, Marderstein EL, Kalady MF, Stein SL, Purysko AS, Paspulati R, Gollamudi J, Madabhushi A, Viswanath SE
Journal of magnetic resonance imaging : JMRI
Antunes JT, Ofshteyn A, Bera K, Wang EY, Brady JT, Willis JE, Friedman KA, Marderstein EL, Kalady MF, Stein SL, Purysko AS, Paspulati R, Gollamudi J, Madabhushi A, Viswanath SE. Radiomic Features of Primary Rectal Cancers on Baseline T2 -Weighted MRI Are Associated With Pathologic Complete Response to Neoadjuvant Chemoradiation: A Multisite Study. J Magn Reson Imaging. 2020 11; 52(5):1531-1541.
Radiomic Features of Primary Rectal Cancers on Baseline T2 -Weighted MRI Are Associated With Pathologic Complete Response to Neoadjuvant Chemoradiation: A Multisite Study.
Alvarez-Jimenez C, Antunes JT, Talasila N, Bera K, Brady JT, Gollamudi J, Marderstein E, Kalady MF, Purysko A, Willis JE, Stein S, Friedman K, Paspulati R, Delaney CP, Romero E, Madabhushi A, Viswanath SE
Alvarez-Jimenez C, Antunes JT, Talasila N, Bera K, Brady JT, Gollamudi J, Marderstein E, Kalady MF, Purysko A, Willis JE, Stein S, Friedman K, Paspulati R, Delaney CP, Romero E, Madabhushi A, Viswanath SE. Radiomic Texture and Shape Descriptors of the Rectal Environment on Post-Chemoradiation T2-Weighted MRI are Associated with Pathologic Tumor Stage Regression in Rectal Cancers: A Retrospective, Multi-Institution Study. Cancers (Basel). 2020 Jul 24; 12(8).
Radiomic Texture and Shape Descriptors of the Rectal Environment on Post-Chemoradiation T2-Weighted MRI are Associated with Pathologic Tumor Stage Regression in Rectal Cancers: A Retrospective, Multi-Institution Study.
Alilou M, Khorrami M, Prasanna P, Bera K, Gupta A, Viswanathan VS, Patil P, Velu PD, Fu P, Velcheti V, Madabhushi A
Alilou M, Khorrami M, Prasanna P, Bera K, Gupta A, Viswanathan VS, Patil P, Velu PD, Fu P, Velcheti V, Madabhushi A. A tumor vasculature-based imaging biomarker for predicting response and survival in patients with lung cancer treated with checkpoint inhibitors. Sci Adv. 2022 Nov 25; 8(47):eabq4609.
A tumor vasculature-based imaging biomarker for predicting response and survival in patients with lung cancer treated with checkpoint inhibitors.
Hiremath A, Viswanathan VS, Bera K, Shiradkar R, Yuan L, Armitage K, Gilkeson R, Ji M, Fu P, Gupta A, Lu C, Madabhushi A
Hiremath A, Viswanathan VS, Bera K, Shiradkar R, Yuan L, Armitage K, Gilkeson R, Ji M, Fu P, Gupta A, Lu C, Madabhushi A. Deep learning reveals lung shape differences on baseline chest CT between mild and severe COVID-19: A multi-site retrospective study. Comput Biol Med. 2024 07; 177:108643.
Deep learning reveals lung shape differences on baseline chest CT between mild and severe COVID-19: A multi-site retrospective study.
Vaidya P, Alilou M, Hiremath A, Gupta A, Bera K, Furin J, Armitage K, Gilkeson R, Yuan L, Fu P, Lu C, Ji M, Madabhushi A
Vaidya P, Alilou M, Hiremath A, Gupta A, Bera K, Furin J, Armitage K, Gilkeson R, Yuan L, Fu P, Lu C, Ji M, Madabhushi A. An End-to-End Integrated Clinical and CT-Based Radiomics Nomogram for Predicting Disease Severity and Need for Ventilator Support in COVID-19 Patients: A Large Multisite Retrospective Study. Front Radiol. 2022; 2.
An End-to-End Integrated Clinical and CT-Based Radiomics Nomogram for Predicting Disease Severity and Need for Ventilator Support in COVID-19 Patients: A Large Multisite Retrospective Study.
Tippareddy C, Martinez OM, Benza AR, Bera K, Ramaiya N, Tirumani SH
Tippareddy C, Martinez OM, Benza AR, Bera K, Ramaiya N, Tirumani SH. From guidelines to radiology practice: navigating the 2023 ASCO guidelines for advanced gastroesophageal cancer and beyond. Abdom Radiol (NY). 2025 01; 50(1):78-93.
From guidelines to radiology practice: navigating the 2023 ASCO guidelines for advanced gastroesophageal cancer and beyond.
Li H, Whitney J, Bera K, Gilmore H, Thorat MA, Badve S, Madabhushi A
Li H, Whitney J, Bera K, Gilmore H, Thorat MA, Badve S, Madabhushi A. Quantitative nuclear histomorphometric features are predictive of Oncotype DX risk categories in ductal carcinoma in situ: preliminary findings. Breast Cancer Res. 2019 10 17; 21(1):114.
Quantitative nuclear histomorphometric features are predictive of Oncotype DX risk categories in ductal carcinoma in situ: preliminary findings.
Maity D, Bera K, Li Y, Ge Z, Ni Q, Konstantopoulos K, Sun SX
Advanced science (Weinheim, Baden-Wurttemberg, Germany)
Maity D, Bera K, Li Y, Ge Z, Ni Q, Konstantopoulos K, Sun SX. Extracellular Hydraulic Resistance Enhances Cell Migration. Adv Sci (Weinh). 2022 Oct; 9(29):e2200927.
Extracellular Hydraulic Resistance Enhances Cell Migration.
Afthinos A, Bera K, Chen J, Ozcelikkale A, Amitrano A, Choudhury MI, Huang R, Pachidis P, Mistriotis P, Chen Y, Konstantopoulos K
Afthinos A, Bera K, Chen J, Ozcelikkale A, Amitrano A, Choudhury MI, Huang R, Pachidis P, Mistriotis P, Chen Y, Konstantopoulos K. Migration and 3D Traction Force Measurements inside Compliant Microchannels. Nano Lett. 2022 09 28; 22(18):7318-7327.
Migration and 3D Traction Force Measurements inside Compliant Microchannels.
Monabbati S, Leo P, Bera K, Michael CW, Nezami BG, Harbhajanka A, Madabhushi A
Monabbati S, Leo P, Bera K, Michael CW, Nezami BG, Harbhajanka A, Madabhushi A. Automated analysis of computerized morphological features of cell clusters associated with malignancy on bile duct brushing whole slide images. Cancer Med. 2023 03; 12(5):6365-6378.
Automated analysis of computerized morphological features of cell clusters associated with malignancy on bile duct brushing whole slide images.
Ismail M, Hill V, Statsevych V, Mason E, Correa R, Prasanna P, Singh G, Bera K, Thawani R, Ahluwalia M, Madabhushi A, Tiwari P
Ismail M, Hill V, Statsevych V, Mason E, Correa R, Prasanna P, Singh G, Bera K, Thawani R, Ahluwalia M, Madabhushi A, Tiwari P. Can Tumor Location on Pre-treatment MRI Predict Likelihood of Pseudo-Progression vs. Tumor Recurrence in Glioblastoma?-A Feasibility Study. Front Comput Neurosci. 2020; 14:563439.
Can Tumor Location on Pre-treatment MRI Predict Likelihood of Pseudo-Progression vs. Tumor Recurrence in Glioblastoma?-A Feasibility Study.
Ismail M, Prasanna P, Bera K, Statsevych V, Hill V, Singh G, Partovi S, Beig N, McGarry S, Laviolette P, Ahluwalia M, Madabhushi A, Tiwari P
Ismail M, Prasanna P, Bera K, Statsevych V, Hill V, Singh G, Partovi S, Beig N, McGarry S, Laviolette P, Ahluwalia M, Madabhushi A, Tiwari P. Radiomic Deformation and Textural Heterogeneity (R-DepTH) Descriptor to Characterize Tumor Field Effect: Application to Survival Prediction in Glioblastoma. IEEE Trans Med Imaging. 2022 07; 41(7):1764-1777.
Radiomic Deformation and Textural Heterogeneity (R-DepTH) Descriptor to Characterize Tumor Field Effect: Application to Survival Prediction in Glioblastoma.
Liu JTC, Glaser AK, Bera K, True LD, Reder NP, Eliceiri KW, Madabhushi A
Liu JTC, Glaser AK, Bera K, True LD, Reder NP, Eliceiri KW, Madabhushi A. Harnessing non-destructive 3D pathology. Nat Biomed Eng. 2021 03; 5(3):203-218.
Harnessing non-destructive 3D pathology.
Vaidya P, Bera K, Gupta A, Wang X, Corredor G, Fu P, Beig N, Prasanna P, Patil PD, Velu PD, Rajiah P, Gilkeson R, Feldman MD, Choi H, Velcheti V, Madabhushi A
Vaidya P, Bera K, Gupta A, Wang X, Corredor G, Fu P, Beig N, Prasanna P, Patil PD, Velu PD, Rajiah P, Gilkeson R, Feldman MD, Choi H, Velcheti V, Madabhushi A. CT derived radiomic score for predicting the added benefit of adjuvant chemotherapy following surgery in stage I, II resectable non-small cell lung cancer: a retrospective multicohort study for outcome prediction. Lancet Digit Health. 2020 03; 2(3):e116-e128.
CT derived radiomic score for predicting the added benefit of adjuvant chemotherapy following surgery in stage I, II resectable non-small cell lung cancer: a retrospective multicohort study for outcome prediction.
Khang A, Barmore A, Tseropoulos G, Bera K, Batan D, Anseth KS
Khang A, Barmore A, Tseropoulos G, Bera K, Batan D, Anseth KS. Automated prediction of fibroblast phenotypes using mathematical descriptors of cellular features. Nat Commun. 2025 Mar 22; 16(1):2841.
Automated prediction of fibroblast phenotypes using mathematical descriptors of cellular features.
Vaidya P, Bera K, Linden PA, Gupta A, Rajiah PS, Jones DR, Bott M, Pass H, Gilkeson R, Jacono F, Hsieh KL, Lan GY, Velcheti V, Madabhushi A
Vaidya P, Bera K, Linden PA, Gupta A, Rajiah PS, Jones DR, Bott M, Pass H, Gilkeson R, Jacono F, Hsieh KL, Lan GY, Velcheti V, Madabhushi A. Combined Radiomic and Visual Assessment for Improved Detection of Lung Adenocarcinoma Invasiveness on Computed Tomography Scans: A Multi-Institutional Study. Front Oncol. 2022; 12:902056.
Combined Radiomic and Visual Assessment for Improved Detection of Lung Adenocarcinoma Invasiveness on Computed Tomography Scans: A Multi-Institutional Study.
Bera K, O'Connor G, Jiang S, Tirumani SH, Ramaiya N
Current problems in diagnostic radiology
Bera K, O'Connor G, Jiang S, Tirumani SH, Ramaiya N. Analysis of ChatGPT publications in radiology: Literature so far. Curr Probl Diagn Radiol. 2024 Mar-Apr; 53(2):215-225.
Analysis of ChatGPT publications in radiology: Literature so far.
Mew A, Chau E, Bera K, Ramaiya N, Tirumani SH
Mew A, Chau E, Bera K, Ramaiya N, Tirumani SH. Recommendations from Imaging, Oncology, and Radiology Organizations to Guide Management in Prostate Cancer: Summary of Current Recommendations. Radiol Imaging Cancer. 2025 Jan; 7(1):e240091.
Recommendations from Imaging, Oncology, and Radiology Organizations to Guide Management in Prostate Cancer: Summary of Current Recommendations.
Bera K, Katz I, Madabhushi A. Reimagining T Staging Through Artificial Intelligence and Machine Learning Image Processing Approaches in Digital Pathology. JCO Clin Cancer Inform. 2020 11; 4:1039-1050.
Reimagining T Staging Through Artificial Intelligence and Machine Learning Image Processing Approaches in Digital Pathology.
Khorrami M, Jain P, Bera K, Alilou M, Thawani R, Patil P, Ahmad U, Murthy S, Stephans K, Fu P, Velcheti V, Madabhushi A
Khorrami M, Jain P, Bera K, Alilou M, Thawani R, Patil P, Ahmad U, Murthy S, Stephans K, Fu P, Velcheti V, Madabhushi A. Corrigendum to "Predicting pathologic response to neoadjuvant chemoradiation in resectable stage III non-small cell lung cancer patients using computed tomography radiomic features" [Lung Cancer 135 (September) (2019) 1-9]. Lung Cancer. 2019 Oct; 136:156.
Corrigendum to "Predicting pathologic response to neoadjuvant chemoradiation in resectable stage III non-small cell lung cancer patients using computed tomography radiomic features" [Lung Cancer 135 (September) (2019) 1-9].
Hiremath A, Bera K, Yuan L, Vaidya P, Alilou M, Furin J, Armitage K, Gilkeson R, Ji M, Fu P, Gupta A, Lu C, Madabhushi A
IEEE journal of biomedical and health informatics
Hiremath A, Bera K, Yuan L, Vaidya P, Alilou M, Furin J, Armitage K, Gilkeson R, Ji M, Fu P, Gupta A, Lu C, Madabhushi A. Integrated Clinical and CT Based Artificial Intelligence Nomogram for Predicting Severity and Need for Ventilator Support in COVID-19 Patients: A Multi-Site Study. IEEE J Biomed Health Inform. 2021 11; 25(11):4110-4118.
Integrated Clinical and CT Based Artificial Intelligence Nomogram for Predicting Severity and Need for Ventilator Support in COVID-19 Patients: A Multi-Site Study.
Azarianpour S, Corredor G, Bera K, Leo P, Fu P, Toro P, Joehlin-Price A, Mokhtari M, Mahdi H, Madabhushi A
Azarianpour S, Corredor G, Bera K, Leo P, Fu P, Toro P, Joehlin-Price A, Mokhtari M, Mahdi H, Madabhushi A. Computational image features of immune architecture is associated with clinical benefit and survival in gynecological cancers across treatment modalities. J Immunother Cancer. 2022 02; 10(2).
Computational image features of immune architecture is associated with clinical benefit and survival in gynecological cancers across treatment modalities.
Bera K, Braman N, Gupta A, Velcheti V, Madabhushi A
Bera K, Braman N, Gupta A, Velcheti V, Madabhushi A. Predicting cancer outcomes with radiomics and artificial intelligence in radiology. Nat Rev Clin Oncol. 2022 02; 19(2):132-146.
Predicting cancer outcomes with radiomics and artificial intelligence in radiology.
Chau E, Mew A, Bera K, Jiang S, Ramaiya N, Gilkeson R
Chau E, Mew A, Bera K, Jiang S, Ramaiya N, Gilkeson R. Emergency department imaging utilization post-transcatheter aortic valve replacement: single institution 7-year experience. Emerg Radiol. 2024 Jun; 31(3):349-357.
Emergency department imaging utilization post-transcatheter aortic valve replacement: single institution 7-year experience.
Banna M, Bera K, Sochol R, Lin L, Najjaran H, Sadiq R, Hoorfar M
Banna M, Bera K, Sochol R, Lin L, Najjaran H, Sadiq R, Hoorfar M. 3D Printing-Based Integrated Water Quality Sensing System. Sensors (Basel). 2017 Jun 08; 17(6).
3D Printing-Based Integrated Water Quality Sensing System.
Laukamp KR, Dastmalchian S, Tandon YK, Ciancibello L, Pennig L, Lennartz S, Al-Kindi S, Rajagopalan S, Bera K, Hokamp NG, Gilkeson R, Gupta A
Laukamp KR, Dastmalchian S, Tandon YK, Ciancibello L, Pennig L, Lennartz S, Al-Kindi S, Rajagopalan S, Bera K, Hokamp NG, Gilkeson R, Gupta A. Imaging of the Left Atrial Appendage Before Occluder Device Placement: Evaluation of Virtual Monoenergetic Images in a Single-Bolus Dual-Phase Protocol. J Comput Assist Tomogr. 2022 Sep-Oct 01; 46(5):735-741.
Imaging of the Left Atrial Appendage Before Occluder Device Placement: Evaluation of Virtual Monoenergetic Images in a Single-Bolus Dual-Phase Protocol.
Chirra P, Sharma A, Bera K, Cohn HM, Kurowski JA, Amann K, Rivero MJ, Madabhushi A, Lu C, Paspulati R, Stein SL, Katz JA, Viswanath SE, Dave M
Chirra P, Sharma A, Bera K, Cohn HM, Kurowski JA, Amann K, Rivero MJ, Madabhushi A, Lu C, Paspulati R, Stein SL, Katz JA, Viswanath SE, Dave M. Integrating Radiomics With Clinicoradiological Scoring Can Predict High-Risk Patients Who Need Surgery in Crohn's Disease: A Pilot Study. Inflamm Bowel Dis. 2023 03 01; 29(3):349-358.
Integrating Radiomics With Clinicoradiological Scoring Can Predict High-Risk Patients Who Need Surgery in Crohn's Disease: A Pilot Study.
Zhang Y, Li Y, Thompson KN, Stoletov K, Yuan Q, Bera K, Lee SJ, Zhao R, Kiepas A, Wang Y, Mistriotis P, Serra SA, Lewis JD, Valverde MA, Martin SS, Sun SX, Konstantopoulos K
Zhang Y, Li Y, Thompson KN, Stoletov K, Yuan Q, Bera K, Lee SJ, Zhao R, Kiepas A, Wang Y, Mistriotis P, Serra SA, Lewis JD, Valverde MA, Martin SS, Sun SX, Konstantopoulos K. Polarized NHE1 and SWELL1 regulate migration direction, efficiency and metastasis. Nat Commun. 2022 10 17; 13(1):6128.
Polarized NHE1 and SWELL1 regulate migration direction, efficiency and metastasis.
Hushka EA, Blatchley MR, Macdougall LJ, Yavitt FM, Kirkpatrick BE, Bera K, Dempsey PJ, Anseth KS
Hushka EA, Blatchley MR, Macdougall LJ, Yavitt FM, Kirkpatrick BE, Bera K, Dempsey PJ, Anseth KS. Fully synthetic hydrogels promote robust crypt formation in intestinal organoids. bioRxiv. 2024 Jul 10.
Fully synthetic hydrogels promote robust crypt formation in intestinal organoids.
Zhao J, Bera K, Mohamed A, Li Q, Ramaiya N, Tirumani SH
Zhao J, Bera K, Mohamed A, Li Q, Ramaiya N, Tirumani SH. Comparison of RECIST 1.1, mRECIST and PERCIST for assessment of peptide receptor radionuclide therapy treatment response in metastatic neuroendocrine tumors. Curr Probl Diagn Radiol. 2025 Mar-Apr; 54(2):228-232.
Comparison of RECIST 1.1, mRECIST and PERCIST for assessment of peptide receptor radionuclide therapy treatment response in metastatic neuroendocrine tumors.
Hunter JG, Pierce JD, Gilkeson RC, Bera K, Gupta A
Hunter JG, Pierce JD, Gilkeson RC, Bera K, Gupta A. Clinical Implementation of an Artificial Intelligence Tool in the Detection and Management of Pneumothoraces in Patients With COVID-19. Cureus. 2023 Jul; 15(7):e42509.
Clinical Implementation of an Artificial Intelligence Tool in the Detection and Management of Pneumothoraces in Patients With COVID-19.
Ohnsorg ML, Mash KM, Khang A, Rao VV, Kirkpatrick BE, Bera K, Anseth KS
Advanced materials (Deerfield Beach, Fla.)
Ohnsorg ML, Mash KM, Khang A, Rao VV, Kirkpatrick BE, Bera K, Anseth KS. Nonlinear Elastic Bottlebrush Polymer Hydrogels Modulate Actomyosin Mediated Protrusion Formation in Mesenchymal Stromal Cells. Adv Mater. 2024 Jul; 36(28):e2403198.
Nonlinear Elastic Bottlebrush Polymer Hydrogels Modulate Actomyosin Mediated Protrusion Formation in Mesenchymal Stromal Cells.
Koyuncu CF, Lu C, Bera K, Zhang Z, Xu J, Toro P, Corredor G, Chute D, Fu P, Thorstad WL, Faraji F, Bishop JA, Mehrad M, Castro PD, Sikora AG, Thompson LD, Chernock RD, Lang Kuhs KA, Luo J, Sandulache V, Adelstein DJ, Koyfman S, Lewis JS, Madabhushi A
Koyuncu CF, Lu C, Bera K, Zhang Z, Xu J, Toro P, Corredor G, Chute D, Fu P, Thorstad WL, Faraji F, Bishop JA, Mehrad M, Castro PD, Sikora AG, Thompson LD, Chernock RD, Lang Kuhs KA, Luo J, Sandulache V, Adelstein DJ, Koyfman S, Lewis JS, Madabhushi A. Computerized tumor multinucleation index (MuNI) is prognostic in p16+ oropharyngeal carcinoma. J Clin Invest. 2021 04 15; 131(8).
Computerized tumor multinucleation index (MuNI) is prognostic in p16+ oropharyngeal carcinoma.
Doddi S, Bera K, Myers A, Ramaiya N, Tirumani SH
Doddi S, Bera K, Myers A, Ramaiya N, Tirumani SH. Development and Implementation of Integrated Radiologist-Speech Pathologist Report for Modified Barium Swallow Study: Experience at a Multi-hospital Single Health Care System. Curr Probl Diagn Radiol. 2023 Mar-Apr; 52(2):89-92.
Development and Implementation of Integrated Radiologist-Speech Pathologist Report for Modified Barium Swallow Study: Experience at a Multi-hospital Single Health Care System.
Beig N, Khorrami M, Alilou M, Prasanna P, Braman N, Orooji M, Rakshit S, Bera K, Rajiah P, Ginsberg J, Donatelli C, Thawani R, Yang M, Jacono F, Tiwari P, Velcheti V, Gilkeson R, Linden P, Madabhushi A
Beig N, Khorrami M, Alilou M, Prasanna P, Braman N, Orooji M, Rakshit S, Bera K, Rajiah P, Ginsberg J, Donatelli C, Thawani R, Yang M, Jacono F, Tiwari P, Velcheti V, Gilkeson R, Linden P, Madabhushi A. Perinodular and Intranodular Radiomic Features on Lung CT Images Distinguish Adenocarcinomas from Granulomas. Radiology. 2019 03; 290(3):783-792.
Perinodular and Intranodular Radiomic Features on Lung CT Images Distinguish Adenocarcinomas from Granulomas.
Beig N, Bera K, Tiwari P. Introduction to radiomics and radiogenomics in neuro-oncology: implications and challenges. Neurooncol Adv. 2020 Dec; 2(Suppl 4):iv3-iv14.
Introduction to radiomics and radiogenomics in neuro-oncology: implications and challenges.
Mistriotis P, Wisniewski EO, Bera K, Keys J, Li Y, Tuntithavornwat S, Law RA, Perez-Gonzalez NA, Erdogmus E, Zhang Y, Zhao R, Sun SX, Kalab P, Lammerding J, Konstantopoulos K
Mistriotis P, Wisniewski EO, Bera K, Keys J, Li Y, Tuntithavornwat S, Law RA, Perez-Gonzalez NA, Erdogmus E, Zhang Y, Zhao R, Sun SX, Kalab P, Lammerding J, Konstantopoulos K. Confinement hinders motility by inducing RhoA-mediated nuclear influx, volume expansion, and blebbing. J Cell Biol. 2019 12 02; 218(12):4093-4111.
Confinement hinders motility by inducing RhoA-mediated nuclear influx, volume expansion, and blebbing.
American Society of Clinical Oncology educational book. American Society of Clinical Oncology. Annual Meeting
Bera K, Velcheti V, Madabhushi A. Novel Quantitative Imaging for Predicting Response to Therapy: Techniques and Clinical Applications. Am Soc Clin Oncol Educ Book. 2018 May 23; 38:1008-1018.
Novel Quantitative Imaging for Predicting Response to Therapy: Techniques and Clinical Applications.
Zhao R, Cui S, Ge Z, Zhang Y, Bera K, Zhu L, Sun SX, Konstantopoulos K
Zhao R, Cui S, Ge Z, Zhang Y, Bera K, Zhu L, Sun SX, Konstantopoulos K. Hydraulic resistance induces cell phenotypic transition in confinement. Sci Adv. 2021 04; 7(17).
Hydraulic resistance induces cell phenotypic transition in confinement.
Hunter JG, Prajapati P, Bera K, Gupta A, Gupta A
Hunter JG, Prajapati P, Bera K, Gupta A, Gupta A. Imaging Depiction of Hypoxic Pulmonary Vasoconstriction Using Dual-Energy CT. Cureus. 2023 Mar; 15(3):e36551.
Imaging Depiction of Hypoxic Pulmonary Vasoconstriction Using Dual-Energy CT.
Gupta A, Kikano EG, Bera K, Baruah D, Saboo SS, Lennartz S, Hokamp NG, Gholamrezanezhad A, Gilkeson RC, Laukamp KR
Gupta A, Kikano EG, Bera K, Baruah D, Saboo SS, Lennartz S, Hokamp NG, Gholamrezanezhad A, Gilkeson RC, Laukamp KR. Dual energy imaging in cardiothoracic pathologies: A primer for radiologists and clinicians. Eur J Radiol Open. 2021; 8:100324.
Dual energy imaging in cardiothoracic pathologies: A primer for radiologists and clinicians.
Corredor G, Toro P, Koyuncu C, Lu C, Buzzy C, Bera K, Fu P, Mehrad M, Ely KA, Mokhtari M, Yang K, Chute D, Adelstein DJ, Thompson LDR, Bishop JA, Faraji F, Thorstad W, Castro P, Sandulache V, Koyfman SA, Lewis JS, Madabhushi A
Journal of the National Cancer Institute
Corredor G, Toro P, Koyuncu C, Lu C, Buzzy C, Bera K, Fu P, Mehrad M, Ely KA, Mokhtari M, Yang K, Chute D, Adelstein DJ, Thompson LDR, Bishop JA, Faraji F, Thorstad W, Castro P, Sandulache V, Koyfman SA, Lewis JS, Madabhushi A. An Imaging Biomarker of Tumor-Infiltrating Lymphocytes to Risk-Stratify Patients With HPV-Associated Oropharyngeal Cancer. J Natl Cancer Inst. 2022 04 11; 114(4):609-617.
An Imaging Biomarker of Tumor-Infiltrating Lymphocytes to Risk-Stratify Patients With HPV-Associated Oropharyngeal Cancer.
Khorrami M, Jain P, Bera K, Alilou M, Thawani R, Patil P, Ahmad U, Murthy S, Stephans K, Fu P, Velcheti V, Madabhushi A. Predicting pathologic response to neoadjuvant chemoradiation in resectable stage III non-small cell lung cancer patients using computed tomography radiomic features. Lung Cancer. 2019 09; 135:1-9.
Predicting pathologic response to neoadjuvant chemoradiation in resectable stage III non-small cell lung cancer patients using computed tomography radiomic features.
Tippareddy C, Jiang S, Bera K, Ramaiya N
Tippareddy C, Jiang S, Bera K, Ramaiya N. Radiology Reading Room for the Future: Harnessing the Power of Large Language Models Like ChatGPT. Curr Probl Diagn Radiol. 2025 Jul-Aug; 54(4):408-413.
Radiology Reading Room for the Future: Harnessing the Power of Large Language Models Like ChatGPT.
Leo P, Chandramouli S, Farré X, Elliott R, Janowczyk A, Bera K, Fu P, Janaki N, El-Fahmawi A, Shahait M, Kim J, Lee D, Yamoah K, Rebbeck TR, Khani F, Robinson BD, Shih NNC, Feldman M, Gupta S, McKenney J, Lal P, Madabhushi A
Leo P, Chandramouli S, Farré X, Elliott R, Janowczyk A, Bera K, Fu P, Janaki N, El-Fahmawi A, Shahait M, Kim J, Lee D, Yamoah K, Rebbeck TR, Khani F, Robinson BD, Shih NNC, Feldman M, Gupta S, McKenney J, Lal P, Madabhushi A. Computationally Derived Cribriform Area Index from Prostate Cancer Hematoxylin and Eosin Images Is Associated with Biochemical Recurrence Following Radical Prostatectomy and Is Most Prognostic in Gleason Grade Group 2. Eur Urol Focus. 2021 Jul; 7(4):722-732.
Computationally Derived Cribriform Area Index from Prostate Cancer Hematoxylin and Eosin Images Is Associated with Biochemical Recurrence Following Radical Prostatectomy and Is Most Prognostic in Gleason Grade Group 2.
Leo P, Janowczyk A, Elliott R, Janaki N, Bera K, Shiradkar R, Farré X, Fu P, El-Fahmawi A, Shahait M, Kim J, Lee D, Yamoah K, Rebbeck TR, Khani F, Robinson BD, Eklund L, Jambor I, Merisaari H, Ettala O, Taimen P, Aronen HJ, Boström PJ, Tewari A, Magi-Galluzzi C, Klein E, Purysko A, Nc Shih N, Feldman M, Gupta S, Lal P, Madabhushi A
Leo P, Janowczyk A, Elliott R, Janaki N, Bera K, Shiradkar R, Farré X, Fu P, El-Fahmawi A, Shahait M, Kim J, Lee D, Yamoah K, Rebbeck TR, Khani F, Robinson BD, Eklund L, Jambor I, Merisaari H, Ettala O, Taimen P, Aronen HJ, Boström PJ, Tewari A, Magi-Galluzzi C, Klein E, Purysko A, Nc Shih N, Feldman M, Gupta S, Lal P, Madabhushi A. Computer extracted gland features from H&E predicts prostate cancer recurrence comparably to a genomic companion diagnostic test: a large multi-site study. NPJ Precis Oncol. 2021 May 03; 5(1):35.
Computer extracted gland features from H&E predicts prostate cancer recurrence comparably to a genomic companion diagnostic test: a large multi-site study.
Eck B, Chirra PV, Muchhala A, Hall S, Bera K, Tiwari P, Madabhushi A, Seiberlich N, Viswanath SE
Eck B, Chirra PV, Muchhala A, Hall S, Bera K, Tiwari P, Madabhushi A, Seiberlich N, Viswanath SE. Prospective Evaluation of Repeatability and Robustness of Radiomic Descriptors in Healthy Brain Tissue Regions In Vivo Across Systematic Variations in T2-Weighted Magnetic Resonance Imaging Acquisition Parameters. J Magn Reson Imaging. 2021 09; 54(3):1009-1021.
Prospective Evaluation of Repeatability and Robustness of Radiomic Descriptors in Healthy Brain Tissue Regions In Vivo Across Systematic Variations in T2-Weighted Magnetic Resonance Imaging Acquisition Parameters.
Lu C, Koyuncu C, Corredor G, Prasanna P, Leo P, Wang X, Janowczyk A, Bera K, Lewis J, Velcheti V, Madabhushi A
Lu C, Koyuncu C, Corredor G, Prasanna P, Leo P, Wang X, Janowczyk A, Bera K, Lewis J, Velcheti V, Madabhushi A. Feature-driven local cell graph (FLocK): New computational pathology-based descriptors for prognosis of lung cancer and HPV status of oropharyngeal cancers. Med Image Anal. 2021 02; 68:101903.
Feature-driven local cell graph (FLocK): New computational pathology-based descriptors for prognosis of lung cancer and HPV status of oropharyngeal cancers.
Bera K, Schalper KA, Rimm DL, Velcheti V, Madabhushi A
Bera K, Schalper KA, Rimm DL, Velcheti V, Madabhushi A. Artificial intelligence in digital pathology - new tools for diagnosis and precision oncology. Nat Rev Clin Oncol. 2019 11; 16(11):703-715.
Artificial intelligence in digital pathology - new tools for diagnosis and precision oncology.
Bukhari SMA, Hunter JG, Bera K, Tippareddy C, Johnson CR, Ravi S, Chakraborti S, Gilkeson RC, Gupta A
Bukhari SMA, Hunter JG, Bera K, Tippareddy C, Johnson CR, Ravi S, Chakraborti S, Gilkeson RC, Gupta A. Clinical and imaging aspects of pulmonary embolism: a primer for radiologists. Clin Imaging. 2025 Jan; 117:110328.
Clinical and imaging aspects of pulmonary embolism: a primer for radiologists.
Vaidya P, Bera K, Gupta A, Wang X, Corredor G, Fu P, Beig N, Prasanna P, Patil P, Velu P, Rajiah P, Gilkeson R, Feldman M, Choi H, Velcheti V, Madabhushi A
Vaidya P, Bera K, Gupta A, Wang X, Corredor G, Fu P, Beig N, Prasanna P, Patil P, Velu P, Rajiah P, Gilkeson R, Feldman M, Choi H, Velcheti V, Madabhushi A. CT derived radiomic score for predicting the added benefit of adjuvant chemotherapy following surgery in Stage I, II resectable Non-Small Cell Lung Cancer: a retrospective multi-cohort study for outcome prediction. Lancet Digit Health. 2020 03; 2(3):e116-e128.
CT derived radiomic score for predicting the added benefit of adjuvant chemotherapy following surgery in Stage I, II resectable Non-Small Cell Lung Cancer: a retrospective multi-cohort study for outcome prediction.
Gupta A, Bera K, Kikano E, Pierce JD, Gan J, Rajdev M, Ciancibello LM, Gupta A, Rajagopalan S, Gilkeson RC
Radiographics : a review publication of the Radiological Society of North America, Inc
Gupta A, Bera K, Kikano E, Pierce JD, Gan J, Rajdev M, Ciancibello LM, Gupta A, Rajagopalan S, Gilkeson RC. Coronary Artery Calcium Scoring: Current Status and Future Directions. Radiographics. 2022 Jul-Aug; 42(4):947-967.
Coronary Artery Calcium Scoring: Current Status and Future Directions.
Bera K, Kiepas A, Zhang Y, Sun SX, Konstantopoulos K
Frontiers in cell and developmental biology
Bera K, Kiepas A, Zhang Y, Sun SX, Konstantopoulos K. The interplay between physical cues and mechanosensitive ion channels in cancer metastasis. Front Cell Dev Biol. 2022; 10:954099.
The interplay between physical cues and mechanosensitive ion channels in cancer metastasis.
Braman N, Prasanna P, Bera K, Alilou M, Khorrami M, Leo P, Etesami M, Vulchi M, Turk P, Gupta A, Jain P, Fu P, Pennell N, Velcheti V, Abraham J, Plecha D, Madabhushi A
Clinical cancer research : an official journal of the American Association for Cancer Research
Braman N, Prasanna P, Bera K, Alilou M, Khorrami M, Leo P, Etesami M, Vulchi M, Turk P, Gupta A, Jain P, Fu P, Pennell N, Velcheti V, Abraham J, Plecha D, Madabhushi A. Novel Radiomic Measurements of Tumor-Associated Vasculature Morphology on Clinical Imaging as a Biomarker of Treatment Response in Multiple Cancers. Clin Cancer Res. 2022 10 14; 28(20):4410-4424.
Novel Radiomic Measurements of Tumor-Associated Vasculature Morphology on Clinical Imaging as a Biomarker of Treatment Response in Multiple Cancers.
Summerville LE, Bera K, Ramaiya N. The productivity, participation, and recognition of women in academic radiology: Past, present, and future. Curr Probl Diagn Radiol. 2025 Jan-Feb; 54(1):97-101.
The productivity, participation, and recognition of women in academic radiology: Past, present, and future.
Khorrami M, Bera K, Thawani R, Rajiah P, Gupta A, Fu P, Linden P, Pennell N, Jacono F, Gilkeson RC, Velcheti V, Madabhushi A
European journal of cancer (Oxford, England : 1990)
Khorrami M, Bera K, Thawani R, Rajiah P, Gupta A, Fu P, Linden P, Pennell N, Jacono F, Gilkeson RC, Velcheti V, Madabhushi A. Distinguishing granulomas from adenocarcinomas by integrating stable and discriminating radiomic features on non-contrast computed tomography scans. Eur J Cancer. 2021 05; 148:146-158.
Distinguishing granulomas from adenocarcinomas by integrating stable and discriminating radiomic features on non-contrast computed tomography scans.
Bera K, Biswas T. Revised hippocratic oath-a step forward in the right direction. Natl Med J India. 2011 Mar-Apr; 24(2):121-2.
Revised hippocratic oath-a step forward in the right direction.
Doddi S, Hibshman T, Salichs O, Bera K, Tippareddy C, Ramaiya N, Tirumani SH
Doddi S, Hibshman T, Salichs O, Bera K, Tippareddy C, Ramaiya N, Tirumani SH. Assessing appropriate responses to ACR urologic imaging scenarios using ChatGPT and Bard. Curr Probl Diagn Radiol. 2024 Mar-Apr; 53(2):226-229.
Assessing appropriate responses to ACR urologic imaging scenarios using ChatGPT and Bard.
Yavitt FM, Khang A, Bera K, McNally DL, Blatchley MR, Gallagher AP, Klein OD, Castillo-Azofeifa D, Dempsey PJ, Anseth KS
Yavitt FM, Khang A, Bera K, McNally DL, Blatchley MR, Gallagher AP, Klein OD, Castillo-Azofeifa D, Dempsey PJ, Anseth KS. Engineered epithelial curvature controls Paneth cell localization in intestinal organoids. Cell Biomater. 2025 Apr 22; 1(3).
Engineered epithelial curvature controls Paneth cell localization in intestinal organoids.
Beig N, Singh S, Bera K, Prasanna P, Singh G, Chen J, Saeed Bamashmos A, Barnett A, Hunter K, Statsevych V, Hill VB, Varadan V, Madabhushi A, Ahluwalia MS, Tiwari P
Beig N, Singh S, Bera K, Prasanna P, Singh G, Chen J, Saeed Bamashmos A, Barnett A, Hunter K, Statsevych V, Hill VB, Varadan V, Madabhushi A, Ahluwalia MS, Tiwari P. Sexually dimorphic radiogenomic models identify distinct imaging and biological pathways that are prognostic of overall survival in glioblastoma. Neuro Oncol. 2021 02 25; 23(2):251-263.
Sexually dimorphic radiogenomic models identify distinct imaging and biological pathways that are prognostic of overall survival in glioblastoma.
Lu C, Bera K, Wang X, Prasanna P, Xu J, Janowczyk A, Beig N, Yang M, Fu P, Lewis J, Choi H, Schmid RA, Berezowska S, Schalper K, Rimm D, Velcheti V, Madabhushi A
Lu C, Bera K, Wang X, Prasanna P, Xu J, Janowczyk A, Beig N, Yang M, Fu P, Lewis J, Choi H, Schmid RA, Berezowska S, Schalper K, Rimm D, Velcheti V, Madabhushi A. A prognostic model for overall survival of patients with early-stage non-small cell lung cancer: a multicentre, retrospective study. Lancet Digit Health. 2020 11; 2(11):e594-e606.
A prognostic model for overall survival of patients with early-stage non-small cell lung cancer: a multicentre, retrospective study.
Anderson W, Bera K, Smith D, Tirumani SH, Ramaiya N
Anderson W, Bera K, Smith D, Tirumani SH, Ramaiya N. Emergency department imaging utilization of cancer patients treated with bevacizumab: single-institution 8-year experience. Emerg Radiol. 2023 Aug; 30(4):407-418.
Emergency department imaging utilization of cancer patients treated with bevacizumab: single-institution 8-year experience.
Bera K, Ramaiya N, Paspulati RM, Nakamoto D, Tirumani SH
Bera K, Ramaiya N, Paspulati RM, Nakamoto D, Tirumani SH. 3.0-T MR-guided transgluteal in-bore-targeted prostate biopsy under local anesthesia in patients without rectal access: a single-institute experience and review of literature. Abdom Radiol (NY). 2024 04; 49(4):1223-1230.
3.0-T MR-guided transgluteal in-bore-targeted prostate biopsy under local anesthesia in patients without rectal access: a single-institute experience and review of literature.
Khorrami M, Prasanna P, Gupta A, Patil P, Velu PD, Thawani R, Corredor G, Alilou M, Bera K, Fu P, Feldman M, Velcheti V, Madabhushi A
Khorrami M, Prasanna P, Gupta A, Patil P, Velu PD, Thawani R, Corredor G, Alilou M, Bera K, Fu P, Feldman M, Velcheti V, Madabhushi A. Changes in CT Radiomic Features Associated with Lymphocyte Distribution Predict Overall Survival and Response to Immunotherapy in Non-Small Cell Lung Cancer. Cancer Immunol Res. 2020 01; 8(1):108-119.
Changes in CT Radiomic Features Associated with Lymphocyte Distribution Predict Overall Survival and Response to Immunotherapy in Non-Small Cell Lung Cancer.
Ranjan A, Bera K, Iwakuma T. Murine double minute 2, a potential p53-independent regulator of liver cancer metastasis. Hepatoma Res. 2016; 2:114-121.
Murine double minute 2, a potential p53-independent regulator of liver cancer metastasis.
Ni Q, Ge Z, Li Y, Shatkin G, Fu J, Sen A, Bera K, Yang Y, Wang Y, Wu Y, Nogueira Vasconcelos AC, Yan Y, Lin D, Feinberg AP, Konstantopoulos K, Sun SX
Ni Q, Ge Z, Li Y, Shatkin G, Fu J, Sen A, Bera K, Yang Y, Wang Y, Wu Y, Nogueira Vasconcelos AC, Yan Y, Lin D, Feinberg AP, Konstantopoulos K, Sun SX. Cytoskeletal activation of NHE1 regulates mechanosensitive cell volume adaptation and proliferation. Cell Rep. 2024 12 24; 43(12):114992.
Cytoskeletal activation of NHE1 regulates mechanosensitive cell volume adaptation and proliferation.
Yankaskas CL, Bera K, Stoletov K, Serra SA, Carrillo-Garcia J, Tuntithavornwat S, Mistriotis P, Lewis JD, Valverde MA, Konstantopoulos K
Yankaskas CL, Bera K, Stoletov K, Serra SA, Carrillo-Garcia J, Tuntithavornwat S, Mistriotis P, Lewis JD, Valverde MA, Konstantopoulos K. The fluid shear stress sensor TRPM7 regulates tumor cell intravasation. Sci Adv. 2021 Jul; 7(28).
The fluid shear stress sensor TRPM7 regulates tumor cell intravasation.
Batan D, Tseropoulos G, Kirkpatrick BE, Bera K, Khang A, Weiser-Evans M, Anseth KS
Batan D, Tseropoulos G, Kirkpatrick BE, Bera K, Khang A, Weiser-Evans M, Anseth KS. PTEN Regulates Myofibroblast Activation in Valvular Interstitial Cells based on Subcellular Localization. bioRxiv. 2024 Nov 21.
PTEN Regulates Myofibroblast Activation in Valvular Interstitial Cells based on Subcellular Localization.
Tran AT, Wisniewski EO, Mistriotis P, Stoletov K, Parlani M, Amitrano A, Ifemembi B, Lee SJ, Bera K, Zhang Y, Tuntithavornwat S, Afthinos A, Kiepas A, Jamieson JJ, Zuo Y, Habib D, Wu PH, Martin SS, Gerecht S, Gu L, Lewis JD, Kalab P, Friedl P, Konstantopoulos K
Tran AT, Wisniewski EO, Mistriotis P, Stoletov K, Parlani M, Amitrano A, Ifemembi B, Lee SJ, Bera K, Zhang Y, Tuntithavornwat S, Afthinos A, Kiepas A, Jamieson JJ, Zuo Y, Habib D, Wu PH, Martin SS, Gerecht S, Gu L, Lewis JD, Kalab P, Friedl P, Konstantopoulos K. Cytoplasmic accumulation and plasma membrane association of anillin and Ect2 promote confined migration and invasion. Res Sq. 2024 Jan 10.
Cytoplasmic accumulation and plasma membrane association of anillin and Ect2 promote confined migration and invasion.
Batan D, Tseropoulos G, Kirkpatrick BE, Bishop C, Bera K, Khang A, Weiser-Evans M, Anseth KS
Batan D, Tseropoulos G, Kirkpatrick BE, Bishop C, Bera K, Khang A, Weiser-Evans M, Anseth KS. PTEN Regulates Myofibroblast Activation in Valvular Interstitial Cells Based on Subcellular Localization. Adv Biol (Weinh). 2025 Jul; 9(7):e2400540.
PTEN Regulates Myofibroblast Activation in Valvular Interstitial Cells Based on Subcellular Localization.
Jiang S, Bukhari SMA, Krishnan A, Bera K, Sharma A, Caovan D, Rosipko B, Gupta A
Jiang S, Bukhari SMA, Krishnan A, Bera K, Sharma A, Caovan D, Rosipko B, Gupta A. Deployment of Artificial Intelligence in Radiology: Strategies for Success. AJR Am J Roentgenol. 2025 Feb; 224(2):e2431898.
Deployment of Artificial Intelligence in Radiology: Strategies for Success.
Khorrami M, Bera K, Leo P, Vaidya P, Patil P, Thawani R, Velu P, Rajiah P, Alilou M, Choi H, Feldman MD, Gilkeson RC, Linden P, Fu P, Pass H, Velcheti V, Madabhushi A
Khorrami M, Bera K, Leo P, Vaidya P, Patil P, Thawani R, Velu P, Rajiah P, Alilou M, Choi H, Feldman MD, Gilkeson RC, Linden P, Fu P, Pass H, Velcheti V, Madabhushi A. Stable and discriminating radiomic predictor of recurrence in early stage non-small cell lung cancer: Multi-site study. Lung Cancer. 2020 04; 142:90-97.
Stable and discriminating radiomic predictor of recurrence in early stage non-small cell lung cancer: Multi-site study.
Jain P, Khorrami M, Gupta A, Rajiah P, Bera K, Viswanathan VS, Fu P, Dowlati A, Madabhushi A
Jain P, Khorrami M, Gupta A, Rajiah P, Bera K, Viswanathan VS, Fu P, Dowlati A, Madabhushi A. Novel Non-Invasive Radiomic Signature on CT Scans Predicts Response to Platinum-Based Chemotherapy and Is Prognostic of Overall Survival in Small Cell Lung Cancer. Front Oncol. 2021; 11:744724.
Novel Non-Invasive Radiomic Signature on CT Scans Predicts Response to Platinum-Based Chemotherapy and Is Prognostic of Overall Survival in Small Cell Lung Cancer.
Vaidya P, Bera K, Patil PD, Gupta A, Jain P, Alilou M, Khorrami M, Velcheti V, Madabhushi A
Vaidya P, Bera K, Patil PD, Gupta A, Jain P, Alilou M, Khorrami M, Velcheti V, Madabhushi A. Novel, non-invasive imaging approach to identify patients with advanced non-small cell lung cancer at risk of hyperprogressive disease with immune checkpoint blockade. J Immunother Cancer. 2020 10; 8(2).
Novel, non-invasive imaging approach to identify patients with advanced non-small cell lung cancer at risk of hyperprogressive disease with immune checkpoint blockade.
Verma R, Correa R, Hill VB, Statsevych V, Bera K, Beig N, Mahammedi A, Madabhushi A, Ahluwalia M, Tiwari P
Verma R, Correa R, Hill VB, Statsevych V, Bera K, Beig N, Mahammedi A, Madabhushi A, Ahluwalia M, Tiwari P. Tumor Habitat-derived Radiomic Features at Pretreatment MRI That Are Prognostic for Progression-free Survival in Glioblastoma Are Associated with Key Morphologic Attributes at Histopathologic Examination: A Feasibility Study. Radiol Artif Intell. 2020 Nov; 2(6):e190168.
Tumor Habitat-derived Radiomic Features at Pretreatment MRI That Are Prognostic for Progression-free Survival in Glioblastoma Are Associated with Key Morphologic Attributes at Histopathologic Examination: A Feasibility Study.
Bera K, Kiepas A, Godet I, Li Y, Mehta P, Ifemembi B, Paul CD, Sen A, Serra SA, Stoletov K, Tao J, Shatkin G, Lee SJ, Zhang Y, Boen A, Mistriotis P, Gilkes DM, Lewis JD, Fan CM, Feinberg AP, Valverde MA, Sun SX, Konstantopoulos K
Bera K, Kiepas A, Godet I, Li Y, Mehta P, Ifemembi B, Paul CD, Sen A, Serra SA, Stoletov K, Tao J, Shatkin G, Lee SJ, Zhang Y, Boen A, Mistriotis P, Gilkes DM, Lewis JD, Fan CM, Feinberg AP, Valverde MA, Sun SX, Konstantopoulos K. Extracellular fluid viscosity enhances cell migration and cancer dissemination. Nature. 2022 Nov; 611(7935):365-373.
Extracellular fluid viscosity enhances cell migration and cancer dissemination.
Braman N, Prasanna P, Whitney J, Singh S, Beig N, Etesami M, Bates DDB, Gallagher K, Bloch BN, Vulchi M, Turk P, Bera K, Abraham J, Sikov WM, Somlo G, Harris LN, Gilmore H, Plecha D, Varadan V, Madabhushi A
Braman N, Prasanna P, Whitney J, Singh S, Beig N, Etesami M, Bates DDB, Gallagher K, Bloch BN, Vulchi M, Turk P, Bera K, Abraham J, Sikov WM, Somlo G, Harris LN, Gilmore H, Plecha D, Varadan V, Madabhushi A. Association of Peritumoral Radiomics With Tumor Biology and Pathologic Response to Preoperative Targeted Therapy for HER2 (ERBB2)-Positive Breast Cancer. JAMA Netw Open. 2019 04 05; 2(4):e192561.
Association of Peritumoral Radiomics With Tumor Biology and Pathologic Response to Preoperative Targeted Therapy for HER2 (ERBB2)-Positive Breast Cancer.
Wilde DC, Castro PD, Bera K, Lai S, Madabhushi A, Corredor G, Koyuncu C, Lewis JS, Lu C, Frederick MJ, Frederick AM, Haugen AE, Zevallos JP, Sturgis EM, Shi J, Huang AT, Hernandez DJ, Skinner HD, Kemnade JO, Yu W, Sikora AG, Sandulache VC
Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc
Wilde DC, Castro PD, Bera K, Lai S, Madabhushi A, Corredor G, Koyuncu C, Lewis JS, Lu C, Frederick MJ, Frederick AM, Haugen AE, Zevallos JP, Sturgis EM, Shi J, Huang AT, Hernandez DJ, Skinner HD, Kemnade JO, Yu W, Sikora AG, Sandulache VC. Oropharyngeal cancer outcomes correlate with p16 status, multinucleation and immune infiltration. Mod Pathol. 2022 08; 35(8):1045-1054.
Oropharyngeal cancer outcomes correlate with p16 status, multinucleation and immune infiltration.
Khorrami M, Khunger M, Zagouras A, Patil P, Thawani R, Bera K, Rajiah P, Fu P, Velcheti V, Madabhushi A
Khorrami M, Khunger M, Zagouras A, Patil P, Thawani R, Bera K, Rajiah P, Fu P, Velcheti V, Madabhushi A. Combination of Peri- and Intratumoral Radiomic Features on Baseline CT Scans Predicts Response to Chemotherapy in Lung Adenocarcinoma. Radiol Artif Intell. 2019 Mar 20; 1(2):e180012.
Combination of Peri- and Intratumoral Radiomic Features on Baseline CT Scans Predicts Response to Chemotherapy in Lung Adenocarcinoma.
Ni Q, Ge Z, Li Y, Shatkin G, Fu J, Bera K, Yang Y, Wang Y, Sen A, Wu Y, Vasconcelos ACN, Feinberg AP, Konstantopoulos K, Sun SX
Ni Q, Ge Z, Li Y, Shatkin G, Fu J, Bera K, Yang Y, Wang Y, Sen A, Wu Y, Vasconcelos ACN, Feinberg AP, Konstantopoulos K, Sun SX. Cytoskeletal activation of NHE1 regulates mechanosensitive cell volume adaptation and proliferation. bioRxiv. 2024 Apr 18.
Wang X, Bera K, Barrera C, Zhou Y, Lu C, Vaidya P, Fu P, Yang M, Schmid RA, Berezowska S, Choi H, Velcheti V, Madabhushi A
Wang X, Bera K, Barrera C, Zhou Y, Lu C, Vaidya P, Fu P, Yang M, Schmid RA, Berezowska S, Choi H, Velcheti V, Madabhushi A. A prognostic and predictive computational pathology image signature for added benefit of adjuvant chemotherapy in early stage non-small-cell lung cancer. EBioMedicine. 2021 Jul; 69:103481.
A prognostic and predictive computational pathology image signature for added benefit of adjuvant chemotherapy in early stage non-small-cell lung cancer.
Hunter JG, Bera K, Shah N, Bukhari SMA, Marshall C, Caovan D, Rosipko B, Gupta A
Hunter JG, Bera K, Shah N, Bukhari SMA, Marshall C, Caovan D, Rosipko B, Gupta A. Real-World Performance of Pneumothorax-Detecting Artificial Intelligence Algorithm and its Impact on Radiologist Reporting Times. Acad Radiol. 2025 Mar; 32(3):1165-1174.
Real-World Performance of Pneumothorax-Detecting Artificial Intelligence Algorithm and its Impact on Radiologist Reporting Times.
Wang X, Barrera C, Bera K, Viswanathan VS, Azarianpour-Esfahani S, Koyuncu C, Velu P, Feldman MD, Yang M, Fu P, Schalper KA, Mahdi H, Lu C, Velcheti V, Madabhushi A
Wang X, Barrera C, Bera K, Viswanathan VS, Azarianpour-Esfahani S, Koyuncu C, Velu P, Feldman MD, Yang M, Fu P, Schalper KA, Mahdi H, Lu C, Velcheti V, Madabhushi A. Spatial interplay patterns of cancer nuclei and tumor-infiltrating lymphocytes (TILs) predict clinical benefit for immune checkpoint inhibitors. Sci Adv. 2022 Jun 03; 8(22):eabn3966.
Spatial interplay patterns of cancer nuclei and tumor-infiltrating lymphocytes (TILs) predict clinical benefit for immune checkpoint inhibitors.
Beig N, Bera K, Prasanna P, Antunes J, Correa R, Singh S, Saeed Bamashmos A, Ismail M, Braman N, Verma R, Hill VB, Statsevych V, Ahluwalia MS, Varadan V, Madabhushi A, Tiwari P
Beig N, Bera K, Prasanna P, Antunes J, Correa R, Singh S, Saeed Bamashmos A, Ismail M, Braman N, Verma R, Hill VB, Statsevych V, Ahluwalia MS, Varadan V, Madabhushi A, Tiwari P. Radiogenomic-Based Survival Risk Stratification of Tumor Habitat on Gd-T1w MRI Is Associated with Biological Processes in Glioblastoma. Clin Cancer Res. 2020 04 15; 26(8):1866-1876.
Radiogenomic-Based Survival Risk Stratification of Tumor Habitat on Gd-T1w MRI Is Associated with Biological Processes in Glioblastoma.
Alilou M, Prasanna P, Bera K, Gupta A, Rajiah P, Yang M, Jacono F, Velcheti V, Gilkeson R, Linden P, Madabhushi A
Alilou M, Prasanna P, Bera K, Gupta A, Rajiah P, Yang M, Jacono F, Velcheti V, Gilkeson R, Linden P, Madabhushi A. A Novel Nodule Edge Sharpness Radiomic Biomarker Improves Performance of Lung-RADS for Distinguishing Adenocarcinomas from Granulomas on Non-Contrast CT Scans. Cancers (Basel). 2021 Jun 03; 13(11).
A Novel Nodule Edge Sharpness Radiomic Biomarker Improves Performance of Lung-RADS for Distinguishing Adenocarcinomas from Granulomas on Non-Contrast CT Scans.
Beig N, Patel J, Prasanna P, Hill V, Gupta A, Correa R, Bera K, Singh S, Partovi S, Varadan V, Ahluwalia M, Madabhushi A, Tiwari P
Beig N, Patel J, Prasanna P, Hill V, Gupta A, Correa R, Bera K, Singh S, Partovi S, Varadan V, Ahluwalia M, Madabhushi A, Tiwari P. Radiogenomic analysis of hypoxia pathway is predictive of overall survival in Glioblastoma. Sci Rep. 2018 01 08; 8(1):7.
Radiogenomic analysis of hypoxia pathway is predictive of overall survival in Glioblastoma.
Hunter JG, Bera K, Ciancibello L, Bukhari SMA, Sposato J, Gilani KA, Gilkeson R, Gupta A
Hunter JG, Bera K, Ciancibello L, Bukhari SMA, Sposato J, Gilani KA, Gilkeson R, Gupta A. Real-world impact of high-pitch helical CT on radiation exposure and image quality in infants being evaluated for cardiothoracic pathologies. Pediatr Radiol. 2025 Jan; 55(1):151-158.
Real-world impact of high-pitch helical CT on radiation exposure and image quality in infants being evaluated for cardiothoracic pathologies.
Mohamed I, Bera K, Ramaiya N. The Undermined ACGME Subcompetency: A Roadmap for Radiology Residency Programs to Foster Residents-as-Educators. Acad Radiol. 2024 03; 31(3):1189-1197.
The Undermined ACGME Subcompetency: A Roadmap for Radiology Residency Programs to Foster Residents-as-Educators.
DeSilvio T, Antunes JT, Bera K, Chirra P, Le H, Liska D, Stein SL, Marderstein E, Hall W, Paspulati R, Gollamudi J, Purysko AS, Viswanath SE
DeSilvio T, Antunes JT, Bera K, Chirra P, Le H, Liska D, Stein SL, Marderstein E, Hall W, Paspulati R, Gollamudi J, Purysko AS, Viswanath SE. Region-specific deep learning models for accurate segmentation of rectal structures on post-chemoradiation T2w MRI: a multi-institutional, multi-reader study. Front Med (Lausanne). 2023; 10:1149056.
Region-specific deep learning models for accurate segmentation of rectal structures on post-chemoradiation T2w MRI: a multi-institutional, multi-reader study.
Corredor G, Toro P, Bera K, Rasmussen D, Viswanathan VS, Buzzy C, Fu P, Barton LM, Stroberg E, Duval E, Gilmore H, Mukhopadhyay S, Madabhushi A
Journal of medical imaging (Bellingham, Wash.)
Corredor G, Toro P, Bera K, Rasmussen D, Viswanathan VS, Buzzy C, Fu P, Barton LM, Stroberg E, Duval E, Gilmore H, Mukhopadhyay S, Madabhushi A. Computational pathology reveals unique spatial patterns of immune response in H&E images from COVID-19 autopsies: preliminary findings. J Med Imaging (Bellingham). 2021 Jan; 8(Suppl 1):017501.
Computational pathology reveals unique spatial patterns of immune response in H&E images from COVID-19 autopsies: preliminary findings.
Li H, Bera K, Toro P, Fu P, Zhang Z, Lu C, Feldman M, Ganesan S, Goldstein LJ, Davidson NE, Glasgow A, Harbhajanka A, Gilmore H, Madabhushi A
Li H, Bera K, Toro P, Fu P, Zhang Z, Lu C, Feldman M, Ganesan S, Goldstein LJ, Davidson NE, Glasgow A, Harbhajanka A, Gilmore H, Madabhushi A. Collagen fiber orientation disorder from H&E images is prognostic for early stage breast cancer: clinical trial validation. NPJ Breast Cancer. 2021 Aug 06; 7(1):104.
Collagen fiber orientation disorder from H&E images is prognostic for early stage breast cancer: clinical trial validation.
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Dorsoventral polarity directs cell responses to migration track geometries.
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Conversational learning among medical students: harnessing the power of web 2.0 through user driven healthcare.
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Computationally integrating radiology and pathology image features for predicting treatment benefit and outcome in lung cancer.
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Cytoplasmic anillin and Ect2 promote RhoA/myosin II-dependent confined migration and invasion.
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Age is more than just a number - Tailoring radiologic practice for the geriatric population.
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Fully Synthetic Hydrogels Promote Robust Crypt Formation in Intestinal Organoids.