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Connection

Jonathan Irish to Humans

This is a "connection" page, showing publications Jonathan Irish has written about Humans.

 
Connection Strength
 
 
 
0.773
 
  1. Sahovaler A, Valic MS, Townson JL, Chan HHL, Zheng M, Tzelnick S, Mondello T, Pener-Tessler A, Eu D, El-Sayes A, Ding L, Chen J, Douglas CM, Weersink R, Muhanna N, Zheng G, Irish JC. Nanoparticle-mediated Photodynamic Therapy as a Method to Ablate Oral Cavity Squamous Cell Carcinoma in Preclinical Models. Cancer Res Commun. 2024 03 15; 4(3):796-810.
    View in: PubMed
    Score: 0.023
  2. Bartkowiak T, Lima SM, Hayes MJ, Mistry AM, Brockman AA, Sinnaeve J, Leelatian N, Roe CE, Mobley BC, Chotai S, Weaver KD, Thompson RC, Chambless LB, Ihrie RA, Irish JM. An immunosuppressed microenvironment distinguishes lateral ventricle-contacting glioblastomas. JCI Insight. 2023 06 22; 8(12).
    View in: PubMed
    Score: 0.022
  3. Medina S, Ihrie RA, Irish JM. Learning cell identity in immunology, neuroscience, and cancer. Semin Immunopathol. 2023 01; 45(1):3-16.
    View in: PubMed
    Score: 0.021
  4. Kramer KJ, Wilfong EM, Voss K, Barone SM, Shiakolas AR, Raju N, Roe CE, Suryadevara N, Walker LM, Wall SC, Paulo A, Schaefer S, Dahunsi D, Westlake CS, Crowe JE, Carnahan RH, Rathmell JC, Bonami RH, Georgiev IS, Irish JM. Single-cell profiling of the antigen-specific response to BNT162b2 SARS-CoV-2 RNA vaccine. Nat Commun. 2022 06 16; 13(1):3466.
    View in: PubMed
    Score: 0.020
  5. Barone SM, Paul AG, Muehling LM, Lannigan JA, Kwok WW, Turner RB, Woodfolk JA, Irish JM. Unsupervised machine learning reveals key immune cell subsets in COVID-19, rhinovirus infection, and cancer therapy. Elife. 2021 08 05; 10.
    View in: PubMed
    Score: 0.019
  6. Wang J, Vahid S, Eberg M, Milroy S, Milkovich J, Wright FC, Hunter A, Kalladeen R, Zanchetta C, Wijeysundera HC, Irish J. Clearing the surgical backlog caused by COVID-19 in Ontario: a time series modelling study. CMAJ. 2020 11 02; 192(44):E1347-E1356.
    View in: PubMed
    Score: 0.018
  7. Douglas CM, Jethwa AR, Hasan W, Liu A, Gilbert R, Goldstein D, De Almedia J, Lipton J, Irish JC. Long-term survival of head and neck squamous cell carcinoma after bone marrow transplant. Head Neck. 2020 11; 42(11):3389-3395.
    View in: PubMed
    Score: 0.018
  8. Davies JC, Chan HHL, Gilbert RW, Irish JC. Nasal Endoscopy During the COVID-19 Pandemic: Mitigating Risk with 3D Printed Masks. Laryngoscope. 2020 11; 130(11):2561-2563.
    View in: PubMed
    Score: 0.018
  9. Leelatian N, Sinnaeve J, Mistry AM, Barone SM, Brockman AA, Diggins KE, Greenplate AR, Weaver KD, Thompson RC, Chambless LB, Mobley BC, Ihrie RA, Irish JM. Unsupervised machine learning reveals risk stratifying glioblastoma tumor cells. Elife. 2020 06 23; 9.
    View in: PubMed
    Score: 0.018
  10. Irish J, Kim J, Waldron J, Wei AC, Winquist E, Yoo J, Boasie A, Brouwers M, Meertens E, McNair S, Walker-Dilks C. Organizational guidance for the care of patients with head-and-neck cancer in Ontario. Curr Oncol. 2020 04; 27(2):e115-e122.
    View in: PubMed
    Score: 0.018
  11. Roe CE, Hayes MJ, Barone SM, Irish JM. Training Novices in Generation and Analysis of High-Dimensional Human Cell Phospho-Flow Cytometry Data. Curr Protoc Cytom. 2020 03; 93(1):e71.
    View in: PubMed
    Score: 0.017
  12. Roussel M, Lhomme F, Roe CE, Bartkowiak T, Gravelle P, Laurent C, Fest T, Irish JM. Mass cytometry defines distinct immune profile in germinal center B-cell lymphomas. Cancer Immunol Immunother. 2020 Mar; 69(3):407-420.
    View in: PubMed
    Score: 0.017
  13. Eskander A, de Almeida JR, Irish JC. Acute Upper Airway Obstruction. N Engl J Med. 2019 Nov 14; 381(20):1940-1949.
    View in: PubMed
    Score: 0.017
  14. Huse K, Wogsland CE, Polikowsky HG, Diggins KE, Smeland EB, Myklebust JH, Irish JM. Human Germinal Center B Cells Differ from Na?ve and Memory B Cells in CD40 Expression and CD40L-Induced Signaling Response. Cytometry A. 2019 04; 95(4):442-449.
    View in: PubMed
    Score: 0.016
  15. Mistry AM, Greenplate AR, Ihrie RA, Irish JM. Beyond the message: advantages of snapshot proteomics with single-cell mass cytometry in solid tumors. FEBS J. 2019 04; 286(8):1523-1539.
    View in: PubMed
    Score: 0.016
  16. Roussel M, Bartkowiak T, Irish JM. Picturing Polarized Myeloid Phagocytes and Regulatory Cells by Mass Cytometry. Methods Mol Biol. 2019; 1989:217-226.
    View in: PubMed
    Score: 0.016
  17. Greenplate AR, McClanahan DD, Oberholtzer BK, Doxie DB, Roe CE, Diggins KE, Leelatian N, Rasmussen ML, Kelley MC, Gama V, Siska PJ, Rathmell JC, Ferrell PB, Johnson DB, Irish JM. Computational Immune Monitoring Reveals Abnormal Double-Negative T Cells Present across Human Tumor Types. Cancer Immunol Res. 2019 01; 7(1):86-99.
    View in: PubMed
    Score: 0.016
  18. Irish JC. The 2018 American Head and Neck Society Presidential Address-Reflections. JAMA Otolaryngol Head Neck Surg. 2018 11 01; 144(11):1077-1080.
    View in: PubMed
    Score: 0.016
  19. Doxie DB, Greenplate AR, Gandelman JS, Diggins KE, Roe CE, Dahlman KB, Sosman JA, Kelley MC, Irish JM. BRAF and MEK inhibitor therapy eliminates Nestin-expressing melanoma cells in human tumors. Pigment Cell Melanoma Res. 2018 11; 31(6):708-719.
    View in: PubMed
    Score: 0.015
  20. Diggins KE, Gandelman JS, Roe CE, Irish JM. Generating Quantitative Cell Identity Labels with Marker Enrichment Modeling (MEM). Curr Protoc Cytom. 2018 01 18; 83:10.21.1-10.21.28.
    View in: PubMed
    Score: 0.015
  21. Irish J, Eskander A. The Importance and Challenges of a Specialty-Specific National Surgical Quality Improvement Program for Head and Neck Surgery. JAMA Otolaryngol Head Neck Surg. 2016 Apr; 142(4):328-9.
    View in: PubMed
    Score: 0.013
  22. Irish JC, Mills JN, Turner-Ivey B, Wilson RC, Guest ST, Rutkovsky A, Dombkowski A, Kappler CS, Hardiman G, Ethier SP. Amplification of WHSC1L1 regulates expression and estrogen-independent activation of ERa in SUM-44 breast cancer cells and is associated with ERa over-expression in breast cancer. Mol Oncol. 2016 06; 10(6):850-65.
    View in: PubMed
    Score: 0.013
  23. Haerle SK, Shiau C, Goldstein DP, Qiu X, Erovic BM, Ghazarian D, Xu W, Irish JC. Merkel cell carcinoma of the head and neck: potential histopathologic predictors. Laryngoscope. 2013 Dec; 123(12):3043-8.
    View in: PubMed
    Score: 0.011
  24. Dixon BJ, Daly MJ, Chan H, Vescan A, Witterick IJ, Irish JC. Augmented real-time navigation with critical structure proximity alerts for endoscopic skull base surgery. Laryngoscope. 2014 Apr; 124(4):853-9.
    View in: PubMed
    Score: 0.011
  25. Erovic BM, Daly MJ, Chan HH, James AL, Papsin BC, Pothier DD, Dixon B, Irish JC. Evaluation of intraoperative cone beam computed tomography and optical drill tracking in temporal bone surgery. Laryngoscope. 2013 Nov; 123(11):2823-8.
    View in: PubMed
    Score: 0.011
  26. Irish JM, Myklebust JH, Alizadeh AA, Houot R, Sharman JP, Czerwinski DK, Nolan GP, Levy R. B-cell signaling networks reveal a negative prognostic human lymphoma cell subset that emerges during tumor progression. Proc Natl Acad Sci U S A. 2010 Jul 20; 107(29):12747-54.
    View in: PubMed
    Score: 0.009
  27. Chan Y, Siewerdsen JH, Rafferty MA, Moseley DJ, Jaffray DA, Irish JC. Cone-beam computed tomography on a mobile C-arm: novel intraoperative imaging technology for guidance of head and neck surgery. J Otolaryngol Head Neck Surg. 2008 Feb; 37(1):81-90.
    View in: PubMed
    Score: 0.008
  28. Irish JM, Anensen N, Hovland R, Skavland J, B?rresen-Dale AL, Bruserud O, Nolan GP, Gjertsen BT. Flt3 Y591 duplication and Bcl-2 overexpression are detected in acute myeloid leukemia cells with high levels of phosphorylated wild-type p53. Blood. 2007 Mar 15; 109(6):2589-96.
    View in: PubMed
    Score: 0.007
  29. Irish JM, Czerwinski DK, Nolan GP, Levy R. Kinetics of B cell receptor signaling in human B cell subsets mapped by phosphospecific flow cytometry. J Immunol. 2006 Aug 01; 177(3):1581-9.
    View in: PubMed
    Score: 0.007
  30. Irish JM, Czerwinski DK, Nolan GP, Levy R. Altered B-cell receptor signaling kinetics distinguish human follicular lymphoma B cells from tumor-infiltrating nonmalignant B cells. Blood. 2006 Nov 01; 108(9):3135-42.
    View in: PubMed
    Score: 0.007
  31. Rafferty MA, Siewerdsen JH, Chan Y, Daly MJ, Moseley DJ, Jaffray DA, Irish JC. Intraoperative cone-beam CT for guidance of temporal bone surgery. Otolaryngol Head Neck Surg. 2006 May; 134(5):801-8.
    View in: PubMed
    Score: 0.007
  32. Irish JM, Kotecha N, Nolan GP. Mapping normal and cancer cell signalling networks: towards single-cell proteomics. Nat Rev Cancer. 2006 02; 6(2):146-55.
    View in: PubMed
    Score: 0.007
  33. Seyedi P, Aleman D, Baxter NN, Bell CM, Bodur M, Calzavara A, Campbell R, Carter M, de Jager P, Emerson SD, Irish J, Martin D, Lee S, Persitz J, Saxe-Braithwaite M, Takata J, Varkul O, Yang S, Zanchetta C, Urbach DR. Effect of single-entry referral models and team-based care on wait times for hip and knee joint replacement in Ontario: a simulation study. CMAJ. 2025 05 19; 197(19):E524-E531.
    View in: PubMed
    Score: 0.006
  34. Seyedi P, Aleman D, Baxter N, Bell C, Bodur M, Calzavara A, Campbell R, Carter M, de Jager P, Emerson S, Gagliardi A, Irish J, Martin D, Lee S, Saxe-Braithwaite M, Takata J, Yang S, Zanchetta C, Urbach D. Referral patterns for common surgical procedures in Ontario: a cross-sectional population-level study. Can J Surg. 2024 Nov-Dec; 67(6):E397-E405.
    View in: PubMed
    Score: 0.006
  35. Grewal K, Calzavara A, McLeod SL, Eskander A, Savage DW, Thompson C, Borgundvaag B, Ovens H, Cheskes S, de Wit K, Irish J, Krzyzanowska MK, Walsh R, Mohindra R, Thiruganasambandamoorthy V, Sutradhar R. Emergency department use before cancer diagnosis in Ontario, Canada: a population-based study. CMAJ. 2024 11 03; 196(37):E1252-E1261.
    View in: PubMed
    Score: 0.006
  36. M?kitie AA, Reis PP, Zhang T, Chin SF, Gullane P, Siu LL, Kamel-Reid S, Irish J. Epstein-Barr virus DNA measured in nasopharyngeal brushings in patients with nasopharyngeal carcinoma: pilot study. J Otolaryngol. 2004 Oct; 33(5):299-303.
    View in: PubMed
    Score: 0.006
  37. Campbell RJ, El-Defrawy SR, Bell CM, Urbach DR, Paterson JM, Stukel TA, Gill SS, Irish J, Baxter NN, Wilton AS, Gomez D. Public funding for private for-profit centres and access to cataract surgery by patient socioeconomic status: an Ontario population-based study. CMAJ. 2024 08 25; 196(28):E965-E972.
    View in: PubMed
    Score: 0.006
  38. Irish JM, Hovland R, Krutzik PO, Perez OD, Bruserud ?, Gjertsen BT, Nolan GP. Single cell profiling of potentiated phospho-protein networks in cancer cells. Cell. 2004 Jul 23; 118(2):217-28.
    View in: PubMed
    Score: 0.006
  39. Voss K, Bartkowiak T, Sewell AE, Chi C, Landis MD, Schaefer S, Pua HH, Connelly JA, Irish JM, Rathmell JC, Kaviany S. Peripheral T Cell Development and Immunophenotyping of Twins with Heterozygous FOXN1 Mutations. Immunohorizons. 2024 07 01; 8(7):492-499.
    View in: PubMed
    Score: 0.006
  40. Bewersdorf JP, Shallis RM, Sharon E, Park S, Ramaswamy R, Roe CE, Irish JM, Caldwell A, Wei W, Yacoub A, Madanat YF, Zeidner JF, Altman JK, Odenike O, Yerrabothala S, Kovacsovics T, Podoltsev NA, Halene S, Little RF, Piekarz R, Gore SD, Kim TK, Zeidan AM. A multicenter phase Ib trial of the histone deacetylase inhibitor entinostat in combination with pembrolizumab in patients with myelodysplastic syndromes/neoplasms or acute myeloid leukemia refractory to hypomethylating agents. Ann Hematol. 2024 Jan; 103(1):105-116.
    View in: PubMed
    Score: 0.006
  41. Norlander AE, Abney M, Cephus JY, Roe CE, Irish JM, Shelburne NJ, Newcomb DC, Hemnes AR, Peebles RS. Prostaglandin I2 Therapy Promotes Regulatory T Cell Generation in Patients with Pulmonary Arterial Hypertension. Am J Respir Crit Care Med. 2023 09 15; 208(6):737-739.
    View in: PubMed
    Score: 0.006
  42. Senosain MF, Zou Y, Patel K, Zhao S, Coullomb A, Rowe DJ, Lehman JM, Irish JM, Maldonado F, Kammer MN, Pancaldi V, Lopez CF. Integrated Multi-omics Analysis of Early Lung Adenocarcinoma Links Tumor Biological Features with Predicted Indolence or Aggressiveness. Cancer Res Commun. 2023 07; 3(7):1350-1365.
    View in: PubMed
    Score: 0.005
  43. Fu R, Sutradhar R, Li Q, Hanna TP, Chan KKW, Irish JC, Coburn N, Hallet J, Dare A, Singh S, Parmar A, Earle CC, Lapointe-Shaw L, Krzyzanowska MK, Finelli A, Louie AV, Look Hong NJ, Witterick IJ, Mahar A, Urbach DR, McIsaac DI, Enepekides D, Eskander A. Association between the COVID-19 pandemic and first cancer treatment modality: a population-based cohort study. CMAJ Open. 2023 May-Jun; 11(3):E426-E433.
    View in: PubMed
    Score: 0.005
  44. Brockman AA, Khurana R, Bartkowiak T, Thomas PL, Sivagnanam S, Betts CB, Coussens LM, Lovly CM, Irish JM, Ihrie RA. Alignment, segmentation and neighborhood analysis in cyclic immunohistochemistry data using CASSATT. Cytometry B Clin Cytom. 2023 09; 104(5):344-355.
    View in: PubMed
    Score: 0.005
  45. Noel CW, Hueniken K, Forner D, Liu G, Eng L, Hosni A, Hahn E, Irish JC, Gilbert R, Yao CMKL, Monteiro E, O'Sullivan B, Waldron J, Huang SH, Goldstein DP, de Almeida JR. Association of Household Income at Diagnosis With Financial Toxicity, Health Utility, and Survival in Patients With Head and Neck Cancer. JAMA Otolaryngol Head Neck Surg. 2023 01 01; 149(1):63-70.
    View in: PubMed
    Score: 0.005
  46. Huse K, Bai B, Hilden VI, Bollum LK, V?tsveen TK, Munthe LA, Smeland EB, Irish JM, W?lchli S, Myklebust JH. Mechanism of CD79A and CD79B Support for IgM+ B Cell Fitness through B Cell Receptor Surface Expression. J Immunol. 2022 11 15; 209(10):2042-2053.
    View in: PubMed
    Score: 0.005
  47. Balsamo JA, Penton KE, Zhao Z, Hayes MJ, Lima SM, Irish JM, Bachmann BO. An immunogenic cell injury module for the single-cell multiplexed activity metabolomics platform to identify promising anti-cancer natural products. J Biol Chem. 2022 09; 298(9):102300.
    View in: PubMed
    Score: 0.005
  48. Kaviany S, Bartkowiak T, Dulek DE, Khan YW, Hayes MJ, Schaefer SG, Ye X, Dahunsi DO, Connelly JA, Irish JM, Rathmell JC. Systems Immunology Analyses of STAT1 Gain-of-Function Immune Phenotypes Reveal Heterogeneous Response to IL-6 and Broad Immunometabolic Roles for STAT1. Immunohorizons. 2022 07 15; 6(7):447-464.
    View in: PubMed
    Score: 0.005
  49. Blasco MA, Noel CW, Truong T, Huang SH, Goldstein DP, Irish JC, Gilbert R, Hosni A, Hope A, O'Sullivan B, Waldron J, Perez-Ordonez B, Weinreb I, Smith SM, Bartlett E, Yu E, de Almeida JR. Radiologic-pathologic correlation of major versus minor extranodal extension in oral cavity cancer. Head Neck. 2022 06; 44(6):1422-1429.
    View in: PubMed
    Score: 0.005
  50. Parmar A, Eskander A, Sander B, Naimark D, Irish JC, Chan KKW. Impact of cancer surgery slowdowns on patient survival during the COVID-19 pandemic: a microsimulation modelling study. CMAJ. 2022 03 21; 194(11):E408-E414.
    View in: PubMed
    Score: 0.005
  51. Wilfong EM, Bartkowiak T, Vowell KN, Westlake CS, Irish JM, Kendall PL, Crofford LJ, Bonami RH. High-Dimensional Analysis Reveals Distinct Endotypes in Patients With Idiopathic Inflammatory Myopathies. Front Immunol. 2022; 13:756018.
    View in: PubMed
    Score: 0.005
  52. Dahm V, Chan HHL, Daly MJ, Lui JT, Lin VY, Irish J, Chen JM, Le TN. The Feasibility of Eustachian Tube Dilation With a Standard Endovascular Balloon: A Comparative Cadaver Study. Otol Neurotol. 2022 02 01; 43(2):256-262.
    View in: PubMed
    Score: 0.005
  53. Meghraoui-Kheddar A, Chousterman BG, Guillou N, Barone SM, Granjeaud S, Vallet H, Corneau A, Guessous K, de Roquetaillade C, Boissonnas A, Irish JM, Combadi?re C. Two New Neutrophil Subsets Define a Discriminating Sepsis Signature. Am J Respir Crit Care Med. 2022 01 01; 205(1):46-59.
    View in: PubMed
    Score: 0.005
  54. Yeh AC, Varelias A, Reddy A, Barone SM, Olver SD, Chilson K, Onstad LE, Ensbey KS, Henden AS, Samson L, Jaeger CA, Bi T, Dahlman KB, Kim TK, Zhang P, Degli-Esposti MA, Newell EW, Jagasia MH, Irish JM, Lee SJ, Hill GR. CMV exposure drives long-term CD57+ CD4 memory T-cell inflation following allogeneic stem cell transplant. Blood. 2021 12 30; 138(26):2874-2885.
    View in: PubMed
    Score: 0.005
  55. Le Gallou S, Lhomme F, Irish JM, Mingam A, Pangault C, Monvoisin C, Ferrant J, Azzaoui I, Rossille D, Bouabdallah K, Damaj G, Cartron G, Godmer P, Le Gouill S, Casasnovas RO, Molina TJ, Houot R, Lamy T, Tarte K, Fest T, Roussel M. Nonclassical Monocytes Are Prone to Migrate Into Tumor in Diffuse Large B-Cell Lymphoma. Front Immunol. 2021; 12:755623.
    View in: PubMed
    Score: 0.005
  56. Ramsey HE, Stengel K, Pino JC, Johnston G, Childress M, Gorska AE, Arrate PM, Fuller L, Villaume M, Fischer MA, Ferrell PB, Roe CE, Zou J, Lubbock ALR, Stubbs M, Zinkel S, Irish JM, Lopez CF, Hiebert S, Savona MR. Selective Inhibition of JAK1 Primes STAT5-Driven Human Leukemia Cells for ATRA-Induced Differentiation. Target Oncol. 2021 09; 16(5):663-674.
    View in: PubMed
    Score: 0.005
  57. Senosain MF, Zou Y, Novitskaya T, Vasiukov G, Balar AB, Rowe DJ, Doxie DB, Lehman JM, Eisenberg R, Maldonado F, Zijlstra A, Novitskiy SV, Irish JM, Massion PP. HLA-DR cancer cells expression correlates with T cell infiltration and is enriched in lung adenocarcinoma with indolent behavior. Sci Rep. 2021 Jul 13; 11(1):14424.
    View in: PubMed
    Score: 0.005
  58. Sahovaler A, Ziai H, Cardemil F, Huang SH, Su J, Goldstein DP, Gilbert R, Hosni A, Hope A, Waldron J, Spreafico A, Monteiro E, Witterick I, Irish J, Gullane P, Xu W, O'Sullivan B, de Almeida JR. Importance of Margins, Radiotherapy, and Systemic Therapy in Mucosal Melanoma of the Head and Neck. Laryngoscope. 2021 10; 131(10):2269-2276.
    View in: PubMed
    Score: 0.005
  59. Eskander A, Li Q, Hallet J, Coburn N, Hanna TP, Irish J, Sutradhar R. Access to Cancer Surgery in a Universal Health Care System During the COVID-19 Pandemic. JAMA Netw Open. 2021 03 01; 4(3):e211104.
    View in: PubMed
    Score: 0.005
  60. Healey DCC, Cephus JY, Barone SM, Chowdhury NU, Dahunsi DO, Madden MZ, Ye X, Yu X, Olszewski K, Young K, Gerriets VA, Siska PJ, Dworski R, Hemler J, Locasale JW, Poyurovsky MV, Peebles RS, Irish JM, Newcomb DC, Rathmell JC. Targeting In Vivo Metabolic Vulnerabilities of Th2 and Th17 Cells Reduces Airway Inflammation. J Immunol. 2021 03 15; 206(6):1127-1139.
    View in: PubMed
    Score: 0.005
  61. Ferrant J, Lhomme F, Le Gallou S, Irish JM, Roussel M. Circulating Myeloid Regulatory Cells: Promising Biomarkers in B-Cell Lymphomas. Front Immunol. 2020; 11:623993.
    View in: PubMed
    Score: 0.005
  62. Noel CW, Forner D, Wu V, Enepekides D, Irish JC, Husain Z, Chan KKW, Hallet J, Coburn N, Eskander A. Predictors of surgical readmission, unplanned hospitalization and emergency department use in head and neck oncology: A systematic review. Oral Oncol. 2020 12; 111:105039.
    View in: PubMed
    Score: 0.005
  63. Chattopadhyay PK, Filby A, Jellison ER, Ferrari G, Green C, Cherian S, Irish J, Litwin V. A Cytometrist's Guide to Coordinating and Performing Effective COVID-19 Research. Cytometry A. 2021 01; 99(1):11-18.
    View in: PubMed
    Score: 0.004
  64. Beckermann KE, Hongo R, Ye X, Young K, Carbonell K, Healey DCC, Siska PJ, Barone S, Roe CE, Smith CC, Vincent BG, Mason FM, Irish JM, Rathmell WK, Rathmell JC. CD28 costimulation drives tumor-infiltrating T cell glycolysis to promote inflammation. JCI Insight. 2020 08 20; 5(16).
    View in: PubMed
    Score: 0.004
  65. Lim SP, Costantini B, Mian SA, Perez Abellan P, Gandhi S, Martinez Llordella M, Lozano JJ, Antunes Dos Reis R, Povoleri GAM, Mourikis TP, Abarrategi A, Ariza-McNaughton L, Heck S, Irish JM, Lombardi G, Marsh JCW, Bonnet D, Kordasti S, Mufti GJ. Treg sensitivity to FasL and relative IL-2 deprivation drive idiopathic aplastic anemia immune dysfunction. Blood. 2020 08 13; 136(7):885-897.
    View in: PubMed
    Score: 0.004
  66. Czechowska K, Lannigan J, Aghaeepour N, Back JB, Begum J, Behbehani G, Bispo C, Bitoun D, Fern?ndez AB, Boova ST, Brinkman RR, Ciccolella CO, Cotleur B, Davies D, Dela Cruz GV, Del Rio-Guerra R, Des Lauriers-Cox AM, Douagi I, Dumrese C, Bonilla Escobar DL, Estevam J, Ewald C, Fossum A, Gaudilli?re B, Green C, Groves C, Hall C, Haque Y, Hedrick MN, Hogg K, Hsieh EWY, Irish J, Lederer J, Leipold M, Lewis-Tuffin LJ, Litwin V, Lopez P, Nasdala I, Nedbal J, Ohlsson-Wilhelm BM, Price KM, Rahman AH, Rayanki R, Rieger AM, Robinson JP, Shapiro H, Sun YS, Tang VA, Tesfa L, Telford WG, Walker R, Welsh JA, Wheeler P, T?rnok A. Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2019 Conference Workshops. Cytometry A. 2019 12; 95(12):1236-1274.
    View in: PubMed
    Score: 0.004
  67. de Almeida JR, Yao CMKL, Ziai H, Staibano P, Huang SH, Hosni A, Hope A, Bratman SV, Monteiro E, Gilbert RW, Brown DH, Gullane PJ, Irish JC, Su J, Xu W, Goldstein DP. Postoperative wound infections, neutrophil-to-lymphocyte ratio, and cancer recurrence in patients with oral cavity cancer undergoing surgical resection. Oral Oncol. 2019 10; 97:23-30.
    View in: PubMed
    Score: 0.004
  68. Rushing GV, Brockman AA, Bollig MK, Leelatian N, Mobley BC, Irish JM, Ess KC, Fu C, Ihrie RA. Location-dependent maintenance of intrinsic susceptibility to mTORC1-driven tumorigenesis. Life Sci Alliance. 2019 04; 2(2).
    View in: PubMed
    Score: 0.004
  69. Gandelman JS, Byrne MT, Mistry AM, Polikowsky HG, Diggins KE, Chen H, Lee SJ, Arora M, Cutler C, Flowers M, Pidala J, Irish JM, Jagasia MH. Machine learning reveals chronic graft-versus-host disease phenotypes and stratifies survival after stem cell transplant for hematologic malignancies. Haematologica. 2019 01; 104(1):189-196.
    View in: PubMed
    Score: 0.004
  70. Davies JC, Chan HHL, Bernstein JM, Goldstein DP, Irish JC, Gilbert RW. Orbital Floor Reconstruction: 3-Dimensional Analysis Shows Comparable Morphology of Scapular and Iliac Crest Bone Grafts. J Oral Maxillofac Surg. 2018 09; 76(9):2011-2018.
    View in: PubMed
    Score: 0.004
  71. Earl DC, Ferrell PB, Leelatian N, Froese JT, Reisman BJ, Irish JM, Bachmann BO. Discovery of human cell selective effector molecules using single cell multiplexed activity metabolomics. Nat Commun. 2018 01 02; 9(1):39.
    View in: PubMed
    Score: 0.004
  72. Josefsson SE, Huse K, Kolstad A, Beiske K, Pende D, Steen CB, Inderberg EM, Lingj?rde OC, ?stenstad B, Smeland EB, Levy R, Irish JM, Myklebust JH. T Cells Expressing Checkpoint Receptor TIGIT Are Enriched in Follicular Lymphoma Tumors and Characterized by Reversible Suppression of T-cell Receptor Signaling. Clin Cancer Res. 2018 02 15; 24(4):870-881.
    View in: PubMed
    Score: 0.004
  73. Tsang GFZ, Zhang H, Yao C, Kolarski M, Gullane PJ, Irish JC, Brown DH, Chepeha DB, Goldstein DP, Gilbert RW, de Almeida JR. Hardware complications in oromandibular defects: Comparing scapular and fibular based free flap reconstructions. Oral Oncol. 2017 08; 71:163-168.
    View in: PubMed
    Score: 0.004
  74. Yao CM, Ziai H, Tsang G, Copeland A, Brown D, Irish JC, Gilbert RW, Goldstein DP, Gullane PJ, de Almeida JR. Surgical site infections following oral cavity cancer resection and reconstruction is a risk factor for plate exposure. J Otolaryngol Head Neck Surg. 2017 Apr 08; 46(1):30.
    View in: PubMed
    Score: 0.004
  75. Nair N, Camacho-Vanegas O, Rykunov D, Dashkoff M, Camacho SC, Schumacher CA, Irish JC, Harkins TT, Freeman E, Garcia I, Pereira E, Kendall S, Belfer R, Kalir T, Sebra R, Reva B, Dottino P, Martignetti JA. Genomic Analysis of Uterine Lavage Fluid Detects Early Endometrial Cancers and Reveals a Prevalent Landscape of Driver Mutations in Women without Histopathologic Evidence of Cancer: A Prospective Cross-Sectional Study. PLoS Med. 2016 Dec; 13(12):e1002206.
    View in: PubMed
    Score: 0.003
  76. Myklebust JH, Brody J, Kohrt HE, Kolstad A, Czerwinski DK, W?lchli S, Green MR, Tr?en G, Liest?l K, Beiske K, Houot R, Delabie J, Alizadeh AA, Irish JM, Levy R. Distinct patterns of B-cell receptor signaling in non-Hodgkin lymphomas identified by single-cell profiling. Blood. 2017 02 09; 129(6):759-770.
    View in: PubMed
    Score: 0.003
  77. Erovic BM, Shah MD, Bruch G, Johnston M, Johnston U, Kim J, O'Sullivan B, Perez-Ordonez B, Weinreb I, Atenafu EG, de Almeida JR, Gullane PJ, Brown D, Gilbert RW, Irish JC, Goldstein DP. Outcome analysis of 215 patients with parotid gland tumors: a retrospective cohort analysis. J Otolaryngol Head Neck Surg. 2015 Oct 29; 44:43.
    View in: PubMed
    Score: 0.003
  78. Muhanna N, Cui L, Chan H, Burgess L, Jin CS, MacDonald TD, Huynh E, Wang F, Chen J, Irish JC, Zheng G. Multimodal Image-Guided Surgical and Photodynamic Interventions in Head and Neck Cancer: From Primary Tumor to Metastatic Drainage. Clin Cancer Res. 2016 Feb 15; 22(4):961-70.
    View in: PubMed
    Score: 0.003
  79. Bernardo MM, Kaplun A, Dzinic SH, Li X, Irish J, Mujagic A, Jakupovic B, Back JB, Van Buren E, Han X, Dean I, Chen YQ, Heath E, Sakr W, Sheng S. Maspin Expression in Prostate Tumor Cells Averts Stemness and Stratifies Drug Sensitivity. Cancer Res. 2015 Sep 15; 75(18):3970-9.
    View in: PubMed
    Score: 0.003
  80. Wang JR, Habbous S, Espin-Garcia O, Chen D, Huang SH, Simpson C, Xu W, Liu FF, Brown DH, Gilbert RW, Gullane PJ, Irish JC, Goldstein DP, Liu G. Comorbidity and performance status as independent prognostic factors in patients with head and neck squamous cell carcinoma. Head Neck. 2016 May; 38(5):736-42.
    View in: PubMed
    Score: 0.003
  81. Karr JR, Guturu H, Chen EY, Blair SL, Irish JM, Kotecha N, Covert MW. NetworkPainter: dynamic intracellular pathway animation in Cytobank. BMC Bioinformatics. 2015 May 25; 16:172.
    View in: PubMed
    Score: 0.003
  82. Fung-Kee-Fung M, Kennedy EB, Biagi J, Colgan T, D'Souza D, Elit LM, Hunter A, Irish J, McLeod R, Rosen B. An organizational guideline for gynecologic oncology services. Int J Gynecol Cancer. 2015 May; 25(4):551-8.
    View in: PubMed
    Score: 0.003
  83. Cui L, Lin Q, Jin CS, Jiang W, Huang H, Ding L, Muhanna N, Irish JC, Wang F, Chen J, Zheng G. A PEGylation-Free Biomimetic Porphyrin Nanoplatform for Personalized Cancer Theranostics. ACS Nano. 2015; 9(4):4484-95.
    View in: PubMed
    Score: 0.003
  84. Green MR, Kihira S, Liu CL, Nair RV, Salari R, Gentles AJ, Irish J, Stehr H, Vicente-Due?as C, Romero-Camarero I, Sanchez-Garcia I, Plevritis SK, Arber DA, Batzoglou S, Levy R, Alizadeh AA. Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation. Proc Natl Acad Sci U S A. 2015 Mar 10; 112(10):E1116-25.
    View in: PubMed
    Score: 0.003
  85. Sahgal A, Chan MW, Atenafu EG, Masson-Cote L, Bahl G, Yu E, Millar BA, Chung C, Catton C, O'Sullivan B, Irish JC, Gilbert R, Zadeh G, Cusimano M, Gentili F, Laperriere NJ. Image-guided, intensity-modulated radiation therapy (IG-IMRT) for skull base chordoma and chondrosarcoma: preliminary outcomes. Neuro Oncol. 2015 Jun; 17(6):889-94.
    View in: PubMed
    Score: 0.003
  86. Goldstein DP, Ringash J, Irish JC, Gilbert R, Gullane P, Brown D, Xu W, Del Bel R, Chepeha D, Davis AM. Assessment of the Disabilities of the Arm, Shoulder, and Hand (DASH) questionnaire for use in patients after neck dissection for head and neck cancer. Head Neck. 2015 Feb; 37(2):234-42.
    View in: PubMed
    Score: 0.003
  87. Pyne S, Lee SX, Wang K, Irish J, Tamayo P, Nazaire MD, Duong T, Ng SK, Hafler D, Levy R, Nolan GP, Mesirov J, McLachlan GJ. Joint modeling and registration of cell populations in cohorts of high-dimensional flow cytometric data. PLoS One. 2014; 9(7):e100334.
    View in: PubMed
    Score: 0.003
  88. Cervigne NK, Machado J, Goswami RS, Sadikovic B, Bradley G, Perez-Ordonez B, Galloni NN, Gilbert R, Gullane P, Irish JC, Jurisica I, Reis PP, Kamel-Reid S. Recurrent genomic alterations in sequential progressive leukoplakia and oral cancer: drivers of oral tumorigenesis? Hum Mol Genet. 2014 May 15; 23(10):2618-28.
    View in: PubMed
    Score: 0.003
  89. Hui AB, Lin A, Xu W, Waldron L, Perez-Ordonez B, Weinreb I, Shi W, Bruce J, Huang SH, O'Sullivan B, Waldron J, Gullane P, Irish JC, Chan K, Liu FF. Potentially prognostic miRNAs in HPV-associated oropharyngeal carcinoma. Clin Cancer Res. 2013 Apr 15; 19(8):2154-62.
    View in: PubMed
    Score: 0.003
  90. Green MR, Gentles AJ, Nair RV, Irish JM, Kihira S, Liu CL, Kela I, Hopmans ES, Myklebust JH, Ji H, Plevritis SK, Levy R, Alizadeh AA. Hierarchy in somatic mutations arising during genomic evolution and progression of follicular lymphoma. Blood. 2013 Feb 28; 121(9):1604-11.
    View in: PubMed
    Score: 0.003
  91. Myklebust JH, Irish JM, Brody J, Czerwinski DK, Houot R, Kohrt HE, Timmerman J, Said J, Green MR, Delabie J, Kolstad A, Alizadeh AA, Levy R. High PD-1 expression and suppressed cytokine signaling distinguish T cells infiltrating follicular lymphoma tumors from peripheral T cells. Blood. 2013 Feb 21; 121(8):1367-76.
    View in: PubMed
    Score: 0.003
  92. Irish JC, Bernstein A. Oncogenes in head and neck cancer. Laryngoscope. 1993 Jan; 103(1 Pt 1):42-52.
    View in: PubMed
    Score: 0.003
  93. Erovic BM, Kim D, Cassol C, Goldstein DP, Irish JC, Asa SL, Mete O. Prognostic and predictive markers in medullary thyroid carcinoma. Endocr Pathol. 2012 Dec; 23(4):232-42.
    View in: PubMed
    Score: 0.003
  94. Sepiashvili L, Hui A, Ignatchenko V, Shi W, Su S, Xu W, Huang SH, O'Sullivan B, Waldron J, Irish JC, Perez-Ordonez B, Liu FF, Kislinger T. Potentially novel candidate biomarkers for head and neck squamous cell carcinoma identified using an integrated cell line-based discovery strategy. Mol Cell Proteomics. 2012 Nov; 11(11):1404-15.
    View in: PubMed
    Score: 0.003
  95. Pagedar NA, Gilbert RW, Chan H, Daly MJ, Irish JC, Siewerdsen JH. Maxillary reconstruction using the scapular tip free flap: a radiologic comparison of 3D morphology. Head Neck. 2012 Oct; 34(10):1377-82.
    View in: PubMed
    Score: 0.002
  96. Bachar G, Hod R, Goldstein DP, Irish JC, Gullane PJ, Brown D, Gilbert RW, Hadar T, Feinmesser R, Shpitzer T. Outcome of oral tongue squamous cell carcinoma in patients with and without known risk factors. Oral Oncol. 2011 Jan; 47(1):45-50.
    View in: PubMed
    Score: 0.002
  97. Shah MD, Goldstein DP, McCluskey SA, Miles BA, Hofer SO, Hofer S, Brown DH, Irish JC, Gullane PJ, Gilbert RW. Blood transfusion prediction in patients undergoing major head and neck surgery with free-flap reconstruction. Arch Otolaryngol Head Neck Surg. 2010 Dec; 136(12):1199-204.
    View in: PubMed
    Score: 0.002
  98. Patel RS, Goldstein DP, Guillemaud J, Bruch GA, Brown D, Gilbert RW, Gullane PJ, Higgins KM, Irish J, Enepekides DJ. Impact of positive frozen section microscopic tumor cut-through revised to negative on oral carcinoma control and survival rates. Head Neck. 2010 Nov; 32(11):1444-51.
    View in: PubMed
    Score: 0.002
  99. Huang SH, Perez-Ordonez B, Liu FF, Waldron J, Ringash J, Irish J, Cummings B, Siu LL, Kim J, Weinreb I, Hope A, Gullane P, Brown D, Shi W, O'Sullivan B. Atypical clinical behavior of p16-confirmed HPV-related oropharyngeal squamous cell carcinoma treated with radical radiotherapy. Int J Radiat Oncol Biol Phys. 2012 Jan 01; 82(1):276-83.
    View in: PubMed
    Score: 0.002
  100. van Driel AA, Mureau MAM, Goldstein DP, Gilbert RW, Irish JC, Gullane PJ, Neligan PC, Hofer SOP. Aesthetic and oncologic outcome after microsurgical reconstruction of complex scalp and forehead defects after malignant tumor resection: an algorithm for treatment. Plast Reconstr Surg. 2010 Aug; 126(2):460-470.
    View in: PubMed
    Score: 0.002
  101. Shrime MG, Gullane PJ, Dawson L, Kim J, Gilbert RW, Irish JC, Brown DH, Goldstein DP. The impact of adjuvant radiotherapy on survival in T1-2N1 squamous cell carcinoma of the oral cavity. Arch Otolaryngol Head Neck Surg. 2010 Mar; 136(3):225-8.
    View in: PubMed
    Score: 0.002
  102. Houot R, Goldstein MJ, Kohrt HE, Myklebust JH, Alizadeh AA, Lin JT, Irish JM, Torchia JA, Kolstad A, Chen L, Levy R. Therapeutic effect of CD137 immunomodulation in lymphoma and its enhancement by Treg depletion. Blood. 2009 Oct 15; 114(16):3431-8.
    View in: PubMed
    Score: 0.002
  103. Barker E, Trimble K, Chan H, Ramsden J, Nithiananthan S, James A, Bachar G, Daly M, Irish J, Siewerdsen J. Intraoperative use of cone-beam computed tomography in a cadaveric ossified cochlea model. Otolaryngol Head Neck Surg. 2009 May; 140(5):697-702.
    View in: PubMed
    Score: 0.002
  104. Hammer MM, Kotecha N, Irish JM, Nolan GP, Krutzik PO. WebFlow: a software package for high-throughput analysis of flow cytometry data. Assay Drug Dev Technol. 2009 Feb; 7(1):44-55.
    View in: PubMed
    Score: 0.002
  105. Sachs K, Gentles AJ, Youland R, Itani S, Irish J, Nolan GP, Plevritis SK. Characterization of patient specific signaling via augmentation of Bayesian networks with disease and patient state nodes. Annu Int Conf IEEE Eng Med Biol Soc. 2009; 2009:6624-7.
    View in: PubMed
    Score: 0.002
  106. Kotecha N, Flores NJ, Irish JM, Simonds EF, Sakai DS, Archambeault S, Diaz-Flores E, Coram M, Shannon KM, Nolan GP, Loh ML. Single-cell profiling identifies aberrant STAT5 activation in myeloid malignancies with specific clinical and biologic correlates. Cancer Cell. 2008 Oct 07; 14(4):335-43.
    View in: PubMed
    Score: 0.002
  107. Nithiananthan S, Brock KK, Irish JC, Siewerdsen JH. Deformable registration for intra-operative cone-beam CT guidance of head and neck surgery. Annu Int Conf IEEE Eng Med Biol Soc. 2008; 2008:3634-7.
    View in: PubMed
    Score: 0.002
  108. Hamming NM, Daly MJ, Irish JC, Siewerdsen JH. Effect of fiducial configuration on target registration error in intraoperative cone-beam CT guidance of head and neck surgery. Annu Int Conf IEEE Eng Med Biol Soc. 2008; 2008:3643-8.
    View in: PubMed
    Score: 0.002
  109. Calvo E, Malik SN, Siu LL, Baillargeon GM, Irish J, Chin SF, Santabarbara P, Kreisberg JI, Rowinsky EK, Hidalgo M. Assessment of erlotinib pharmacodynamics in tumors and skin of patients with head and neck cancer. Ann Oncol. 2007 Apr; 18(4):761-7.
    View in: PubMed
    Score: 0.002
  110. Knox JJ, Siu LL, Chen E, Dimitroulakos J, Kamel-Reid S, Moore MJ, Chin S, Irish J, LaFramboise S, Oza AM. A Phase I trial of prolonged administration of lovastatin in patients with recurrent or metastatic squamous cell carcinoma of the head and neck or of the cervix. Eur J Cancer. 2005 Mar; 41(4):523-30.
    View in: PubMed
    Score: 0.002
  111. Krutzik PO, Irish JM, Nolan GP, Perez OD. Analysis of protein phosphorylation and cellular signaling events by flow cytometry: techniques and clinical applications. Clin Immunol. 2004 Mar; 110(3):206-21.
    View in: PubMed
    Score: 0.001
  112. M?kitie AA, MacMillan C, Ho J, Shi W, Lee A, O'Sullivan B, Payne D, Pintilie M, Cummings B, Waldron J, Warde P, Irish J, Brown D, Gilbert R, Gullane P, Liu FF, Kamel-Reid S. Loss of p16 expression has prognostic significance in human nasopharyngeal carcinoma. Clin Cancer Res. 2003 Jun; 9(6):2177-84.
    View in: PubMed
    Score: 0.001
  113. Groome PA, Schulze K, Boysen M, Hall SF, Mackillop WJ, O'Sullivan B, Irish JC, Warde PR, Schneider KM, Mackenzie RG, Hodson DI, Hammond JA, Gulavita SP, Eapen LJ, Dixon PF, Bissett RJ. A comparison of published head and neck stage groupings in laryngeal cancer using data from two countries. J Clin Epidemiol. 2002 Jun; 55(6):533-44.
    View in: PubMed
    Score: 0.001
  114. Khoo ML, Freeman JL, Witterick IJ, Irish JC, Rotstein LE, Gullane PJ, Asa SL. Underexpression of p27/Kip in thyroid papillary microcarcinomas with gross metastatic disease. Arch Otolaryngol Head Neck Surg. 2002 Mar; 128(3):253-7.
    View in: PubMed
    Score: 0.001
  115. Lueg EA, Irish JC, Katz MR, Brown DH, Gullane PJ. A patient- and observer-rated analysis of the impact of lateral rhinotomy on facial aesthetics. Arch Facial Plast Surg. 2001 Oct-Dec; 3(4):241-4.
    View in: PubMed
    Score: 0.001
  116. Wang Y, Irish J, MacMillan C, Brown D, Xuan Y, Boyington C, Gullane P, Kamel-Reid S. High frequency of microsatellite instability in young patients with head-and-neck squamous-cell carcinoma: lack of involvement of the mismatch repair genes hMLH1 AND hMSH2. Int J Cancer. 2001 Aug 01; 93(3):353-60.
    View in: PubMed
    Score: 0.001
  117. Curran AJ, Gullane PJ, Irish J, Macmillan C, Freeman J, Kamel-Reid S. Telomerase activity is upregulated in laryngeal squamous cell carcinoma. Laryngoscope. 2000 Mar; 110(3 Pt 1):391-6.
    View in: PubMed
    Score: 0.001
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