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Connection

James Costello to Algorithms

This is a "connection" page, showing publications James Costello has written about Algorithms.

 
Connection Strength
 
 
 
1.357
 
  1. Ross BC, Costello JC. Improved inference of chromosome conformation from images of labeled loci. F1000Res. 2018; 7.
    View in: PubMed
    Score: 0.389
  2. Powers RK, Goodspeed A, Pielke-Lombardo H, Tan AC, Costello JC. GSEA-InContext: identifying novel and common patterns in expression experiments. Bioinformatics. 2018 07 01; 34(13):i555-i564.
    View in: PubMed
    Score: 0.383
  3. Costello JC, Schrider D, Gehlhausen J, Dalkilic M. Data-driven ontologies. Pac Symp Biocomput. 2009; 15-26.
    View in: PubMed
    Score: 0.198
  4. Ross BC, Boguslav M, Weeks H, Costello JC. Simulating heterogeneous populations using Boolean models. BMC Syst Biol. 2018 06 07; 12(1):64.
    View in: PubMed
    Score: 0.095
  5. Costello JC, Heiser LM, Georgii E, G?nen M, Menden MP, Wang NJ, Bansal M, Ammad-ud-din M, Hintsanen P, Khan SA, Mpindi JP, Kallioniemi O, Honkela A, Aittokallio T, Wennerberg K, Collins JJ, Gallahan D, Singer D, Saez-Rodriguez J, Kaski S, Gray JW, Stolovitzky G. A community effort to assess and improve drug sensitivity prediction algorithms. Nat Biotechnol. 2014 Dec; 32(12):1202-12.
    View in: PubMed
    Score: 0.072
  6. Costello JC, Stolovitzky G. Seeking the wisdom of crowds through challenge-based competitions in biomedical research. Clin Pharmacol Ther. 2013 May; 93(5):396-8.
    View in: PubMed
    Score: 0.066
  7. Costello JC, Dalkilic MM, Beason SM, Gehlhausen JR, Patwardhan R, Middha S, Eads BD, Andrews JR. Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function. Genome Biol. 2009; 10(9):R97.
    View in: PubMed
    Score: 0.052
  8. Camacho DM, Collins KM, Powers RK, Costello JC, Collins JJ. Next-Generation Machine Learning for Biological Networks. Cell. 2018 06 14; 173(7):1581-1592.
    View in: PubMed
    Score: 0.024
  9. Bansal M, Yang J, Karan C, Menden MP, Costello JC, Tang H, Xiao G, Li Y, Allen J, Zhong R, Chen B, Kim M, Wang T, Heiser LM, Realubit R, Mattioli M, Alvarez MJ, Shen Y, Gallahan D, Singer D, Saez-Rodriguez J, Xie Y, Stolovitzky G, Califano A. A community computational challenge to predict the activity of pairs of compounds. Nat Biotechnol. 2014 Dec; 32(12):1213-22.
    View in: PubMed
    Score: 0.019
  10. Xue R, Zakharov MN, Xia Y, Bhasin S, Costello JC, Jasuja R. Research resource: EPSLiM: ensemble predictor for short linear motifs in nuclear hormone receptors. Mol Endocrinol. 2014 May; 28(5):768-77.
    View in: PubMed
    Score: 0.018
  11. Marbach D, Costello JC, K?ffner R, Vega NM, Prill RJ, Camacho DM, Allison KR, Kellis M, Collins JJ, Stolovitzky G. Wisdom of crowds for robust gene network inference. Nat Methods. 2012 Jul 15; 9(8):796-804.
    View in: PubMed
    Score: 0.016
  12. Schrider DR, Costello JC, Hahn MW. All human-specific gene losses are present in the genome as pseudogenes. J Comput Biol. 2009 Oct; 16(10):1419-27.
    View in: PubMed
    Score: 0.013
  13. Dalkilic MM, Costello JC, Clark WT, Radivojac P. From protein-disease associations to disease informatics. Front Biosci. 2008 May 01; 13:3391-407.
    View in: PubMed
    Score: 0.012
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.

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