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Connection

David Nesbitt to Nucleic Acid Conformation

This is a "connection" page, showing publications David Nesbitt has written about Nucleic Acid Conformation.

 
Connection Strength
  
 
 
5.138
  
  1. Sung HL, Nesbitt DJ. Single-Molecule FRET Kinetics of the Mn2+ Riboswitch: Evidence for Allosteric Mg2+ Control of "Induced-Fit" vs "Conformational Selection" Folding Pathways. J Phys Chem B. 2019 03 07; 123(9):2005-2015.
    View in: PubMed
    Score: 0.477
  2. Vieweger M, Nesbitt DJ. Synergistic SHAPE/Single-Molecule Deconvolution of RNA Conformation under Physiological Conditions. Biophys J. 2018 04 24; 114(8):1762-1775.
    View in: PubMed
    Score: 0.450
  3. Holmstrom ED, Dupuis NF, Nesbitt DJ. Kinetic and thermodynamic origins of osmolyte-influenced nucleic acid folding. J Phys Chem B. 2015 Mar 05; 119(9):3687-96.
    View in: PubMed
    Score: 0.361
  4. Dupuis NF, Holmstrom ED, Nesbitt DJ. Molecular-crowding effects on single-molecule RNA folding/unfolding thermodynamics and kinetics. Proc Natl Acad Sci U S A. 2014 Jun 10; 111(23):8464-9.
    View in: PubMed
    Score: 0.342
  5. Fiegland LR, Garst AD, Batey RT, Nesbitt DJ. Single-molecule studies of the lysine riboswitch reveal effector-dependent conformational dynamics of the aptamer domain. Biochemistry. 2012 Nov 13; 51(45):9223-33.
    View in: PubMed
    Score: 0.307
  6. Fiore JL, Holmstrom ED, Fiegland LR, Hodak JH, Nesbitt DJ. The role of counterion valence and size in GAAA tetraloop-receptor docking/undocking kinetics. J Mol Biol. 2012 Oct 19; 423(2):198-216.
    View in: PubMed
    Score: 0.301
  7. Fiore JL, Hodak JH, Piestert O, Downey CD, Nesbitt DJ. Monovalent and divalent promoted GAAA tetraloop-receptor tertiary interactions from freely diffusing single-molecule studies. Biophys J. 2008 Oct; 95(8):3892-905.
    View in: PubMed
    Score: 0.228
  8. Hodak JH, Downey CD, Fiore JL, Pardi A, Nesbitt DJ. Docking kinetics and equilibrium of a GAAA tetraloop-receptor motif probed by single-molecule FRET. Proc Natl Acad Sci U S A. 2005 Jul 26; 102(30):10505-10.
    View in: PubMed
    Score: 0.185
  9. Sung HL, Nesbitt DJ. Two-dimensional (P/T) studies of secondary/tertiary conformational dynamics in nucleic acids: pressure induced melting and Maxwell relations at the single molecule level. Phys Chem Chem Phys. 2025 Mar 06; 27(10):5285-5295.
    View in: PubMed
    Score: 0.181
  10. Marton Menendez A, Nesbitt DJ. Thermodynamic compensation to temperature extremes in B. subtilis vs T. maritima lysine riboswitches. Biophys J. 2024 10 01; 123(19):3331-3345.
    View in: PubMed
    Score: 0.174
  11. Nicholson DA, Nesbitt DJ. Kinetic and Thermodynamic Control of G-Quadruplex Polymorphism by Na+ and K+ Cations. J Phys Chem B. 2023 08 10; 127(31):6842-6855.
    View in: PubMed
    Score: 0.162
  12. Marton Menendez A, Nesbitt DJ. Ionic Cooperativity between Lysine and Potassium in the Lysine Riboswitch: Single-Molecule Kinetic and Thermodynamic Studies. J Phys Chem B. 2023 03 23; 127(11):2430-2440.
    View in: PubMed
    Score: 0.158
  13. Sung HL, Nesbitt DJ. Synergism in the Molecular Crowding of Ligand-Induced Riboswitch Folding: Kinetic/Thermodynamic Insights from Single-Molecule Spectroscopy. J Phys Chem B. 2022 09 01; 126(34):6419-6427.
    View in: PubMed
    Score: 0.152
  14. Marton Menendez A, Nesbitt DJ. Lysine-Dependent Entropy Effects in the B. subtilis Lysine Riboswitch: Insights from Single-Molecule Thermodynamic Studies. J Phys Chem B. 2022 01 13; 126(1):69-79.
    View in: PubMed
    Score: 0.145
  15. Nicholson DA, Sengupta A, Nesbitt DJ. Chirality-Dependent Amino Acid Modulation of RNA Folding. J Phys Chem B. 2020 12 24; 124(51):11561-11572.
    View in: PubMed
    Score: 0.135
  16. Sung HL, Nesbitt DJ. Single-molecule kinetic studies of DNA hybridization under extreme pressures. Phys Chem Chem Phys. 2020 Nov 07; 22(41):23491-23501.
    View in: PubMed
    Score: 0.134
  17. Sung HL, Nesbitt DJ. Sequential Folding of the Nickel/Cobalt Riboswitch Is Facilitated by a Conformational Intermediate: Insights from Single-Molecule Kinetics and Thermodynamics. J Phys Chem B. 2020 08 27; 124(34):7348-7360.
    View in: PubMed
    Score: 0.132
  18. Sung HL, Nesbitt DJ. High pressure single-molecule FRET studies of the lysine riboswitch: cationic and osmolytic effects on pressure induced denaturation. Phys Chem Chem Phys. 2020 Jul 22; 22(28):15853-15866.
    View in: PubMed
    Score: 0.131
  19. Sung HL, Nesbitt DJ. DNA Hairpin Hybridization under Extreme Pressures: A Single-Molecule FRET Study. J Phys Chem B. 2020 01 09; 124(1):110-120.
    View in: PubMed
    Score: 0.126
  20. Sung HL, Nesbitt DJ. Novel Heat-Promoted Folding Dynamics of the yybP-ykoY Manganese Riboswitch: Kinetic and Thermodynamic Studies at the Single-Molecule Level. J Phys Chem B. 2019 07 05; 123(26):5412-5422.
    View in: PubMed
    Score: 0.122
  21. Nicholson DA, Sengupta A, Sung HL, Nesbitt DJ. Amino Acid Stabilization of Nucleic Acid Secondary Structure: Kinetic Insights from Single-Molecule Studies. J Phys Chem B. 2018 11 01; 122(43):9869-9876.
    View in: PubMed
    Score: 0.116
  22. Dupuis NF, Holmstrom ED, Nesbitt DJ. Tests of Kramers' Theory at the Single-Molecule Level: Evidence for Folding of an Isolated RNA Tertiary Interaction at the Viscous Speed Limit. J Phys Chem B. 2018 09 27; 122(38):8796-8804.
    View in: PubMed
    Score: 0.116
  23. Holmstrom ED, Nesbitt DJ. Biophysical Insights from Temperature-Dependent Single-Molecule Förster Resonance Energy Transfer. Annu Rev Phys Chem. 2016 05 27; 67:441-65.
    View in: PubMed
    Score: 0.098
  24. Vieweger M, Holmstrom ED, Nesbitt DJ. Single-Molecule FRET Reveals Three Conformations for the TLS Domain of Brome Mosaic Virus Genome. Biophys J. 2015 Dec 15; 109(12):2625-2636.
    View in: PubMed
    Score: 0.095
  25. Fiore JL, Nesbitt DJ. An RNA folding motif: GNRA tetraloop-receptor interactions. Q Rev Biophys. 2013 Aug; 46(3):223-64.
    View in: PubMed
    Score: 0.081
  26. Fiore JL, Holmstrom ED, Nesbitt DJ. Entropic origin of Mg2+-facilitated RNA folding. Proc Natl Acad Sci U S A. 2012 Feb 21; 109(8):2902-7.
    View in: PubMed
    Score: 0.073
  27. Fiore JL, Kraemer B, Koberling F, Edmann R, Nesbitt DJ. Enthalpy-driven RNA folding: single-molecule thermodynamics of tetraloop-receptor tertiary interaction. Biochemistry. 2009 Mar 24; 48(11):2550-8.
    View in: PubMed
    Score: 0.060
  28. Downey CD, Fiore JL, Stoddard CD, Hodak JH, Nesbitt DJ, Pardi A. Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker. Biochemistry. 2006 Mar 21; 45(11):3664-73.
    View in: PubMed
    Score: 0.049
  29. Polaski JT, Holmstrom ED, Nesbitt DJ, Batey RT. Mechanistic Insights into Cofactor-Dependent Coupling of RNA Folding and mRNA Transcription/Translation by a Cobalamin Riboswitch. Cell Rep. 2016 05 03; 15(5):1100-1110.
    View in: PubMed
    Score: 0.024
  30. Liu Y, Holmstrom E, Zhang J, Yu P, Wang J, Dyba MA, Chen D, Ying J, Lockett S, Nesbitt DJ, Ferré-D'Amaré AR, Sousa R, Stagno JR, Wang YX. Synthesis and applications of RNAs with position-selective labelling and mosaic composition. Nature. 2015 Jun 18; 522(7556):368-72.
    View in: PubMed
    Score: 0.023
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.

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