 Connection
Shelley Copley to Escherichia coli
This is a "connection" page, showing publications Shelley Copley has written about Escherichia coli.
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Connection Strength |
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5.691 |
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Widney KA, Phillips LC, Rusch LM, Copley SD. Mutations Elevate an Underground Pathway to a Physiologically Relevant Protopathway. Mol Biol Evol. 2025 Jul 30; 42(8).
Score: 0.666
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Fritts RK, Ebmeier CC, Copley SD. Transcriptomic and proteomic ramifications of segmental amplification in Escherichia coli. Proc Natl Acad Sci U S A. 2025 May 20; 122(20):e2422424122.
Score: 0.657
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Newton MS, Azadeh AL, Morgenthaler AB, Copley SD. Challenging a decades-old paradigm: ProB and ProA do not channel the unstable intermediate in proline synthesis after all. Proc Natl Acad Sci U S A. 2024 Nov 12; 121(46):e2413673121.
Score: 0.634
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Yang DD, Rusch LM, Widney KA, Morgenthaler AB, Copley SD. Synonymous edits in the Escherichia coli genome have substantial and condition-dependent effects on fitness. Proc Natl Acad Sci U S A. 2024 Jan 30; 121(5):e2316834121.
Score: 0.600
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Copley SD, Newton MS, Widney KA. How to Recruit a Promiscuous Enzyme to Serve a New Function. Biochemistry. 2023 01 17; 62(2):300-308.
Score: 0.537
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Morgenthaler AB, Kinney WR, Ebmeier CC, Walsh CM, Snyder DJ, Cooper VS, Old WM, Copley SD. Mutations that improve efficiency of a weak-link enzyme are rare compared to adaptive mutations elsewhere in the genome. Elife. 2019 12 09; 8.
Score: 0.451
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Kim J, Flood JJ, Kristofich MR, Gidfar C, Morgenthaler AB, Fuhrer T, Sauer U, Snyder D, Cooper VS, Ebmeier CC, Old WM, Copley SD. Hidden resources in the Escherichia coli genome restore PLP synthesis and robust growth after deletion of the essential gene pdxB. Proc Natl Acad Sci U S A. 2019 11 26; 116(48):24164-24173.
Score: 0.448
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Kershner JP, Yu McLoughlin S, Kim J, Morgenthaler A, Ebmeier CC, Old WM, Copley SD. A Synonymous Mutation Upstream of the Gene Encoding a Weak-Link Enzyme Causes an Ultrasensitive Response in Growth Rate. J Bacteriol. 2016 10 15; 198(20):2853-63.
Score: 0.361
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Kim J, Webb AM, Kershner JP, Blaskowski S, Copley SD. A versatile and highly efficient method for scarless genome editing in Escherichia coli and Salmonella enterica. BMC Biotechnol. 2014 Sep 25; 14:84.
Score: 0.314
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Kim J, Copley SD. Inhibitory cross-talk upon introduction of a new metabolic pathway into an existing metabolic network. Proc Natl Acad Sci U S A. 2012 Oct 16; 109(42):E2856-64.
Score: 0.273
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Kim J, Kershner JP, Novikov Y, Shoemaker RK, Copley SD. Three serendipitous pathways in E. coli can bypass a block in pyridoxal-5'-phosphate synthesis. Mol Syst Biol. 2010 Nov 30; 6:436.
Score: 0.241
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Dai M, Ziesman S, Ratcliffe T, Gill RT, Copley SD. Visualization of protoplast fusion and quantitation of recombination in fused protoplasts of auxotrophic strains of Escherichia coli. Metab Eng. 2005 Jan; 7(1):45-52.
Score: 0.160
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Choudhury A, Fankhauser RG, Freed EF, Oh EJ, Morgenthaler AB, Bassalo MC, Copley SD, Kaar JL, Gill RT. Determinants for Efficient Editing with Cas9-Mediated Recombineering in Escherichia coli. ACS Synth Biol. 2020 May 15; 9(5):1083-1099.
Score: 0.116
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McCarthy DL, Claude AA, Copley SD. In vivo levels of chlorinated hydroquinones in a pentachlorophenol-degrading bacterium. Appl Environ Microbiol. 1997 May; 63(5):1883-8.
Score: 0.094
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Kim J, Copley SD. The orphan protein bis-?-glutamylcystine reductase joins the pyridine nucleotide disulfide reductase family. Biochemistry. 2013 Apr 30; 52(17):2905-13.
Score: 0.071
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McLoughlin SY, Copley SD. A compromise required by gene sharing enables survival: Implications for evolution of new enzyme activities. Proc Natl Acad Sci U S A. 2008 Sep 09; 105(36):13497-502.
Score: 0.052
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Copley SD, Frank E, Kirsch WM, Koch TH. Detection and possible origins of aminomalonic acid in protein hydrolysates. Anal Biochem. 1992 Feb 14; 201(1):152-7.
Score: 0.016
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Connection Strength
The connection strength for concepts is the sum of the scores for each matching publication.
Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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