DavidPollockDavid Pollock39.74389450000000-104.839435200000002481Pollock, David303/724-3234Professorprns:coAuthorOfcoauthor ofprns:endDateend dateFaculty Rankprns:fullNamefull nameprns:grantAwardedBygrant awarded byprns:hasAuthorListauthor listprns:hasFacultyRankhas faculty rankprns:hasNetworkhas networkprns:hasPublicationVenuepublished inprns:informationResourceReferenceinformation resource referenceprns:isPrimaryPositionis primary positionprns:latitudelatitudeprns:longitudelongitudeprns:maxWeightmaximum weightprns:medlineTAjournal title abbreviationprns:meshDescriptorUIMeSH DescriptorUIprns:meshSemanticGroupNameMeSH semantic group nameprns:minWeightminimum weightprns:numberOfAuthorsnumber of authorsprns:numberOfConnectionsnumber of connectionsprns:numberOfPublicationsnumber of publicationsprns:personIdPerson IDprns:personInPrimaryPositionperson in primary positionprns:physicalNeighborOfphysical neighborprns:positionInDepartmentposition in departmentprns:positionInDivisionposition in divisionprns:predicateNodepredicate nodeprns:principalInvestigatorNameprincipal investigator nameprns:publicationDatepublication dateprns:similarTosimilar toprns:sortOrdersort orderprns:startDatestart dateprns:uniquenessWeightuniqueness weightprns:yearyearAcademic ArticleArticleDocumentbibo:pmidPubMed IdentifierAddressvivo:address1address line 1vivo:address2address line 2vivo:address3address line 3vivo:addressCitycityvivo:addressPostalCodepostal codevivo:addressStatestate or provinceAgreementvivo:authorInAuthorshipselected publicationsvivo:authorRankauthor rank in publicationAuthorshipDepartmentDivisionGrantvivo:hasResearchArearesearch areasvivo:hasResearcherRoleresearch activitiesvivo:hrJobTitleHR job titleInformation Resourcevivo:linkedAuthorlinked authorvivo:linkedInformationResourcelinked information resourcevivo:mailingAddressmailing addressvivo:personInPositionpositionsvivo:phoneNumberphonePositionvivo:positionInOrganizationposition in organizationvivo:preferredTitlepreferred titleResearcher Rolevivo:researcherRoleOfresearcher role ofRolevivo:roleContributesTocontributes tovivo:sponsorAwardIdsponsor award idrdf:predicatepredicaterdf:typetyperdfs:labellabelConceptAgentfoaf:firstNamefirst namefoaf:lastNamelast nameOrganizationPersonAuthorship 824914Authorship 828934Authorship 8450713Authorship 1184964125504731Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Guti?rrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, Caballero J, Hubley RM, Smit AF, Platt RN, Lavoie CA, Ramakodi MP, Finger JW, Suh A, Isberg SR, Miles L, Chong AY, Jaratlerdsiri W, Gongora J, Moran C, Iriarte A, McCormack J, Burgess SC, Edwards SV, Lyons E, Williams C, Breen M, Howard JT, Gresham CR, Peterson DG, Schmitz J, Pollock DD, Haussler D, Triplett EW, Zhang G, Irie N, Jarvis ED, Brochu CA, Schmidt CJ, McCarthy FM, Faircloth BC, Hoffmann FG, Glenn TC, Gabald?n T, Paten B, Ray DAScience (New York, N.Y.)Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Guti?rrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, Caballero J, Hubley RM, Smit AF, Platt RN, Lavoie CA, Ramakodi MP, Finger JW, Suh A, Isberg SR, Miles L, Chong AY, Jaratlerdsiri W, Gongora J, Moran C, Iriarte A, McCormack J, Burgess SC, Edwards SV, Lyons E, Williams C, Breen M, Howard JT, Gresham CR, Peterson DG, Schmitz J, Pollock DD, Haussler D, Triplett EW, Zhang G, Irie N, Jarvis ED, Brochu CA, Schmidt CJ, McCarthy FM, Faircloth BC, Hoffmann FG, Glenn TC, Gabald?n T, Paten B, Ray DA. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science. 2014 Dec 12; 346(6215):1254449.Science2014-12-11T00:00:002014Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.SaraSawyerSara Lea Sawyer40.00825400000000-105.268079500000009570Sawyer, SaraProfessorAuthorship 850422Authorship 8532032Authorship 855703Authorship 907089Authorship 908192Authorship 916547Authorship 1218782825671092Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, Zhang Y, Lang Y, Xia J, He W, Shi Q, Subramanian S, Millar CD, Meader S, Rands CM, Fujita MK, Greenwold MJ, Castoe TA, Pollock DD, Gu W, Nam K, Ellegren H, Ho SY, Burt DW, Ponting CP, Jarvis ED, Gilbert MT, Yang H, Wang J, Lambert DM, Wang J, Zhang GGigaScienceLi C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, Zhang Y, Lang Y, Xia J, He W, Shi Q, Subramanian S, Millar CD, Meader S, Rands CM, Fujita MK, Greenwold MJ, Castoe TA, Pollock DD, Gu W, Nam K, Ellegren H, Ho SY, Burt DW, Ponting CP, Jarvis ED, Gilbert MT, Yang H, Wang J, Lambert DM, Wang J, Zhang G. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience. 2014; 3(1):27.Gigascience2014-12-12T00:00:002014Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment.Authorship 124280625670730Andrew AL, Card DC, Ruggiero RP, Schield DR, Adams RH, Pollock DD, Secor SM, Castoe TAPhysiological genomicsAndrew AL, Card DC, Ruggiero RP, Schield DR, Adams RH, Pollock DD, Secor SM, Castoe TA. Rapid changes in gene expression direct rapid shifts in intestinal form and function in the Burmese python after feeding. Physiol Genomics. 2015 May; 47(5):147-57.Physiol Genomics2015-02-10T00:00:002015Rapid changes in gene expression direct rapid shifts in intestinal form and function in the Burmese python after feeding.Authorship 125451425737491Goldstein RA, Pollard ST, Shah SD, Pollock DDMolecular biology and evolutionGoldstein RA, Pollard ST, Shah SD, Pollock DD. Nonadaptive Amino Acid Convergence Rates Decrease over Time. Mol Biol Evol. 2015 Jun; 32(6):1373-81.Mol Biol Evol2015-03-03T00:00:002015Nonadaptive Amino Acid Convergence Rates Decrease over Time.Authorship 953472Authorship 1285081326244060Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, Wheeler TJ, Bureau TE, Blanchette MMobile DNAHoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, Wheeler TJ, Bureau TE, Blanchette M. A call for benchmarking transposable element annotation methods. Mob DNA. 2015; 6:13.Mob DNA2015-08-04T00:00:002015A call for benchmarking transposable element annotation methods.Authorship 968373Authorship 134855926268928Speed JS, Heimlich JB, Hyndman KA, Fox BM, Patel V, Yanagisawa M, Pollock JS, Titze JM, Pollock DMFASEB journal : official publication of the Federation of American Societies for Experimental BiologySpeed JS, Heimlich JB, Hyndman KA, Fox BM, Patel V, Yanagisawa M, Pollock JS, Titze JM, Pollock DM. Endothelin-1 as a master regulator of whole-body Na+ homeostasis. FASEB J. 2015 Dec; 29(12):4937-44.FASEB J2015-08-12T00:00:002015Endothelin-1 as a master regulator of whole-body Na+ homeostasis.Authorship 139417726956245Davenport AP, Hyndman KA, Dhaun N, Southan C, Kohan DE, Pollock JS, Pollock DM, Webb DJ, Maguire JJPharmacological reviewsDavenport AP, Hyndman KA, Dhaun N, Southan C, Kohan DE, Pollock JS, Pollock DM, Webb DJ, Maguire JJ. Endothelin. Pharmacol Rev. 2016 Apr; 68(2):357-418.Pharmacol Rev2016-04-01T00:00:002016Endothelin.Authorship 144007227028523Goldstein RA, Pollock DDProtein science : a publication of the Protein SocietyGoldstein RA, Pollock DD. The tangled bank of amino acids. Protein Sci. 2016 07; 25(7):1354-62.Protein Sci2016-05-12T00:00:002016The tangled bank of amino acids.11110893Pollock DD, Eisen JA, Doggett NA, Cummings MPMolecular biology and evolutionPollock DD, Eisen JA, Doggett NA, Cummings MP. A case for evolutionary genomics and the comprehensive examination of sequence biodiversity. Mol Biol Evol. 2000 Dec; 17(12):1776-88.Mol Biol Evol2000-12-01T00:00:002000A case for evolutionary genomics and the comprehensive examination of sequence biodiversity.Authorship 151297225473139Williams PD, Pollock DD, Goldstein RAInternational journal of modern physics. C, Physics and computersWilliams PD, Pollock DD, Goldstein RA. SELECTIVE ADVANTAGE OF RECOMBINATION IN EVOLVING PROTEIN POPULATIONS: A LATTICE MODEL STUDY. Int J Mod Phys C. 2006 Jan; 17(1):75-90.Int J Mod Phys C2006-01-01T00:00:002006SELECTIVE ADVANTAGE OF RECOMBINATION IN EVOLVING PROTEIN POPULATIONS: A LATTICE MODEL STUDY.Authorship 156388828107347Shortt JA, Card DC, Schield DR, Liu Y, Zhong B, Castoe TA, Carlton EJ, Pollock DDPLoS neglected tropical diseasesShortt JA, Card DC, Schield DR, Liu Y, Zhong B, Castoe TA, Carlton EJ, Pollock DD. Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma japonicum Miracidia. PLoS Negl Trop Dis. 2017 01; 11(1):e0005292.PLoS Negl Trop Dis2017-01-20T00:00:002017Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma japonicum Miracidia.1Professor3Asst Professor2Assoc Professor4Instructor7Fellow or Post DocAuthorship 159040726799790Jiang Z, Gera L, Mant CT, Hirsch B, Yan Z, Shortt JA, Pollock DD, Qian Z, Holmes KV, Hodges RSBiopolymersJiang Z, Gera L, Mant CT, Hirsch B, Yan Z, Shortt JA, Pollock DD, Qian Z, Holmes KV, Hodges RS. Platform technology to generate broadly cross-reactive antibodies to a-helical epitopes in hemagglutinin proteins from influenza A viruses. Biopolymers. 2016 Mar; 106(2):144-159.Biopolymers2016-03-01T00:00:002016Platform technology to generate broadly cross-reactive antibodies to a-helical epitopes in hemagglutinin proteins from influenza A viruses.16292000Wheat CW, Watt WB, Pollock DD, Schulte PMMolecular biology and evolutionWheat CW, Watt WB, Pollock DD, Schulte PM. From DNA to fitness differences: sequences and structures of adaptive variants of Colias phosphoglucose isomerase (PGI). Mol Biol Evol. 2006 Mar; 23(3):499-512.Mol Biol Evol2005-11-16T00:00:002005From DNA to fitness differences: sequences and structures of adaptive variants of Colias phosphoglucose isomerase (PGI).2017-01-31NIHPOLLOCK, DAVID D2012-04-13Genome-wide mutation models to decipher functionR01GM0972512021-02-28NIHPOLLOCK, DAVID D2009-03-01Modeling evolution of functional context in proteinsR01GM0831272004-07-31NIHPOLLOCK, DAVID D2002-08-01Protein sequence, structure, and computational analysisR21GM0656122008-05-31NIHPOLLOCK, DAVID D2002-08-01Protein sequence, structure, and computational analysisR33GM065612Principal InvestigatorPrincipal InvestigatorPrincipal InvestigatorPrincipal Investigator16698770Goldstein RA, Pollock DDMolecular biology and evolutionGoldstein RA, Pollock DD. Observations of amino acid gain and loss during protein evolution are explained by statistical bias. Mol Biol Evol. 2006 Jul; 23(7):1444-9.Mol Biol Evol2006-05-11T00:00:002006Observations of amino acid gain and loss during protein evolution are explained by statistical bias.17175661Stocks JM, Brantly M, Pollock D, Barker A, Kueppers F, Strange C, Donohue JF, Sandhaus RCOPDStocks JM, Brantly M, Pollock D, Barker A, Kueppers F, Strange C, Donohue JF, Sandhaus R. Multi-center study: the biochemical efficacy, safety and tolerability of a new alpha1-proteinase inhibitor, Zemaira. COPD. 2006 Mar; 3(1):17-23.COPD2006-03-01T00:00:002006Multi-center study: the biochemical efficacy, safety and tolerability of a new alpha1-proteinase inhibitor, Zemaira.17118150Nahum LA, Reynolds MT, Wang ZO, Faith JJ, Jonna R, Jiang ZJ, Meyer TJ, Pollock DDBMC bioinformaticsNahum LA, Reynolds MT, Wang ZO, Faith JJ, Jonna R, Jiang ZJ, Meyer TJ, Pollock DD. EGenBio: a data management system for evolutionary genomics and biodiversity. BMC Bioinformatics. 2006 Sep 06; 7 Suppl 2:S7.BMC Bioinformatics2006-09-06T00:00:002006EGenBio: a data management system for evolutionary genomics and biodiversity.17480122Hentges KE, Pollock DD, Liu B, Justice MJPLoS geneticsHentges KE, Pollock DD, Liu B, Justice MJ. Regional variation in the density of essential genes in mice. PLoS Genet. 2007 May 04; 3(5):e72.PLoS Genet2007-03-21T00:00:002007Regional variation in the density of essential genes in mice.17655768Jiang ZJ, Castoe TA, Austin CC, Burbrink FT, Herron MD, McGuire JA, Parkinson CL, Pollock DDBMC evolutionary biologyJiang ZJ, Castoe TA, Austin CC, Burbrink FT, Herron MD, McGuire JA, Parkinson CL, Pollock DD. Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region. BMC Evol Biol. 2007 Jul 26; 7:123.BMC Evol Biol2007-07-26T00:00:002007Comparative mitochondrial genomics of snakes: extraordinary substitution rate dynamics and functionality of the duplicate control region.17495012Gentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka JGenome researchGentles AJ, Wakefield MJ, Kohany O, Gu W, Batzer MA, Pollock DD, Jurka J. Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica. Genome Res. 2007 Jul; 17(7):992-1004.Genome Res2007-05-10T00:00:002007Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica.17955155Wang ZO, Pollock DDJournal of molecular evolutionWang ZO, Pollock DD. Coevolutionary patterns in cytochrome c oxidase subunit I depend on structural and functional context. J Mol Evol. 2007 Nov; 65(5):485-95.J Mol Evol2007-11-01T00:00:002007Coevolutionary patterns in cytochrome c oxidase subunit I depend on structural and functional context.18541131Gu W, Castoe TA, Hedges DJ, Batzer MA, Pollock DDAnalytical biochemistryGu W, Castoe TA, Hedges DJ, Batzer MA, Pollock DD. Identification of repeat structure in large genomes using repeat probability clouds. Anal Biochem. 2008 Sep 01; 380(1):77-83.Anal Biochem2008-05-20T00:00:002008Identification of repeat structure in large genomes using repeat probability clouds.18342330Thai V, Renesto P, Fowler CA, Brown DJ, Davis T, Gu W, Pollock DD, Kern D, Raoult D, Eisenmesser EZJournal of molecular biologyThai V, Renesto P, Fowler CA, Brown DJ, Davis T, Gu W, Pollock DD, Kern D, Raoult D, Eisenmesser EZ. Structural, biochemical, and in vivo characterization of the first virally encoded cyclophilin from the Mimivirus. J Mol Biol. 2008 Apr 18; 378(1):71-86.J Mol Biol2007-08-29T00:00:002007Structural, biochemical, and in vivo characterization of the first virally encoded cyclophilin from the Mimivirus.19416880Castoe TA, de Koning AP, Kim HM, Gu W, Noonan BP, Naylor G, Jiang ZJ, Parkinson CL, Pollock DDProceedings of the National Academy of Sciences of the United States of AmericaCastoe TA, de Koning AP, Kim HM, Gu W, Noonan BP, Naylor G, Jiang ZJ, Parkinson CL, Pollock DD. Evidence for an ancient adaptive episode of convergent molecular evolution. Proc Natl Acad Sci U S A. 2009 Jun 02; 106(22):8986-91.Proc Natl Acad Sci U S A2009-04-28T00:00:002009Evidence for an ancient adaptive episode of convergent molecular evolution.20418443Harris JK, Sahl JW, Castoe TA, Wagner BD, Pollock DD, Spear JRApplied and environmental microbiologyHarris JK, Sahl JW, Castoe TA, Wagner BD, Pollock DD, Spear JR. Comparison of normalization methods for construction of large, multiplex amplicon pools for next-generation sequencing. Appl Environ Microbiol. 2010 Jun; 76(12):3863-8.Appl Environ Microbiol2010-04-23T00:00:002010Comparison of normalization methods for construction of large, multiplex amplicon pools for next-generation sequencing.JohnRinnJohn Rinn40.00830860000000-105.2490672000000013280Rinn, JohnProfessorOliviaRisslandOlivia S Rissland39.74528180000000-104.8375727000000013304Rissland, OliviaAssociate Professor21565030Castoe TA, Poole AW, Gu W, Jason de Koning AP, Daza JM, Smith EN, Pollock DDMolecular ecology resourcesCastoe TA, Poole AW, Gu W, Jason de Koning AP, Daza JM, Smith EN, Pollock DD. Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Mol Ecol Resour. 2010 Mar; 10(2):341-7.Mol Ecol Resour2009-07-30T00:00:002009Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence.Authorship 171492229062121Goldstein RA, Pollock DDNature ecology & evolutionGoldstein RA, Pollock DD. Sequence entropy of folding and the absolute rate of amino acid substitutions. Nat Ecol Evol. 2017 Dec; 1(12):1923-1930.Nat Ecol Evol2017-10-23T00:00:002017Sequence entropy of folding and the absolute rate of amino acid substitutions.12801 E 17th Ave2RC1SResearch South Tower12801 E 17th AveAurora80045-2570CO21867488Castoe TA, Fox SE, Jason de Koning A, Poole AW, Daza JM, Smith EN, Mockler TC, Secor SM, Pollock DDBMC research notesCastoe TA, Fox SE, Jason de Koning A, Poole AW, Daza JM, Smith EN, Mockler TC, Secor SM, Pollock DD. A multi-organ transcriptome resource for the Burmese Python (Python molurus bivittatus). BMC Res Notes. 2011 Aug 25; 4:310.BMC Res Notes2011-08-25T00:00:002011A multi-organ transcriptome resource for the Burmese Python (Python molurus bivittatus).22293439St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ, Glenn TC, Green RE, Ray DAGenome biologySt John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ, Glenn TC, Green RE, Ray DA. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biol. 2012 Jan 31; 13(1):415.Genome Biol2012-01-31T00:00:002012Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.22315318Nakayama M, Castoe T, Sosinowski T, He X, Johnson K, Haskins K, Vignali DA, Gapin L, Pollock D, Eisenbarth GSDiabetesNakayama M, Castoe T, Sosinowski T, He X, Johnson K, Haskins K, Vignali DA, Gapin L, Pollock D, Eisenbarth GS. Germline TRAV5D-4 T-cell receptor sequence targets a primary insulin peptide of NOD mice. Diabetes. 2012 Apr; 61(4):857-65.Diabetes2012-02-07T00:00:002012Germline TRAV5D-4 T-cell receptor sequence targets a primary insulin peptide of NOD mice.22528593Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, Lakner C, Lartillot N, Lovell SC, Naylor G, Perica T, Pollock DD, Pupko T, Regan L, Roger A, Rubinstein N, Shakhnovich E, Sj?lander K, Sunyaev S, Teufel AI, Thorne JL, Thornton JW, Weinreich DM, Whelan SProtein science : a publication of the Protein SocietyLiberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, Lakner C, Lartillot N, Lovell SC, Naylor G, Perica T, Pollock DD, Pupko T, Regan L, Roger A, Rubinstein N, Shakhnovich E, Sj?lander K, Sunyaev S, Teufel AI, Thorne JL, Thornton JW, Weinreich DM, Whelan S. The interface of protein structure, protein biophysics, and molecular evolution. Protein Sci. 2012 Jun; 21(6):769-85.Protein Sci2012-04-23T00:00:002012The interface of protein structure, protein biophysics, and molecular evolution.22724064Wang B, Ekblom R, Castoe TA, Jones EP, Kozma R, Bongcam-Rudloff E, Pollock DD, H?glund JOpen biologyWang B, Ekblom R, Castoe TA, Jones EP, Kozma R, Bongcam-Rudloff E, Pollock DD, H?glund J. Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development. Open Biol. 2012 Apr; 2(4):120054.Open Biol2012-04-01T00:00:002012Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development.14573484Faith JJ, Pollock DDGeneticsFaith JJ, Pollock DD. Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes. Genetics. 2003 Oct; 165(2):735-45.Genetics2003-10-01T00:00:002003Likelihood analysis of asymmetrical mutation bias gradients in vertebrate mitochondrial genomes.15130847Pollock DDApplied bioinformaticsPollock DD. Genomic biodiversity, phylogenetics and coevolution in proteins. Appl Bioinformatics. 2002; 1(2):81-92.Appl Bioinformatics2002-01-01T00:00:002002Genomic biodiversity, phylogenetics and coevolution in proteins.15229290Krishnan NM, Seligmann H, Stewart CB, De Koning AP, Pollock DDMolecular biology and evolutionKrishnan NM, Seligmann H, Stewart CB, De Koning AP, Pollock DD. Ancestral sequence reconstruction in primate mitochondrial DNA: compositional bias and effect on functional inference. Mol Biol Evol. 2004 Oct; 21(10):1871-83.Mol Biol Evol2004-06-30T00:00:002004Ancestral sequence reconstruction in primate mitochondrial DNA: compositional bias and effect on functional inference.15585129Krishnan NM, Seligmann H, Raina SZ, Pollock DDDNA and cell biologyKrishnan NM, Seligmann H, Raina SZ, Pollock DD. Detecting gradients of asymmetry in site-specific substitutions in mitochondrial genomes. DNA Cell Biol. 2004 Oct; 23(10):707-14.DNA Cell Biol2004-10-01T00:00:002004Detecting gradients of asymmetry in site-specific substitutions in mitochondrial genomes.15865995Wang ZO, Pollock DDMethods in enzymologyWang ZO, Pollock DD. Context dependence and coevolution among amino acid residues in proteins. Methods Enzymol. 2005; 395:779-90.Methods Enzymol2005-01-01T00:00:002005Context dependence and coevolution among amino acid residues in proteins.15867428Raina SZ, Faith JJ, Disotell TR, Seligmann H, Stewart CB, Pollock DDGenome researchRaina SZ, Faith JJ, Disotell TR, Seligmann H, Stewart CB, Pollock DD. Evolution of base-substitution gradients in primate mitochondrial genomes. Genome Res. 2005 May; 15(5):665-73.Genome Res2005-05-01T00:00:002005Evolution of base-substitution gradients in primate mitochondrial genomes.11110901Pollock DD, Bruno WJMolecular biology and evolutionPollock DD, Bruno WJ. Assessing an unknown evolutionary process: effect of increasing site-specific knowledge through taxon addition. Mol Biol Evol. 2000 Dec; 17(12):1854-8.Mol Biol Evol2000-12-01T00:00:002000Assessing an unknown evolutionary process: effect of increasing site-specific knowledge through taxon addition.14993198Sasser JM, Sullivan JC, Elmarakby AA, Kemp BE, Pollock DM, Pollock JSHypertension (Dallas, Tex. : 1979)Sasser JM, Sullivan JC, Elmarakby AA, Kemp BE, Pollock DM, Pollock JS. Reduced NOS3 phosphorylation mediates reduced NO/cGMP signaling in mesenteric arteries of deoxycorticosterone acetate-salt hypertensive rats. Hypertension. 2004 May; 43(5):1080-5.Hypertension2004-03-01T00:00:002004Reduced NOS3 phosphorylation mediates reduced NO/cGMP signaling in mesenteric arteries of deoxycorticosterone acetate-salt hypertensive rats.17495919Mikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, Hore TA, Huttley GA, Kleber M, Jirtle RL, Koina E, Lee JT, Mahony S, Marra MA, Miller RD, Nicholls RD, Oda M, Papenfuss AT, Parra ZE, Pollock DD, Ray DA, Schein JE, Speed TP, Thompson K, VandeBerg JL, Wade CM, Walker JA, Waters PD, Webber C, Weidman JR, Xie X, Zody MC, Graves JA, Ponting CP, Breen M, Samollow PB, Lander ES, Lindblad-Toh KNatureMikkelsen TS, Wakefield MJ, Aken B, Amemiya CT, Chang JL, Duke S, Garber M, Gentles AJ, Goodstadt L, Heger A, Jurka J, Kamal M, Mauceli E, Searle SM, Sharpe T, Baker ML, Batzer MA, Benos PV, Belov K, Clamp M, Cook A, Cuff J, Das R, Davidow L, Deakin JE, Fazzari MJ, Glass JL, Grabherr M, Greally JM, Gu W, Hore TA, Huttley GA, Kleber M, Jirtle RL, Koina E, Lee JT, Mahony S, Marra MA, Miller RD, Nicholls RD, Oda M, Papenfuss AT, Parra ZE, Pollock DD, Ray DA, Schein JE, Speed TP, Thompson K, VandeBerg JL, Wade CM, Walker JA, Waters PD, Webber C, Weidman JR, Xie X, Zody MC, Graves JA, Ponting CP, Breen M, Samollow PB, Lander ES, Lindblad-Toh K. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature. 2007 May 10; 447(7141):167-77.Nature2007-05-10T00:00:002007Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.16197733Xu YO, Hall RW, Goldstein RA, Pollock DDHuman genomicsXu YO, Hall RW, Goldstein RA, Pollock DD. Divergence, recombination and retention of functionality during protein evolution. Hum Genomics. 2005 Sep; 2(3):158-67.Hum Genomics2005-09-01T00:00:002005Divergence, recombination and retention of functionality during protein evolution.16789817Williams PD, Pollock DD, Blackburne BP, Goldstein RAPLoS computational biologyWilliams PD, Pollock DD, Blackburne BP, Goldstein RA. Assessing the accuracy of ancestral protein reconstruction methods. PLoS Comput Biol. 2006 Jun 23; 2(6):e69.PLoS Comput Biol2006-06-23T00:00:002006Assessing the accuracy of ancestral protein reconstruction methods.17442506Gu W, Ray DA, Walker JA, Barnes EW, Gentles AJ, Samollow PB, Jurka J, Batzer MA, Pollock DDGeneGu W, Ray DA, Walker JA, Barnes EW, Gentles AJ, Samollow PB, Jurka J, Batzer MA, Pollock DD. SINEs, evolution and genome structure in the opossum. Gene. 2007 Jul 01; 396(1):46-58.Gene2007-03-19T00:00:002007SINEs, evolution and genome structure in the opossum.19783593de Koning AP, Gu W, Pollock DDMolecular biology and evolutionde Koning AP, Gu W, Pollock DD. Rapid likelihood analysis on large phylogenies using partial sampling of substitution histories. 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The genome of a songbird. Nature. 2010 Apr 01; 464(7289):757-62.Nature2010-04-01T00:00:002010The genome of a songbird.18493604Castoe TA, Jiang ZJ, Gu W, Wang ZO, Pollock DDPloS oneCastoe TA, Jiang ZJ, Gu W, Wang ZO, Pollock DD. Adaptive evolution and functional redesign of core metabolic proteins in snakes. PLoS One. 2008 May 21; 3(5):e2201.PLoS One2008-05-21T00:00:002008Adaptive evolution and functional redesign of core metabolic proteins in snakes.20539788Castoe TA, de Koning AP, Pollock DDCommunicative & integrative biologyCastoe TA, de Koning AP, Pollock DD. Adaptive molecular convergence: Molecular evolution versus molecular phylogenetics. 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The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature. 2011 Aug 31; 477(7366):587-91.Nature2011-08-31T00:00:002011The genome of the green anole lizard and a comparative analysis with birds and mammals.22069446Pollock DD, de Koning AP, Kim H, Castoe TA, Churchill ME, Kechris KJPloS onePollock DD, de Koning AP, Kim H, Castoe TA, Churchill ME, Kechris KJ. Bayesian analysis of high-throughput quantitative measurement of protein-DNA interactions. PLoS One. 2011; 6(11):e26105.PLoS One2011-11-01T00:00:002011Bayesian analysis of high-throughput quantitative measurement of protein-DNA interactions.22144907de Koning AP, Gu W, Castoe TA, Batzer MA, Pollock DDPLoS geneticsde Koning AP, Gu W, Castoe TA, Batzer MA, Pollock DD. Repetitive elements may comprise over two-thirds of the human genome. 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Report from the first snake genomics and integrative biology meeting. Stand Genomic Sci. 2012 Oct 10; 7(1):150-2.Stand Genomic Sci2012-09-24T00:00:002012Report from the first snake genomics and integrative biology meeting.21677863Castoe TA, Bronikowski AM, Brodie ED, Edwards SV, Pfrender ME, Shapiro MD, Pollock DD, Warren WCStandards in genomic sciencesCastoe TA, Bronikowski AM, Brodie ED, Edwards SV, Pfrender ME, Shapiro MD, Pollock DD, Warren WC. A proposal to sequence the genome of a garter snake (Thamnophis sirtalis). Stand Genomic Sci. 2011 Apr 29; 4(2):257-70.Stand Genomic Sci2011-04-29T00:00:002011A proposal to sequence the genome of a garter snake (Thamnophis sirtalis).21801464Castoe TA, de Koning JA, Hall KT, Yokoyama KD, Gu W, Smith EN, Feschotte C, Uetz P, Ray DA, Dobry J, Bogden R, Mackessy SP, Bronikowski AM, Warren WC, Secor SM, Pollock DDGenome biologyCastoe TA, de Koning JA, Hall KT, Yokoyama KD, Gu W, Smith EN, Feschotte C, Uetz P, Ray DA, Dobry J, Bogden R, Mackessy SP, Bronikowski AM, Warren WC, Secor SM, Pollock DD. Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes. 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SP transcription factor paralogs and DNA-binding sites coevolve and adaptively converge in mammals and birds. Genome Biol Evol. 2012; 4(11):1102-17.Genome Biol Evol2012-01-01T00:00:002012SP transcription factor paralogs and DNA-binding sites coevolve and adaptively converge in mammals and birds.3410321Pollock D, Bauer CE, Scolnik PAGenePollock D, Bauer CE, Scolnik PA. Transcription of the Rhodobacter capsulatus nifHDK operon is modulated by the nitrogen source. Construction of plasmid expression vectors based on the nifHDK promoter. Gene. 1988 May 30; 65(2):269-75.Gene1988-05-30T00:00:001988Transcription of the Rhodobacter capsulatus nifHDK operon is modulated by the nitrogen source. Construction of plasmid expression vectors based on the nifHDK promoter.JonathanShorttJonathan Andrew Shortt39.74403280000000-104.8408104000000014208Shortt, JonathanAsst Professor-ResearchAuthorship 182986929932944Paukovich N, Xue M, Elder JR, Redzic JS, Blue A, Pike H, Miller BG, Pitts TM, Pollock DD, Hansen K, D'Alessandro A, Eisenmesser EZJournal of molecular biologyPaukovich N, Xue M, Elder JR, Redzic JS, Blue A, Pike H, Miller BG, Pitts TM, Pollock DD, Hansen K, D'Alessandro A, Eisenmesser EZ. Biliverdin Reductase B Dynamics Are Coupled to Coenzyme Binding. J Mol Biol. 2018 09 14; 430(18 Pt B):3234-3250.J Mol Biol2018-06-20T00:00:002018Biliverdin Reductase B Dynamics Are Coupled to Coenzyme Binding.D010802Concepts & Ideas2798300.740196PhylogenyD019943PhysiologyProcedures1782780.910336Amino Acid SubstitutionAuthorship 1939044Authorship 194248130657947Pollock DDMolecular biology and evolutionPollock DD. Society for Molecular Biology and Evolution, Council and Business Meetings, 2018, Yokohama, Japan. Mol Biol Evol. 2019 01 01; 36(1):204-206.Mol Biol Evol2019-01-01T00:00:002019Society for Molecular Biology and Evolution, Council and Business Meetings, 2018, Yokohama, Japan.30704976Becker BK, Zhang D, Soliman R, Pollock DMAutonomic neuroscience : basic & clinicalBecker BK, Zhang D, Soliman R, Pollock DM. Autonomic nerves and circadian control of renal function. Auton Neurosci. 2019 03; 217:58-65.Auton Neurosci2019-01-10T00:00:002019Autonomic nerves and circadian control of renal function.RyanSheridanRyan Michael Sheridan39.74389450000000-104.8394352000000015235Sheridan, RyanResearch Senior InstructorXueniLiXueni Li39.74389450000000-104.8394352000000015327Li, XueniResearch Senior InstructorMarcoDe DominiciMarco De Dominici39.74389450000000-104.8394352000000015439De Dominici, MarcoPost-Doctoral FellowD016678Genes & Molecular Sequences1432910.812975GenomeREN GENERAL OPERATIONSAuthorship 105877D019143Phenomena2024590.72816Evolution, MolecularD011506Chemicals & Drugs4029530.627884ProteinsBiology-MCD InstructionCSPH-Bio Info General OpsCSPH-EOH General OpBiochemistryEcology & Evolutionary BiologySOM-BioChem&Molecular GeneticsSOM-MEDUniversity of Colorado BoulderUniversity of Colorado Denver - Anschutz Medical CampusDavidBentleyDavid L Bentley39.74389450000000-104.83943520000000130Bentley, DavidProfessorAuthorship 11021RuiZhaoRui Zhao39.74389450000000-104.839435200000001512Zhao, RuiProfessorKaterinaKechrisKaterina Kechris39.74528180000000-104.837572700000002310Kechris, KaterinaProfessor7.475850.00822032375research areas2.207360.021738323coauthor of58.833311.692960similar to1197selected publicationsElanEisenmesserElan Zohar Eisenmesser39.74389450000000-104.839435200000002563Eisenmesser, ElanAssociate ProfessorRichardJohnsonRichard J Johnson39.74515960000000-104.840628000000003114Johnson, RichardProfessorShelleyCopleyShelley Copley40.00825400000000-105.26807950000000980Copley, ShelleyProfessorNolanKaneNolan Coburn Kane40.00823370000000-105.269307100000005411Kane, NolanAssociate ProfessorElizabethCarltonElizabeth Jean Carlton39.74528180000000-104.837572700000007153Carlton, ElizabethAssociate ProfessorAuthorship 1460919Authorship 215329131986214Pollock DDMolecular biology and evolutionPollock DD. Society for Molecular Biology and Evolution, Council and Business Meetings, 2019, Manchester, United Kingdom. Mol Biol Evol. 2020 Jan 01; 37(1):301-303.Mol Biol Evol2020-01-01T00:00:002020Society for Molecular Biology and Evolution, Council and Business Meetings, 2019, Manchester, United Kingdom.Authorship 216689532095164Shortt JA, Ruggiero RP, Cox C, Wacholder AC, Pollock DDMobile DNAShortt JA, Ruggiero RP, Cox C, Wacholder AC, Pollock DD. Finding and extending ancient simple sequence repeat-derived regions in the human genome. Mob DNA. 2020; 11:11.Mob DNA2020-02-17T00:00:002020Finding and extending ancient simple sequence repeat-derived regions in the human genome.Authorship 153916Authorship 2222281132573897Sparkenbaugh EM, Kasztan M, Henderson MW, Ellsworth P, Davis PR, Wilson KJ, Reeves B, Key NS, Strickland S, McCrae K, Pollock DM, Pawlinski RJournal of thrombosis and haemostasis : JTHSparkenbaugh EM, Kasztan M, Henderson MW, Ellsworth P, Davis PR, Wilson KJ, Reeves B, Key NS, Strickland S, McCrae K, Pollock DM, Pawlinski R. High molecular weight kininogen contributes to early mortality and kidney dysfunction in a mouse model of sickle cell disease. J Thromb Haemost. 2020 09; 18(9):2329-2340.J Thromb Haemost2020-08-27T00:00:002020High molecular weight kininogen contributes to early mortality and kidney dysfunction in a mouse model of sickle cell disease.Authorship 2240231Authorship 2240971131904281Zhang D, Jin C, Obi IE, Rhoads MK, Soliman RH, Sedaka RS, Allan JM, Tao B, Speed JS, Pollock JS, Pollock DMAmerican journal of physiology. Renal physiologyZhang D, Jin C, Obi IE, Rhoads MK, Soliman RH, Sedaka RS, Allan JM, Tao B, Speed JS, Pollock JS, Pollock DM. Loss of circadian gene Bmal1 in the collecting duct lowers blood pressure in male, but not female, mice. Am J Physiol Renal Physiol. 2020 03 01; 318(3):F710-F719.Am J Physiol Renal Physiol2020-01-06T00:00:002020Loss of circadian gene Bmal1 in the collecting duct lowers blood pressure in male, but not female, mice.32658964Pollock DD, Castoe TA, Perry BW, Lytras S, Wade KJ, Robertson DL, Holmes EC, Boni MF, Kosakovsky Pond SL, Parry R, Carlton EJ, Wood JLN, Pennings PS, Goldstein RAMolecular biology and evolutionPollock DD, Castoe TA, Perry BW, Lytras S, Wade KJ, Robertson DL, Holmes EC, Boni MF, Kosakovsky Pond SL, Parry R, Carlton EJ, Wood JLN, Pennings PS, Goldstein RA. Viral CpG Deficiency Provides No Evidence That Dogs Were Intermediate Hosts for SARS-CoV-2. Mol Biol Evol. 2020 09 01; 37(9):2706-2710.Mol Biol Evol2020-09-01T00:00:002020Viral CpG Deficiency Provides No Evidence That Dogs Were Intermediate Hosts for SARS-CoV-2.Authorship 22750630Authorship 227638228812732Fukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, Mori H, Nishiyama T, Nozawa M, P?lfalvi G, Pollard ST, Rozas J, S?nchez-Gracia A, Sankoff D, Shibata TF, Shigenobu S, Sumikawa N, Uzawa T, Xie M, Zheng C, Pollock DD, Albert VA, Li S, Hasebe MNature ecology & evolutionFukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, Mori H, Nishiyama T, Nozawa M, P?lfalvi G, Pollard ST, Rozas J, S?nchez-Gracia A, Sankoff D, Shibata TF, Shigenobu S, Sumikawa N, Uzawa T, Xie M, Zheng C, Pollock DD, Albert VA, Li S, Hasebe M. Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory. Nat Ecol Evol. 2017 Feb 06; 1(3):59.Nat Ecol Evol2017-02-06T00:00:002017Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory.32900997Fukushima K, Pollock DDNature communicationsFukushima K, Pollock DD. Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution. Nat Commun. 2020 09 08; 11(1):4459.Nat Commun2020-09-08T00:00:002020Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution.Authorship 1619933Authorship 23396226Authorship 23395110Authorship 2352822833398302Kemp SA, Collier DA, Datir R, Ferreira I, Gayed S, Jahun A, Hosmillo M, Rees-Spear C, Mlcochova P, Lumb IU, Roberts DJ, Chandra A, Temperton N, Sharrocks K, Blane E, Briggs J, van GM, Smith K, Bradley JR, Smith C, Doffinger R, Ceron-Gutierrez L, Barcenas-Morales G, Pollock DD, Goldstein RA, Smielewska A, Skittrall JP, Gouliouris T, Goodfellow IG, Gkrania-Klotsas E, Illingworth C, McCoy LE, Gupta RKmedRxiv : the preprint server for health sciencesKemp SA, Collier DA, Datir R, Ferreira I, Gayed S, Jahun A, Hosmillo M, Rees-Spear C, Mlcochova P, Lumb IU, Roberts DJ, Chandra A, Temperton N, Sharrocks K, Blane E, Briggs J, van GM, Smith K, Bradley JR, Smith C, Doffinger R, Ceron-Gutierrez L, Barcenas-Morales G, Pollock DD, Goldstein RA, Smielewska A, Skittrall JP, Gouliouris T, Goodfellow IG, Gkrania-Klotsas E, Illingworth C, McCoy LE, Gupta RK. Neutralising antibodies in Spike mediated SARS-CoV-2 adaptation. medRxiv. 2020 Dec 29.medRxiv2020-12-29T00:00:002020Neutralising antibodies in Spike mediated SARS-CoV-2 adaptation.33406094Nikolakis ZL, Hales NR, Perry BW, Schield DR, Timm LE, Liu Y, Zhong B, Kechris KJ, Carlton EJ, Pollock DD, Castoe TAPLoS neglected tropical diseasesNikolakis ZL, Hales NR, Perry BW, Schield DR, Timm LE, Liu Y, Zhong B, Kechris KJ, Carlton EJ, Pollock DD, Castoe TA. Patterns of relatedness and genetic diversity inferred from whole genome sequencing of archival blood fluke miracidia (Schistosoma japonicum). PLoS Negl Trop Dis. 2021 01; 15(1):e0009020.PLoS Negl Trop Dis2021-01-06T00:00:002021Patterns of relatedness and genetic diversity inferred from whole genome sequencing of archival blood fluke miracidia (Schistosoma japonicum).33545711Kemp SA, Collier DA, Datir RP, Ferreira IATM, Gayed S, Jahun A, Hosmillo M, Rees-Spear C, Mlcochova P, Lumb IU, Roberts DJ, Chandra A, Temperton N, Sharrocks K, Blane E, Modis Y, Leigh KE, Briggs JAG, van Gils MJ, Smith KGC, Bradley JR, Smith C, Doffinger R, Ceron-Gutierrez L, Barcenas-Morales G, Pollock DD, Goldstein RA, Smielewska A, Skittrall JP, Gouliouris T, Goodfellow IG, Gkrania-Klotsas E, Illingworth CJR, McCoy LE, Gupta RKNatureKemp SA, Collier DA, Datir RP, Ferreira IATM, Gayed S, Jahun A, Hosmillo M, Rees-Spear C, Mlcochova P, Lumb IU, Roberts DJ, Chandra A, Temperton N, Sharrocks K, Blane E, Modis Y, Leigh KE, Briggs JAG, van Gils MJ, Smith KGC, Bradley JR, Smith C, Doffinger R, Ceron-Gutierrez L, Barcenas-Morales G, Pollock DD, Goldstein RA, Smielewska A, Skittrall JP, Gouliouris T, Goodfellow IG, Gkrania-Klotsas E, Illingworth CJR, McCoy LE, Gupta RK. SARS-CoV-2 evolution during treatment of chronic infection. Nature. 2021 04; 592(7853):277-282.Nature2021-02-05T00:00:002021SARS-CoV-2 evolution during treatment of chronic infection.Authorship 23790211Authorship 238440633767307Shortt JA, Timm LE, Hales NR, Nikolakis ZL, Schield DR, Perry BW, Liu Y, Zhong B, Castoe TA, Carlton EJ, Pollock DDScientific reportsShortt JA, Timm LE, Hales NR, Nikolakis ZL, Schield DR, Perry BW, Liu Y, Zhong B, Castoe TA, Carlton EJ, Pollock DD. Population genomic analyses of schistosome parasites highlight critical challenges facing endgame elimination efforts. Sci Rep. 2021 03 25; 11(1):6884.Sci Rep2021-03-25T00:00:002021Population genomic analyses of schistosome parasites highlight critical challenges facing endgame elimination efforts.33798837Becker BK, Johnston JG, Young CM, Torres Rodriguez AA, Jin C, Pollock DMAutonomic neuroscience : basic & clinicalBecker BK, Johnston JG, Young CM, Torres Rodriguez AA, Jin C, Pollock DM. Endothelin B receptors impair baroreflex function and increase blood pressure variability during high salt diet. Auton Neurosci. 2021 05; 232:102796.Auton Neurosci2021-03-11T00:00:002021Endothelin B receptors impair baroreflex function and increase blood pressure variability during high salt diet.Authorship 239245233879570Eccleston RC, Pollock DD, Goldstein RAProceedings of the National Academy of Sciences of the United States of AmericaEccleston RC, Pollock DD, Goldstein RA. Selection for cooperativity causes epistasis predominately between native contacts and enables epistasis-based structure reconstruction. Proc Natl Acad Sci U S A. 2021 04 20; 118(16).Proc Natl Acad Sci U S A2021-04-20T00:00:002021Selection for cooperativity causes epistasis predominately between native contacts and enables epistasis-based structure reconstruction.Authorship 248108234475380Fukushima K, Pollock DDNature communicationsFukushima K, Pollock DD. Author Correction: Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution. Nat Commun. 2021 Sep 02; 12(1):5313.Nat Commun2021-09-02T00:00:002021Author Correction: Amalgamated cross-species transcriptomes reveal organ-specific propensity in gene expression evolution.Authorship 261135335504822Nikolakis ZL, Carlton EJ, Pollock DD, Castoe TATrends in parasitologyNikolakis ZL, Carlton EJ, Pollock DD, Castoe TA. A genomic can of worms for schistosome host-specificity. Trends Parasitol. 2022 07; 38(7):496-497.Trends Parasitol2022-05-01T00:00:002022A genomic can of worms for schistosome host-specificity.Authorship 2649002835864233Kemp SA, Collier DA, Datir RP, Ferreira IATM, Gayed S, Jahun A, Hosmillo M, Rees-Spear C, Mlcochova P, Lumb IU, Roberts DJ, Chandra A, Temperton N, Sharrocks K, Blane E, Modis Y, Leigh KE, Briggs JAG, van Gils MJ, Smith KGC, Bradley JR, Smith C, Doffinger R, Ceron-Gutierrez L, Barcenas-Morales G, Pollock DD, Goldstein RA, Smielewska A, Skittrall JP, Gouliouris T, Goodfellow IG, Gkrania-Klotsas E, Illingworth CJR, McCoy LE, Gupta RKNatureKemp SA, Collier DA, Datir RP, Ferreira IATM, Gayed S, Jahun A, Hosmillo M, Rees-Spear C, Mlcochova P, Lumb IU, Roberts DJ, Chandra A, Temperton N, Sharrocks K, Blane E, Modis Y, Leigh KE, Briggs JAG, van Gils MJ, Smith KGC, Bradley JR, Smith C, Doffinger R, Ceron-Gutierrez L, Barcenas-Morales G, Pollock DD, Goldstein RA, Smielewska A, Skittrall JP, Gouliouris T, Goodfellow IG, Gkrania-Klotsas E, Illingworth CJR, McCoy LE, Gupta RK. Author Correction: SARS-CoV-2 evolution during treatment of chronic infection. Nature. 2022 Aug; 608(7922):E23.Nature2022-08-01T00:00:002022Author Correction: SARS-CoV-2 evolution during treatment of chronic infection.Authorship 226707Authorship 233653SOM-BIOMED Informatics Gen OpsAuthorship 245247Authorship 27029413Authorship 27366610Authorship 2717642Authorship 2762081936040013Lund AJ, Wade KJ, Nikolakis ZL, Ivey KN, Perry BW, Pike HNC, Paull SH, Liu Y, Castoe TA, Pollock DD, Carlton EJeLifeLund AJ, Wade KJ, Nikolakis ZL, Ivey KN, Perry BW, Pike HNC, Paull SH, Liu Y, Castoe TA, Pollock DD, Carlton EJ. Integrating genomic and epidemiologic data to accelerate progress toward schistosomiasis elimination. Elife. 2022 08 30; 11.Elife2022-08-30T00:00:002022Integrating genomic and epidemiologic data to accelerate progress toward schistosomiasis elimination.36448463Gumz ML, Shimbo D, Abdalla M, Balijepalli RC, Benedict C, Chen Y, Earnest DJ, Gamble KL, Garrison SR, Gong MC, Hogenesch JB, Hong Y, Ivy JR, Joe B, Laposky AD, Liang M, MacLaughlin EJ, Martino TA, Pollock DM, Redline S, Rogers A, Dan Rudic R, Schernhammer ES, Stergiou GS, St-Onge MP, Wang X, Wright J, Oh YSHypertension (Dallas, Tex. : 1979)Gumz ML, Shimbo D, Abdalla M, Balijepalli RC, Benedict C, Chen Y, Earnest DJ, Gamble KL, Garrison SR, Gong MC, Hogenesch JB, Hong Y, Ivy JR, Joe B, Laposky AD, Liang M, MacLaughlin EJ, Martino TA, Pollock DM, Redline S, Rogers A, Dan Rudic R, Schernhammer ES, Stergiou GS, St-Onge MP, Wang X, Wright J, Oh YS. Toward Precision Medicine: Circadian Rhythm of Blood Pressure and Chronotherapy for Hypertension - 2021 NHLBI Workshop Report. Hypertension. 2023 03; 80(3):503-522.Hypertension2022-11-30T00:00:002022Toward Precision Medicine: Circadian Rhythm of Blood Pressure and Chronotherapy for Hypertension - 2021 NHLBI Workshop Report.36194597Wade KJ, Tisa S, Barrington C, Henriksen JC, Crooks KR, Gignoux CR, Almand AT, Steel JJ, Sitko JC, Rohrer JW, Wickert DP, Almand EA, Pollock DD, Rissland OSPloS oneWade KJ, Tisa S, Barrington C, Henriksen JC, Crooks KR, Gignoux CR, Almand AT, Steel JJ, Sitko JC, Rohrer JW, Wickert DP, Almand EA, Pollock DD, Rissland OS. Phylodynamics of a regional SARS-CoV-2 rapid spreading event in Colorado in late 2020. PLoS One. 2022; 17(10):e0274050.PLoS One2022-10-04T00:00:002022Phylodynamics of a regional SARS-CoV-2 rapid spreading event in Colorado in late 2020.36604553Fukushima K, Pollock DDNature ecology & evolutionFukushima K, Pollock DD. Detecting macroevolutionary genotype-phenotype associations using error-corrected rates of protein convergence. Nat Ecol Evol. 2023 01; 7(1):155-170.Nat Ecol Evol2023-01-05T00:00:002023Detecting macroevolutionary genotype-phenotype associations using error-corrected rates of protein convergence.Authorship 27923Authorship 281602Authorship 285581Authorship 306769Authorship 309214Authorship 324851Authorship 335214true1ProfessorProfessortrue1Research Senior InstructorResearch Senior Instructortrue1Asst Professor-ResearchAsst Professor-Researchtrue1ProfessorProfessortrue1ProfessorProfessortrue1Associate ProfessorAssociate Professortrue1ProfessorProfessortrue1Research Senior InstructorResearch Senior Instructortrue1ProfessorProfessortrue1Associate ProfessorAssociate Professortrue1ProfessorProfessortrue1Associate ProfessorAssociate Professortrue1Associate ProfessorAssociate Professortrue1Post-Doctoral FellowPost-Doctoral Fellowtrue1ProfessorProfessortrue1ProfessorProfessorAuthorship 345809Authorship 3558757Authorship 356749Authorship 3642710Authorship 1033522Authorship 1040427Authorship 1042022Authorship 10507217Authorship 1055124024060849Castoe TA, Pollock DDCell researchCastoe TA, Pollock DD. Chinese alligator genome illustrates molecular adaptations. Cell Res. 2013 Nov; 23(11):1254-5.Cell Res2013-09-24T00:00:002013Chinese alligator genome illustrates molecular adaptations.24297900Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, W?ster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pla D, Sanz L, Hyder AS, Ribeiro JM, Arntzen JW, van den Thillart GE, Boetzer M, Pirovano W, Dirks RP, Spaink HP, Duboule D, McGlinn E, Kini RM, Richardson MKProceedings of the National Academy of Sciences of the United States of AmericaVonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, W?ster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pla D, Sanz L, Hyder AS, Ribeiro JM, Arntzen JW, van den Thillart GE, Boetzer M, Pirovano W, Dirks RP, Spaink HP, Duboule D, McGlinn E, Kini RM, Richardson MK. The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system. Proc Natl Acad Sci U S A. 2013 Dec 17; 110(51):20651-6.Proc Natl Acad Sci U S A2013-12-02T00:00:002013The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.24297902Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, Polanco D, Dobry J, Vandewege MW, Li Q, Schott RK, Kapusta A, Minx P, Feschotte C, Uetz P, Ray DA, Hoffmann FG, Bogden R, Smith EN, Chang BS, Vonk FJ, Casewell NR, Henkel CV, Richardson MK, Mackessy SP, Bronikowski AM, Bronikowsi AM, Yandell M, Warren WC, Secor SM, Pollock DDProceedings of the National Academy of Sciences of the United States of AmericaCastoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, Polanco D, Dobry J, Vandewege MW, Li Q, Schott RK, Kapusta A, Minx P, Feschotte C, Uetz P, Ray DA, Hoffmann FG, Bogden R, Smith EN, Chang BS, Vonk FJ, Casewell NR, Henkel CV, Richardson MK, Mackessy SP, Bronikowski AM, Bronikowsi AM, Yandell M, Warren WC, Secor SM, Pollock DD. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proc Natl Acad Sci U S A. 2013 Dec 17; 110(51):20645-50.Proc Natl Acad Sci U S A2013-12-02T00:00:002013The Burmese python genome reveals the molecular basis for extreme adaptation in snakes.7670598Quattro JM, Pollock DD, Powell M, Woods HA, Powers DAMolecular marine biology and biotechnologyQuattro JM, Pollock DD, Powell M, Woods HA, Powers DA. Evolutionary relations among vertebrate muscle-type lactate dehydrogenases. Mol Mar Biol Biotechnol. 1995 Sep; 4(3):224-31.Mol Mar Biol Biotechnol1995-09-01T00:00:001995Evolutionary relations among vertebrate muscle-type lactate dehydrogenases.23608660Hyndman KA, Boesen EI, Elmarakby AA, Brands MW, Huang P, Kohan DE, Pollock DM, Pollock JSHypertension (Dallas, Tex. : 1979)Hyndman KA, Boesen EI, Elmarakby AA, Brands MW, Huang P, Kohan DE, Pollock DM, Pollock JS. Renal collecting duct NOS1 maintains fluid-electrolyte homeostasis and blood pressure. Hypertension. 2013 07; 62(1):91-8.Hypertension2013-04-22T00:00:002013Renal collecting duct NOS1 maintains fluid-electrolyte homeostasis and blood pressure.Authorship 375916Authorship 390968Authorship 406895Authorship 412048Authorship 417555Authorship 433622Authorship 108799124706894Pollock DD, Goldstein RAProceedings of the National Academy of Sciences of the United States of AmericaPollock DD, Goldstein RA. Strong evidence for protein epistasis, weak evidence against it. Proc Natl Acad Sci U S A. 2014 Apr 15; 111(15):E1450.Proc Natl Acad Sci U S A2014-03-20T00:00:002014Strong evidence for protein epistasis, weak evidence against it.Authorship 451211Authorship 4992244Authorship 501601Authorship 509372Authorship 518081Authorship 111447524777980Su S, Wang X, Kapuku GK, Treiber FA, Pollock DM, Harshfield GA, McCall WV, Pollock JSHypertension (Dallas, Tex. : 1979)Su S, Wang X, Kapuku GK, Treiber FA, Pollock DM, Harshfield GA, McCall WV, Pollock JS. Adverse childhood experiences are associated with detrimental hemodynamics and elevated circulating endothelin-1 in adolescents and young adults. Hypertension. 2014 Jul; 64(1):201-7.Hypertension2014-04-28T00:00:002014Adverse childhood experiences are associated with detrimental hemodynamics and elevated circulating endothelin-1 in adolescents and young adults.Authorship 534397Authorship 56032Authorship 578191Authorship 1133774423537068Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RKGenome biologyShaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biol. 2013 Mar 28; 14(3):R28.Genome Biol2013-03-28T00:00:002013The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.Authorship 650025Authorship 114588825121584Wacholder AC, Cox C, Meyer TJ, Ruggiero RP, Vemulapalli V, Damert A, Carbone L, Pollock DDPLoS geneticsWacholder AC, Cox C, Meyer TJ, Ruggiero RP, Vemulapalli V, Damert A, Carbone L, Pollock DD. Inference of transposable element ancestry. PLoS Genet. 2014 Aug; 10(8):e1004482.PLoS Genet2014-08-14T00:00:002014Inference of transposable element ancestry.Authorship 707782Authorship 7082916Authorship 710086Authorship 711455Authorship 726295Authorship 760068Authorship 769955Authorship 799341