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Noah Fierer

TitleProfessor
InstitutionUniversity of Colorado Boulder
DepartmentEcology & Evolutionary Biology
Phone303/492-5615

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Walsh C, Stallard-Olivera E, Fierer N. Nine (not so simple) steps: a practical guide to using machine learning in microbial ecology. mBio. 2024 Feb 14; 15(2):e0205023. PMID: 38126787.
      View in: PubMed
    2. Ramoneda J, Jensen TBN, Price MN, Casamayor EO, Fierer N. Taxonomic and environmental distribution of bacterial amino acid auxotrophies. Nat Commun. 2023 Nov 22; 14(1):7608. PMID: 37993466.
      View in: PubMed
    3. Schrama M, Quist CW, Arjen de Groot G, Cieraad E, Ashworth D, Laros I, Hansen LH, Leff J, Fierer N, Bardgett RD. Cessation of grazing causes biodiversity loss and homogenization of soil food webs. Proc Biol Sci. 2023 Nov 29; 290(2011):20231345. PMID: 37964526.
      View in: PubMed
    4. Philippot L, Chenu C, Kappler A, Rillig MC, Fierer N. The interplay between microbial communities and soil properties. Nat Rev Microbiol. 2024 Apr; 22(4):226-239. PMID: 37863969.
      View in: PubMed
    5. Smets W, Chock MK, Walsh CM, Vanderburgh CQ, Kau E, Lindow SE, Fierer N, Koskella B. Leaf side determines the relative importance of dispersal versus host filtering in the phyllosphere microbiome. mBio. 2023 08 31; 14(4):e0111123. PMID: 37436063.
      View in: PubMed
    6. Fierer N, Walsh CM. Can we manipulate the soil microbiome to promote carbon sequestration in croplands? PLoS Biol. 2023 07; 21(7):e3002207. PMID: 37437031.
      View in: PubMed
    7. Ramoneda J, Stallard-Olivera E, Hoffert M, Winfrey CC, Stadler M, Ni?o-Garc?a JP, Fierer N. Building a genome-based understanding of bacterial pH preferences. Sci Adv. 2023 04 28; 9(17):eadf8998. PMID: 37115929.
      View in: PubMed
    8. Caro TA, McFarlin J, Jech S, Fierer N, Kopf S. Hydrogen stable isotope probing of lipids demonstrates slow rates of microbial growth in soil. Proc Natl Acad Sci U S A. 2023 04 18; 120(16):e2211625120. PMID: 37036980.
      View in: PubMed
    9. Lemoine NP, Adams BJ, Diaz M, Dragone NB, Franco ALC, Fierer N, Lyons WB, Hogg ID, Wall DH. Strong Dispersal Limitation of Microbial Communities at Shackleton Glacier, Antarctica. mSystems. 2023 02 23; 8(1):e0125422. PMID: 36719224.
      View in: PubMed
    10. Dragone NB, Whittaker K, Lord OM, Burke EA, Dufel H, Hite E, Miller F, Page G, Slayback D, Fierer N. The Early Microbial Colonizers of a Short-Lived Volcanic Island in the Kingdom of Tonga. mBio. 2023 02 28; 14(1):e0331322. PMID: 36629429.
      View in: PubMed
    11. Mercaldo RA, Marshall JE, Cangelosi GA, Donohue M, Falkinham JO, Fierer N, French JP, Gebert MJ, Honda JR, Lipner EM, Marras TK, Morimoto K, Salfinger M, Stout J, Thomson R, Prevots DR. Environmental risk of nontuberculous mycobacterial infection: Strategies for advancing methodology. Tuberculosis (Edinb). 2023 03; 139:102305. PMID: 36706504.
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    12. Fierer N, Holland-Moritz H, Alexiev A, Batther H, Dragone NB, Friar L, Gebert MJ, Gering S, Henley JB, Jech S, Kibby EM, Melie T, Patterson WB, Peterson E, Schutz K, Stallard-Olivera E, Sterrett J, Walsh C, Mansfeldt C. A Metagenomic Investigation of Spatial and Temporal Changes in Sewage Microbiomes across a University Campus. mSystems. 2022 Oct 26; 7(5):e0065122. PMID: 36121163.
      View in: PubMed
    13. Madden AA, Oliverio AM, Kearns PJ, Henley JB, Fierer N, Starks PTB, Wolfe BE, Romero LM, Lattin CR. Chronic stress and captivity alter the cloacal microbiome of a wild songbird. J Exp Biol. 2022 04 01; 225(7). PMID: 35311905.
      View in: PubMed
    14. Dragone NB, Henley JB, Holland-Moritz H, Diaz M, Hogg ID, Lyons WB, Wall DH, Adams BJ, Fierer N. Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils. mSystems. 2022 Feb 22; 7(1):e0133021. PMID: 35040702.
      View in: PubMed
    15. Franco ALC, Adams BJ, Diaz MA, Lemoine NP, Dragone NB, Fierer N, Lyons WB, Hogg I, Wall DH. Response of Antarctic soil fauna to climate-driven changes since the Last Glacial Maximum. Glob Chang Biol. 2022 01; 28(2):644-653. PMID: 34657350.
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    16. Chen Y, Gebert MJ, Faith SA, Dunn RR, Fierer N, Barber?n A. Global Patterns and Climatic Controls of Dust-Associated Microbial Communities. Microbiol Spectr. 2021 10 31; 9(2):e0144721. PMID: 34643450.
      View in: PubMed
    17. Webster TM, McFarland A, Gebert MJ, Oliverio AM, Nichols LM, Dunn RR, Hartmann EM, Fierer N. Structure and Functional Attributes of Bacterial Communities in Premise Plumbing Across the United States. Environ Sci Technol. 2021 10 19; 55(20):14105-14114. PMID: 34606240.
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    18. Simonin M, Rocca JD, Gerson JR, Moore E, Brooks AC, Czaplicki L, Ross MRV, Fierer N, Craine JM, Bernhardt ES. Consistent declines in aquatic biodiversity across diverse domains of life in rivers impacted by surface coal mining. Ecol Appl. 2021 09; 31(6):e02389. PMID: 34142402.
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    19. Delgado-Baquerizo M, Eldridge DJ, Liu YR, Sokoya B, Wang JT, Hu HW, He JZ, Bastida F, Moreno JL, Bamigboye AR, Blanco-Pastor JL, Cano-D?az C, Ill?n JG, Makhalanyane TP, Siebe C, Trivedi P, Zaady E, Verma JP, Wang L, Wang J, Grebenc T, Pe?aloza-Bojac? GF, Nahberger TU, Teixido AL, Zhou XQ, Berdugo M, Duran J, Rodr?guez A, Zhou X, Alfaro F, Abades S, Plaza C, Rey A, Singh BK, Tedersoo L, Fierer N. Global homogenization of the structure and function in the soil microbiome of urban greenspaces. Sci Adv. 2021 Jul; 7(28). PMID: 34244148.
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    20. Bueno de Mesquita CP, Nichols LM, Gebert MJ, Vanderburgh C, Bocksberger G, Lester JD, Kalan AK, Dieguez P, McCarthy MS, Agbor A, ?lvarez Varona P, Ayimisin AE, Bessone M, Chancellor R, Cohen H, Coupland C, Deschner T, Egbe VE, Goedmakers A, Granjon AC, Grueter CC, Head J, Hernandez-Aguilar RA, Jeffery KJ, Jones S, Kadam P, Kaiser M, Lapuente J, Larson B, Marrocoli S, Morgan D, Mugerwa B, Mulindahabi F, Neil E, Niyigaba P, Pacheco L, Piel AK, Robbins MM, Rundus A, Sanz CM, Sciaky L, Sheil D, Sommer V, Stewart FA, Ton E, van Schijndel J, Vergnes V, Wessling EG, Wittig RM, Ginath Yuh Y, Yurkiw K, Zuberb?hler K, Gogarten JF, Heintz-Buschart A, Muellner-Riehl AN, Boesch C, K?hl HS, Fierer N, Arandjelovic M, Dunn RR. Structure of Chimpanzee Gut Microbiomes across Tropical Africa. mSystems. 2021 Jun 29; 6(3):e0126920. PMID: 34156289.
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    21. Lekberg Y, Arnillas CA, Borer ET, Bullington LS, Fierer N, Kennedy PG, Leff JW, Luis AD, Seabloom EW, Henning JA. Nitrogen and phosphorus fertilization consistently favor pathogenic over mutualistic fungi in grassland soils. Nat Commun. 2021 06 09; 12(1):3484. PMID: 34108462.
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    22. Walsh CM, Becker-Uncapher I, Carlson M, Fierer N. Variable influences of soil and seed-associated bacterial communities on the assembly of seedling microbiomes. ISME J. 2021 09; 15(9):2748-2762. PMID: 33782567.
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    23. Holland-Moritz H, Stuart JEM, Lewis LR, Miller SN, Mack MC, Ponciano JM, McDaniel SF, Fierer N. The bacterial communities of Alaskan mosses and their contributions to N2-fixation. Microbiome. 2021 02 23; 9(1):53. PMID: 33622403.
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    24. George SF, Fierer N, Levy JS, Adams B. Antarctic Water Tracks: Microbial Community Responses to Variation in Soil Moisture, pH, and Salinity. Front Microbiol. 2021; 12:616730. PMID: 33584618.
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    25. Landis EA, Oliverio AM, McKenney EA, Nichols LM, Kfoury N, Biango-Daniels M, Shell LK, Madden AA, Shapiro L, Sakunala S, Drake K, Robbat A, Booker M, Dunn RR, Fierer N, Wolfe BE. The diversity and function of sourdough starter microbiomes. Elife. 2021 01 26; 10. PMID: 33496265.
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    26. Hammer TJ, Dickerson JC, McMillan WO, Fierer N. Heliconius Butterflies Host Characteristic and Phylogenetically Structured Adult-Stage Microbiomes. Appl Environ Microbiol. 2020 11 24; 86(24). PMID: 33008816.
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    27. Oliverio AM, Bissett A, McGuire K, Saltonstall K, Turner BL, Fierer N. The Role of Phosphorus Limitation in Shaping Soil Bacterial Communities and Their Metabolic Capabilities. mBio. 2020 10 27; 11(5). PMID: 33109755.
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    28. Loupy KM, Cler KE, Marquart BM, Yifru TW, D'Angelo HM, Arnold MR, Elsayed AI, Gebert MJ, Fierer N, Fonken LK, Frank MG, Zambrano CA, Maier SF, Lowry CA. Comparing the effects of two different strains of mycobacteria, Mycobacterium vaccae NCTC 11659 and M. vaccae ATCC 15483, on stress-resilient behaviors and lipid-immune signaling in rats. Brain Behav Immun. 2021 01; 91:212-229. PMID: 33011306.
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    29. McBride SG, Choudoir M, Fierer N, Strickland MS. Volatile organic compounds from leaf litter decomposition alter soil microbial communities and carbon dynamics. Ecology. 2020 10; 101(10):e03130. PMID: 32621285.
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    30. Delgado-Baquerizo M, Reich PB, Bardgett RD, Eldridge DJ, Lambers H, Wardle DA, Reed SC, Plaza C, Png GK, Neuhauser S, Berhe AA, Hart SC, Hu HW, He JZ, Bastida F, Abades S, Alfaro FD, Cutler NA, Gallardo A, Garc?a-Vel?zquez L, Hayes PE, Hseu ZY, P?rez CA, Santos F, Siebe C, Trivedi P, Sullivan BW, Weber-Grullon L, Williams MA, Fierer N. The influence of soil age on ecosystem structure and function across biomes. Nat Commun. 2020 09 18; 11(1):4721. PMID: 32948775.
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    31. Madin JS, Nielsen DA, Brbic M, Corkrey R, Danko D, Edwards K, Engqvist MKM, Fierer N, Geoghegan JL, Gillings M, Kyrpides NC, Litchman E, Mason CE, Moore L, Nielsen SL, Paulsen IT, Price ND, Reddy TBK, Richards MA, Rocha EPC, Schmidt TM, Shaaban H, Shukla M, Supek F, Tetu SG, Vieira-Silva S, Wattam AR, Westfall DA, Westoby M. A synthesis of bacterial and archaeal phenotypic trait data. Sci Data. 2020 06 05; 7(1):170. PMID: 32503990.
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    32. Allwood JS, Fierer N, Dunn RR, Breen M, Reich BJ, Laber EB, Clifton J, Grantham NS, Faith SA. Use of standardized bioinformatics for the analysis of fungal DNA signatures applied to sample provenance. Forensic Sci Int. 2020 May; 310:110250. PMID: 32240935.
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    33. Oliverio AM, Geisen S, Delgado-Baquerizo M, Maestre FT, Turner BL, Fierer N. The global-scale distributions of soil protists and their contributions to belowground systems. Sci Adv. 2020 01; 6(4):eaax8787. PMID: 32042898.
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    34. Carini P, Delgado-Baquerizo M, Hinckley ES, Holland-Moritz H, Brewer TE, Rue G, Vanderburgh C, McKnight D, Fierer N. Effects of Spatial Variability and Relic DNA Removal on the Detection of Temporal Dynamics in Soil Microbial Communities. mBio. 2020 01 21; 11(1). PMID: 31964728.
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    35. Allwood JS, Fierer N, Dunn RR. The Future of Environmental DNA in Forensic Science. Appl Environ Microbiol. 2020 01 07; 86(2). PMID: 31704676.
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    36. Brewer TE, Albertsen M, Edwards A, Kirkegaard RH, Rocha EPC, Fierer N. Unlinked rRNA genes are widespread among bacteria and archaea. ISME J. 2020 02; 14(2):597-608. PMID: 31712737.
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    37. Fierer N. Earthworms' place on Earth. Science. 2019 10 25; 366(6464):425-426. PMID: 31649184.
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    38. Brewer TE, Aronson EL, Arogyaswamy K, Billings SA, Botthoff JK, Campbell AN, Dove NC, Fairbanks D, Gallery RE, Hart SC, Kaye J, King G, Logan G, Lohse KA, Maltz MR, Mayorga E, O'Neill C, Owens SM, Packman A, Pett-Ridge J, Plante AF, Richter DD, Silver WL, Yang WH, Fierer N. Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons. mBio. 2019 10 01; 10(5). PMID: 31575762.
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    39. Nottingham AT, Whitaker J, Ostle NJ, Bardgett RD, McNamara NP, Fierer N, Salinas N, Ccahuana AJQ, Turner BL, Meir P. Microbial responses to warming enhance soil carbon loss following translocation across a tropical forest elevation gradient. Ecol Lett. 2019 Nov; 22(11):1889-1899. PMID: 31489760.
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    40. Webster TM, Fierer N. Microbial Dynamics of Biosand Filters and Contributions of the Microbial Food Web to Effective Treatment of Wastewater-Impacted Water Sources. Appl Environ Microbiol. 2019 09 01; 85(17). PMID: 31227556.
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    41. Walsh CM, Gebert MJ, Delgado-Baquerizo M, Maestre FT, Fierer N. A Global Survey of Mycobacterial Diversity in Soil. Appl Environ Microbiol. 2019 09 01; 85(17). PMID: 31253672.
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    42. Steen AD, Crits-Christoph A, Carini P, DeAngelis KM, Fierer N, Lloyd KG, Cameron Thrash J. High proportions of bacteria and archaea across most biomes remain uncultured. ISME J. 2019 12; 13(12):3126-3130. PMID: 31388130.
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    43. Bastida F, Garc?a C, Fierer N, Eldridge DJ, Bowker MA, Abades S, Alfaro FD, Asefaw Berhe A, Cutler NA, Gallardo A, Garc?a-Vel?zquez L, Hart SC, Hayes PE, Hern?ndez T, Hseu ZY, Jehmlich N, Kirchmair M, Lambers H, Neuhauser S, Pe?a-Ram?rez VM, P?rez CA, Reed SC, Santos F, Siebe C, Sullivan BW, Trivedi P, Vera A, Williams MA, Luis Moreno J, Delgado-Baquerizo M. Global ecological predictors of the soil priming effect. Nat Commun. 2019 08 02; 10(1):3481. PMID: 31375717.
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    44. Lyke MM, Di Fiore A, Fierer N, Madden AA, Lambert JE. Metagenomic analyses reveal previously unrecognized variation in the diets of sympatric Old World monkey species. PLoS One. 2019; 14(6):e0218245. PMID: 31242204.
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    45. Hammer TJ, Sanders JG, Fierer N. Not all animals need a microbiome. FEMS Microbiol Lett. 2019 05 01; 366(10). PMID: 31132110.
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    46. Zinger L, Bonin A, Alsos IG, B?lint M, Bik H, Boyer F, Chariton AA, Creer S, Coissac E, Deagle BE, De Barba M, Dickie IA, Dumbrell AJ, Ficetola GF, Fierer N, Fumagalli L, Gilbert MTP, Jarman S, Jumpponen A, Kauserud H, Orlando L, Pansu J, Pawlowski J, Tedersoo L, Thomsen PF, Willerslev E, Taberlet P. DNA metabarcoding-Need for robust experimental designs to draw sound ecological conclusions. Mol Ecol. 2019 04; 28(8):1857-1862. PMID: 31033079.
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    47. Delgado-Baquerizo M, Bardgett RD, Vitousek PM, Maestre FT, Williams MA, Eldridge DJ, Lambers H, Neuhauser S, Gallardo A, Garc?a-Vel?zquez L, Sala OE, Abades SR, Alfaro FD, Berhe AA, Bowker MA, Currier CM, Cutler NA, Hart SC, Hayes PE, Hseu ZY, Kirchmair M, Pe?a-Ram?rez VM, P?rez CA, Reed SC, Santos F, Siebe C, Sullivan BW, Weber-Grullon L, Fierer N. Changes in belowground biodiversity during ecosystem development. Proc Natl Acad Sci U S A. 2019 04 02; 116(14):6891-6896. PMID: 30877251.
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    48. Choudoir M, Rossabi S, Gebert M, Helmig D, Fierer N. A Phylogenetic and Functional Perspective on Volatile Organic Compound Production by Actinobacteria. mSystems. 2019 Mar-Apr; 4(2). PMID: 30863793.
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    49. Bradford MA, McCulley RL, Crowther TW, Oldfield EE, Wood SA, Fierer N. Cross-biome patterns in soil microbial respiration predictable from evolutionary theory on thermal adaptation. Nat Ecol Evol. 2019 01 14; 3(2):223-231. PMID: 30643243.
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    50. Semchenko M, Leff JW, Lozano YM, Saar S, Davison J, Wilkinson A, Jackson BG, Pritchard WJ, De Long JR, Oakley S, Mason KE, Ostle NJ, Baggs EM, Johnson D, Fierer N, Bardgett RD. Fungal diversity regulates plant-soil feedbacks in temperate grassland. Sci Adv. 2018 11; 4(11):eaau4578. PMID: 30498781.
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    51. Rath KM, Fierer N, Murphy DV, Rousk J. Linking bacterial community composition to soil salinity along environmental gradients. ISME J. 2019 03; 13(3):836-846. PMID: 30446737.
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    52. Gebert MJ, Delgado-Baquerizo M, Oliverio AM, Webster TM, Nichols LM, Honda JR, Chan ED, Adjemian J, Dunn RR, Fierer N. Ecological Analyses of Mycobacteria in Showerhead Biofilms and Their Relevance to Human Health. mBio. 2018 10 30; 9(5). PMID: 30377276.
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    53. Nottingham AT, Fierer N, Turner BL, Whitaker J, Ostle NJ, McNamara NP, Bardgett RD, Leff JW, Salinas N, Silman MR, Kruuk LEB, Meir P. Microbes follow Humboldt: temperature drives plant and soil microbial diversity patterns from the Amazon to the Andes. Ecology. 2018 11; 99(11):2455-2466. PMID: 30076592.
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    54. Ladau J, Shi Y, Jing X, He JS, Chen L, Lin X, Fierer N, Gilbert JA, Pollard KS, Chu H. Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes. mSystems. 2018 Sep-Oct; 3(5). PMID: 30374458.
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    55. Bowman WD, Ayyad A, Bueno de Mesquita CP, Fierer N, Potter TS, Sternagel S. Limited ecosystem recovery from simulated chronic nitrogen deposition. Ecol Appl. 2018 10; 28(7):1762-1772. PMID: 30179279.
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    56. Holland-Moritz H, Stuart J, Lewis LR, Miller S, Mack MC, McDaniel SF, Fierer N. Novel bacterial lineages associated with boreal moss species. Environ Microbiol. 2018 07; 20(7):2625-2638. PMID: 29901277.
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    57. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Gl?ckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2018 07 06; 36(7):660. PMID: 29979671.
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    58. Cameron EK, Martins IS, Lavelle P, Mathieu J, Tedersoo L, Gottschall F, Guerra CA, Hines J, Patoine G, Siebert J, Winter M, Cesarz S, Delgado-Baquerizo M, Ferlian O, Fierer N, Kreft H, Lovejoy TE, Montanarella L, Orgiazzi A, Pereira HM, Phillips HRP, Settele J, Wall DH, Eisenhauer N. Global gaps in soil biodiversity data. Nat Ecol Evol. 2018 07; 2(7):1042-1043. PMID: 29867100.
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    59. Oliverio AM, Power JF, Washburne A, Cary SC, Stott MB, Fierer N. The ecology and diversity of microbial eukaryotes in geothermal springs. ISME J. 2018 08; 12(8):1918-1928. PMID: 29662145.
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    60. Rosario K, Fierer N, Breitbart M. Near-Complete Genome Sequence of a Novel Single-Stranded RNA Virus Discovered in Indoor Air. Genome Announc. 2018 Mar 22; 6(12). PMID: 29567746.
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    61. Leff JW, Bardgett RD, Wilkinson A, Jackson BG, Pritchard WJ, De Long JR, Oakley S, Mason KE, Ostle NJ, Johnson D, Baggs EM, Fierer N. Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits. ISME J. 2018 06; 12(7):1794-1805. PMID: 29523892.
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    62. Ortiz-?lvarez R, Fierer N, de Los R?os A, Casamayor EO, Barber?n A. Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession. ISME J. 2018 06; 12(7):1658-1667. PMID: 29463893.
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    63. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Gl?ckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2018 02 06; 36(2):196. PMID: 29406516.
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    64. Rosario K, Fierer N, Miller S, Luongo J, Breitbart M. Diversity of DNA and RNA Viruses in Indoor Air As Assessed via Metagenomic Sequencing. Environ Sci Technol. 2018 02 06; 52(3):1014-1027. PMID: 29298386.
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    65. Delgado-Baquerizo M, Oliverio AM, Brewer TE, Benavent-Gonz?lez A, Eldridge DJ, Bardgett RD, Maestre FT, Singh BK, Fierer N. A global atlas of the dominant bacteria found in soil. Science. 2018 01 19; 359(6373):320-325. PMID: 29348236.
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    66. Choudoir MJ, Barber?n A, Menninger HL, Dunn RR, Fierer N. Variation in range size and dispersal capabilities of microbial taxa. Ecology. 2018 02; 99(2):322-334. PMID: 29160898.
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    67. Brewer TE, Fierer N. Tales from the tomb: the microbial ecology of exposed rock surfaces. Environ Microbiol. 2018 03; 20(3):958-970. PMID: 29235707.
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    68. Robeson MS, Khanipov K, Golovko G, Wisely SM, White MD, Bodenchuck M, Smyser TJ, Fofanov Y, Fierer N, Piaggio AJ. Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig (Sus scrofa). Ecol Evol. 2018 01; 8(1):185-196. PMID: 29321862.
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    69. Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, V?zquez-Baeza Y, Gonz?lez A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R. A communal catalogue reveals Earth's multiscale microbial diversity. Nature. 2017 11 23; 551(7681):457-463. PMID: 29088705.
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    70. Hammer TJ, Janzen DH, Hallwachs W, Jaffe SP, Fierer N. Caterpillars lack a resident gut microbiome. Proc Natl Acad Sci U S A. 2017 09 05; 114(36):9641-9646. PMID: 28830993.
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    71. Fierer N. Embracing the unknown: disentangling the complexities of the soil microbiome. Nat Rev Microbiol. 2017 Oct; 15(10):579-590. PMID: 28824177.
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    72. Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Gl?ckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2017 Aug 08; 35(8):725-731. PMID: 28787424.
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    162. Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L, Gilbert JA, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren BW, Blaser MJ, Bonazzi V, Booth T, Bork P, Bushman FD, Buttigieg PL, Chain PS, Charlson E, Costello EK, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman JA, Gallery RE, Gevers D, Gibbs RA, San Gil I, Gonzalez A, Gordon JI, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau AL, Kelley ST, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley RE, Lozupone CA, Ludwig W, Lyons D, Maguire E, Meth? BA, Meyer F, Muegge B, Nakielny S, Nelson KE, Nemergut D, Neufeld JD, Newbold LK, Oliver AE, Pace NR, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman DA, Assunta-Sansone S, Schloss PD, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje JM, Ward DV, Weinstock GM, Wendel D, White O, Whiteley A, Wilke A, Wortman JR, Yatsunenko T, Gl?ckner FO. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotechnol. 2011 May; 29(5):415-20. PMID: 21552244.
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    163. Fierer N, McCain CM, Meir P, Zimmermann M, Rapp JM, Silman MR, Knight R. Microbes do not follow the elevational diversity patterns of plants and animals. Ecology. 2011 Apr; 92(4):797-804. PMID: 21661542.
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    164. Walters WA, Caporaso JG, Lauber CL, Berg-Lyons D, Fierer N, Knight R. PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers. Bioinformatics. 2011 Apr 15; 27(8):1159-61. PMID: 21349862.
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    165. Fierer N, Lennon JT. The generation and maintenance of diversity in microbial communities. Am J Bot. 2011 Mar; 98(3):439-48. PMID: 21613137.
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    166. Caporaso JG, Lauber CL, Costello EK, Berg-Lyons D, Gonzalez A, Stombaugh J, Knights D, Gajer P, Ravel J, Fierer N, Gordon JI, Knight R. Moving pictures of the human microbiome. Genome Biol. 2011; 12(5):R50. PMID: 21624126.
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    167. Nemergut DR, Costello EK, Hamady M, Lozupone C, Jiang L, Schmidt SK, Fierer N, Townsend AR, Cleveland CC, Stanish L, Knight R. Global patterns in the biogeography of bacterial taxa. Environ Microbiol. 2011 Jan; 13(1):135-144. PMID: 21199253.
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    168. Gilbert JA, Meyer F, Jansson J, Gordon J, Pace N, Tiedje J, Ley R, Fierer N, Field D, Kyrpides N, Gl?ckner FO, Klenk HP, Wommack KE, Glass E, Docherty K, Gallery R, Stevens R, Knight R. The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010. Stand Genomic Sci. 2010 Dec 25; 3(3):249-53. PMID: 21304728.
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    169. Bates ST, Cropsey GW, Caporaso JG, Knight R, Fierer N. Bacterial communities associated with the lichen symbiosis. Appl Environ Microbiol. 2011 Feb; 77(4):1309-14. PMID: 21169444.
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    170. Ramirez KS, Lauber CL, Knight R, Bradford MA, Fierer N. Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems. Ecology. 2010 Dec; 91(12):3463-70; discussion 3503-14. PMID: 21302816.
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    171. Bates ST, Berg-Lyons D, Caporaso JG, Walters WA, Knight R, Fierer N. Examining the global distribution of dominant archaeal populations in soil. ISME J. 2011 May; 5(5):908-17. PMID: 21085198.
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    172. Bowers RM, McLetchie S, Knight R, Fierer N. Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments. ISME J. 2011 Apr; 5(4):601-12. PMID: 21048802.
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    173. Redford AJ, Bowers RM, Knight R, Linhart Y, Fierer N. The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves. Environ Microbiol. 2010 Nov; 12(11):2885-93. PMID: 20545741.
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    174. Chu H, Fierer N, Lauber CL, Caporaso JG, Knight R, Grogan P. Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes. Environ Microbiol. 2010 Nov; 12(11):2998-3006. PMID: 20561020.
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    175. Kuczynski J, Liu Z, Lozupone C, McDonald D, Fierer N, Knight R. Microbial community resemblance methods differ in their ability to detect biologically relevant patterns. Nat Methods. 2010 Oct; 7(10):813-9. PMID: 20818378.
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    176. Fierer N, Nemergut D, Knight R, Craine JM. Changes through time: integrating microorganisms into the study of succession. Res Microbiol. 2010 Oct; 161(8):635-42. PMID: 20599610.
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    177. Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, Knight R. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci U S A. 2010 Jun 29; 107(26):11971-5. PMID: 20566857.
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    178. Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A. 2011 Mar 15; 108 Suppl 1:4516-22. PMID: 20534432.
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    179. Rousk J, B??th E, Brookes PC, Lauber CL, Lozupone C, Caporaso JG, Knight R, Fierer N. Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J. 2010 Oct; 4(10):1340-51. PMID: 20445636.
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    180. Kuczynski J, Costello EK, Nemergut DR, Zaneveld J, Lauber CL, Knights D, Koren O, Fierer N, Kelley ST, Ley RE, Gordon JI, Knight R. Direct sequencing of the human microbiome readily reveals community differences. Genome Biol. 2010; 11(5):210. PMID: 20441597.
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    181. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pe?a AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010 May; 7(5):335-6. PMID: 20383131.
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    182. Hofmockel KS, Fierer N, Colman BP, Jackson RB. Amino acid abundance and proteolytic potential in North American soils. Oecologia. 2010 Aug; 163(4):1069-78. PMID: 20349250.
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    183. Lauber CL, Zhou N, Gordon JI, Knight R, Fierer N. Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples. FEMS Microbiol Lett. 2010 Jun; 307(1):80-6. PMID: 20412303.
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    184. Fierer N, Lauber CL, Zhou N, McDonald D, Costello EK, Knight R. Forensic identification using skin bacterial communities. Proc Natl Acad Sci U S A. 2010 Apr 06; 107(14):6477-81. PMID: 20231444.
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    185. Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R. Bacterial community variation in human body habitats across space and time. Science. 2009 Dec 18; 326(5960):1694-7. PMID: 19892944.
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    186. Fierer N, Strickland MS, Liptzin D, Bradford MA, Cleveland CC. Global patterns in belowground communities. Ecol Lett. 2009 Nov; 12(11):1238-49. PMID: 19674041.
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    187. Bowers RM, Lauber CL, Wiedinmyer C, Hamady M, Hallar AG, Fall R, Knight R, Fierer N. Characterization of airborne microbial communities at a high-elevation site and their potential to act as atmospheric ice nuclei. Appl Environ Microbiol. 2009 Aug; 75(15):5121-30. PMID: 19502432.
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    188. Lauber CL, Hamady M, Knight R, Fierer N. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol. 2009 Aug; 75(15):5111-20. PMID: 19502440.
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    189. Fierer N, Carney KM, Horner-Devine MC, Megonigal JP. The biogeography of ammonia-oxidizing bacterial communities in soil. Microb Ecol. 2009 Aug; 58(2):435-45. PMID: 19352770.
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    190. Redford AJ, Fierer N. Bacterial succession on the leaf surface: a novel system for studying successional dynamics. Microb Ecol. 2009 Jul; 58(1):189-98. PMID: 19221834.
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    191. Strickland MS, Lauber C, Fierer N, Bradford MA. Testing the functional significance of microbial community composition. Ecology. 2009 Feb; 90(2):441-51. PMID: 19323228.
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    192. Jones RT, Robeson MS, Lauber CL, Hamady M, Knight R, Fierer N. A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME J. 2009 Apr; 3(4):442-53. PMID: 19129864.
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    193. Fierer N, Hamady M, Lauber CL, Knight R. The influence of sex, handedness, and washing on the diversity of hand surface bacteria. Proc Natl Acad Sci U S A. 2008 Nov 18; 105(46):17994-9. PMID: 19004758.
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    194. Nemergut DR, Townsend AR, Sattin SR, Freeman KR, Fierer N, Neff JC, Bowman WD, Schadt CW, Weintraub MN, Schmidt SK. The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling. Environ Microbiol. 2008 Nov; 10(11):3093-105. PMID: 18764871.
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    195. Fierer N. Tilting at windmills: a response to a recent critique of terminal restriction fragment length polymorphism data. Appl Environ Microbiol. 2007 Dec; 73(24):8041; author reply 8041-2. PMID: 18073327.
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    196. Fierer N, Liu Z, Rodr?guez-Hern?ndez M, Knight R, Henn M, Hernandez MT. Short-term temporal variability in airborne bacterial and fungal populations. Appl Environ Microbiol. 2008 Jan; 74(1):200-7. PMID: 17981945.
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    197. Fierer N, Breitbart M, Nulton J, Salamon P, Lozupone C, Jones R, Robeson M, Edwards RA, Felts B, Rayhawk S, Knight R, Rohwer F, Jackson RB. Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil. Appl Environ Microbiol. 2007 Nov; 73(21):7059-66. PMID: 17827313.
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    198. Fierer N, Morse JL, Berthrong ST, Bernhardt ES, Jackson RB. Environmental controls on the landscape-scale biogeography of stream bacterial communities. Ecology. 2007 Sep; 88(9):2162-73. PMID: 17918395.
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    199. Craine JM, Morrow C, Fierer N. Microbial nitrogen limitation increases decomposition. Ecology. 2007 Aug; 88(8):2105-13. PMID: 17824441.
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    200. Fierer N, Bradford MA, Jackson RB. Toward an ecological classification of soil bacteria. Ecology. 2007 Jun; 88(6):1354-64. PMID: 17601128.
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    201. Fierer N, Jackson RB. The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci U S A. 2006 Jan 17; 103(3):626-31. PMID: 16407148.
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    202. Fierer N, Jackson JA, Vilgalys R, Jackson RB. Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays. Appl Environ Microbiol. 2005 Jul; 71(7):4117-20. PMID: 16000830.
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    203. Fierer N, Schimel JP, Holden PA. Influence of drying-rewetting frequency on soil bacterial community structure. Microb Ecol. 2003 Jan; 45(1):63-71. PMID: 12469245.
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    204. Fierer NG, Gabet EJ. Carbon and nitrogen losses by surface runoff following changes in vegetation. J Environ Qual. 2002 Jul-Aug; 31(4):1207-13. PMID: 12175038.
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