 Connection
Jeffrey Kieft to Nucleic Acid Conformation
This is a "connection" page, showing publications Jeffrey Kieft has written about Nucleic Acid Conformation.
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Connection Strength |
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8.406 |
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Bonilla SL, Kieft JS. The promise of cryo-EM to explore RNA structural dynamics. J Mol Biol. 2022 09 30; 434(18):167802.
Score: 0.643
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Steckelberg AL, Vicens Q, Costantino DA, Nix JC, Kieft JS. The crystal structure of a Polerovirus exoribonuclease-resistant RNA shows how diverse sequences are integrated into a conserved fold. RNA. 2020 12; 26(12):1767-1776.
Score: 0.560
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Akiyama BM, Eiler D, Kieft JS. Structured RNAs that evade or confound exonucleases: function follows form. Curr Opin Struct Biol. 2016 Feb; 36:40-7.
Score: 0.406
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Ruehle MD, Zhang H, Sheridan RM, Mitra S, Chen Y, Gonzalez RL, Cooperman BS, Kieft JS. A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation. Elife. 2015 Nov 02; 4.
Score: 0.401
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Kieft JS. Experiences gathered and lessons learned from 20 years of RNA structure. RNA. 2015 Apr; 21(4):661-3.
Score: 0.385
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Colussi TM, Costantino DA, Zhu J, Donohue JP, Korostelev AA, Jaafar ZA, Plank TD, Noller HF, Kieft JS. Initiation of translation in bacteria by a structured eukaryotic IRES RNA. Nature. 2015 Mar 05; 519(7541):110-3.
Score: 0.381
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Colussi TM, Costantino DA, Hammond JA, Ruehle GM, Nix JC, Kieft JS. The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA. Nature. 2014 Jul 17; 511(7509):366-9.
Score: 0.364
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Chapman EG, Costantino DA, Rabe JL, Moon SL, Wilusz J, Nix JC, Kieft JS. The structural basis of pathogenic subgenomic flavivirus RNA (sfRNA) production. Science. 2014 Apr 18; 344(6181):307-10.
Score: 0.360
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Plank TD, Kieft JS. The structures of nonprotein-coding RNAs that drive internal ribosome entry site function. Wiley Interdiscip Rev RNA. 2012 Mar-Apr; 3(2):195-212.
Score: 0.308
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Filbin ME, Kieft JS. HCV IRES domain IIb affects the configuration of coding RNA in the 40S subunit's decoding groove. RNA. 2011 Jul; 17(7):1258-73.
Score: 0.295
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Hammond JA, Rambo RP, Filbin ME, Kieft JS. Comparison and functional implications of the 3D architectures of viral tRNA-like structures. RNA. 2009 Feb; 15(2):294-307.
Score: 0.251
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Kieft JS. Comparing the three-dimensional structures of Dicistroviridae IGR IRES RNAs with other viral RNA structures. Virus Res. 2009 Feb; 139(2):148-56.
Score: 0.243
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Keel AY, Rambo RP, Batey RT, Kieft JS. A general strategy to solve the phase problem in RNA crystallography. Structure. 2007 Jul; 15(7):761-72.
Score: 0.225
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Pfingsten JS, Costantino DA, Kieft JS. Conservation and diversity among the three-dimensional folds of the Dicistroviridae intergenic region IRESes. J Mol Biol. 2007 Jul 27; 370(5):856-69.
Score: 0.223
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Kieft JS, Costantino DA, Filbin ME, Hammond J, Pfingsten JS. Structural methods for studying IRES function. Methods Enzymol. 2007; 430:333-71.
Score: 0.217
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Sherlock ME, Langeberg CJ, Kieft JS. Diversity and modularity of tyrosine-accepting tRNA-like structures. RNA. 2024 02 16; 30(3):213-222.
Score: 0.178
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Kieft JS, Zhou K, Grech A, Jubin R, Doudna JA. Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation. Nat Struct Biol. 2002 May; 9(5):370-4.
Score: 0.157
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Bonilla SL, Sherlock ME, MacFadden A, Kieft JS. A viral RNA hijacks host machinery using dynamic conformational changes of a tRNA-like structure. Science. 2021 Nov 19; 374(6570):955-960.
Score: 0.152
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Akiyama BM, Graham ME, O Donoghue Z, Beckham JD, Kieft JS. Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication. Nucleic Acids Res. 2021 07 09; 49(12):7122-7138.
Score: 0.149
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Langeberg CJ, Sherlock ME, MacFadden A, Kieft JS. An expanded class of histidine-accepting viral tRNA-like structures. RNA. 2021 06; 27(6):653-664.
Score: 0.146
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Szucs MJ, Nichols PJ, Jones RA, Vicens Q, Kieft JS. A New Subclass of Exoribonuclease-Resistant RNA Found in Multiple Genera of Flaviviridae. mBio. 2020 09 29; 11(5).
Score: 0.141
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Hartwick EW, Costantino DA, MacFadden A, Nix JC, Tian S, Das R, Kieft JS. Ribosome-induced RNA conformational changes in a viral 3'-UTR sense and regulate translation levels. Nat Commun. 2018 11 29; 9(1):5074.
Score: 0.124
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Steckelberg AL, Akiyama BM, Costantino DA, Sit TL, Nix JC, Kieft JS. A folded viral noncoding RNA blocks host cell exoribonucleases through a conformationally dynamic RNA structure. Proc Natl Acad Sci U S A. 2018 06 19; 115(25):6404-6409.
Score: 0.120
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MacFadden A, O'Donoghue Z, Silva PAGC, Chapman EG, Olsthoorn RC, Sterken MG, Pijlman GP, Bredenbeek PJ, Kieft JS. Mechanism and structural diversity of exoribonuclease-resistant RNA structures in flaviviral RNAs. Nat Commun. 2018 01 09; 9(1):119.
Score: 0.117
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Akiyama BM, Laurence HM, Massey AR, Costantino DA, Xie X, Yang Y, Shi PY, Nix JC, Beckham JD, Kieft JS. Zika virus produces noncoding RNAs using a multi-pseudoknot structure that confounds a cellular exonuclease. Science. 2016 12 02; 354(6316):1148-1152.
Score: 0.108
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Batey RT, Kieft JS. Soaking Hexammine Cations into RNA Crystals to Obtain Derivatives for Phasing Diffraction Data. Methods Mol Biol. 2016; 1320:219-32.
Score: 0.101
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Kieft JS, Rabe JL, Chapman EG. New hypotheses derived from the structure of a flaviviral Xrn1-resistant RNA: Conservation, folding, and host adaptation. RNA Biol. 2015; 12(11):1169-77.
Score: 0.099
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Hao Y, Kieft JS. Diverse self-association properties within a family of phage packaging RNAs. RNA. 2014 Nov; 20(11):1759-74.
Score: 0.093
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Chapman EG, Moon SL, Wilusz J, Kieft JS. RNA structures that resist degradation by Xrn1 produce a pathogenic Dengue virus RNA. Elife. 2014 Apr 01; 3:e01892.
Score: 0.090
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Plank TD, Whitehurst JT, Kieft JS. Cell type specificity and structural determinants of IRES activity from the 5' leaders of different HIV-1 transcripts. Nucleic Acids Res. 2013 Jul; 41(13):6698-714.
Score: 0.084
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Filbin ME, Vollmar BS, Shi D, Gonen T, Kieft JS. HCV IRES manipulates the ribosome to promote the switch from translation initiation to elongation. Nat Struct Mol Biol. 2013 Feb; 20(2):150-8.
Score: 0.082
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Keel AY, Jha BK, Kieft JS. Structural architecture of an RNA that competitively inhibits RNase L. RNA. 2012 Jan; 18(1):88-99.
Score: 0.076
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Zhu J, Korostelev A, Costantino DA, Donohue JP, Noller HF, Kieft JS. Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome. Proc Natl Acad Sci U S A. 2011 Feb 01; 108(5):1839-44.
Score: 0.072
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Kieft JS, Chase E, Costantino DA, Golden BL. Identification and characterization of anion binding sites in RNA. RNA. 2010 Jun; 16(6):1118-23.
Score: 0.068
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Hammond JA, Rambo RP, Kieft JS. Multi-domain packing in the aminoacylatable 3' end of a plant viral RNA. J Mol Biol. 2010 Jun 11; 399(3):450-63.
Score: 0.068
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Keel AY, Easton LE, Lukavsky PJ, Kieft JS. Large-scale native preparation of in vitro transcribed RNA. Methods Enzymol. 2009; 469:3-25.
Score: 0.066
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Pfingsten JS, Castile AE, Kieft JS. Mechanistic role of structurally dynamic regions in Dicistroviridae IGR IRESs. J Mol Biol. 2010 Jan 08; 395(1):205-17.
Score: 0.066
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Kieft J, Martinez-Salas E. Preface: functionally critical RNA structures found in positive-sense RNA viruses. Virus Res. 2009 Feb; 139(2):135-6.
Score: 0.061
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Kieft JS. Viral IRES RNA structures and ribosome interactions. Trends Biochem Sci. 2008 Jun; 33(6):274-83.
Score: 0.060
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Costantino DA, Pfingsten JS, Rambo RP, Kieft JS. tRNA-mRNA mimicry drives translation initiation from a viral IRES. Nat Struct Mol Biol. 2008 Jan; 15(1):57-64.
Score: 0.058
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Batey RT, Kieft JS. Improved native affinity purification of RNA. RNA. 2007 Aug; 13(8):1384-9.
Score: 0.056
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Pfingsten JS, Costantino DA, Kieft JS. Structural basis for ribosome recruitment and manipulation by a viral IRES RNA. Science. 2006 Dec 01; 314(5804):1450-4.
Score: 0.054
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Costantino D, Kieft JS. A preformed compact ribosome-binding domain in the cricket paralysis-like virus IRES RNAs. RNA. 2005 Mar; 11(3):332-43.
Score: 0.048
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Kieft JS, Batey RT. A general method for rapid and nondenaturing purification of RNAs. RNA. 2004 Jun; 10(6):988-95.
Score: 0.045
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Nichols PJ, Bevers S, Henen MA, Kieft JS, Vicens Q, V?geli B. Adoption of A-Z Junctions in RNAs by Binding of Za Domains. Methods Mol Biol. 2023; 2651:251-275.
Score: 0.041
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Khan YA, Loughran G, Steckelberg AL, Brown K, Kiniry SJ, Stewart H, Baranov PV, Kieft JS, Firth AE, Atkins JF. Evaluating ribosomal frameshifting in CCR5 mRNA decoding. Nature. 2022 04; 604(7906):E16-E23.
Score: 0.039
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Nichols PJ, Bevers S, Henen M, Kieft JS, Vicens Q, V?geli B. Recognition of non-CpG repeats in Alu and ribosomal RNAs by the Z-RNA binding domain of ADAR1 induces A-Z junctions. Nat Commun. 2021 02 04; 12(1):793.
Score: 0.036
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Kieft JS, Zhou K, Jubin R, Doudna JA. Mechanism of ribosome recruitment by hepatitis C IRES RNA. RNA. 2001 Feb; 7(2):194-206.
Score: 0.036
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Kieft JS, Grech A, Adams P, Doudna JA. Mechanisms of internal ribosome entry in translation initiation. Cold Spring Harb Symp Quant Biol. 2001; 66:277-83.
Score: 0.036
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Kieft JS, Zhou K, Jubin R, Murray MG, Lau JY, Doudna JA. The hepatitis C virus internal ribosome entry site adopts an ion-dependent tertiary fold. J Mol Biol. 1999 Sep 24; 292(3):513-29.
Score: 0.033
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Yesselman JD, Eiler D, Carlson ED, Gotrik MR, d'Aquino AE, Ooms AN, Kladwang W, Carlson PD, Shi X, Costantino DA, Herschlag D, Lucks JB, Jewett MC, Kieft JS, Das R. Computational design of three-dimensional RNA structure and function. Nat Nanotechnol. 2019 09; 14(9):866-873.
Score: 0.033
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Vicens Q, Kieft JS, Rissland OS. Revisiting the Closed-Loop Model and the Nature of mRNA 5'-3' Communication. Mol Cell. 2018 12 06; 72(5):805-812.
Score: 0.031
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Tinoco I, Kieft JS. The ion core in RNA folding. Nat Struct Biol. 1997 Jul; 4(7):509-12.
Score: 0.028
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Kieft JS, Tinoco I. Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine. Structure. 1997 May 15; 5(5):713-21.
Score: 0.028
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Vallejos M, Deforges J, Plank TD, Letelier A, Ramdohr P, Abraham CG, Valiente-Echeverr?a F, Kieft JS, Sargueil B, L?pez-Lastra M. Activity of the human immunodeficiency virus type 1 cell cycle-dependent internal ribosomal entry site is modulated by IRES trans-acting factors. Nucleic Acids Res. 2011 Aug; 39(14):6186-200.
Score: 0.018
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Lee SJ, Hyun S, Kieft JS, Yu J. An approach to the construction of tailor-made amphiphilic peptides that strongly and selectively bind to hairpin RNA targets. J Am Chem Soc. 2009 Feb 18; 131(6):2224-30.
Score: 0.016
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Rijnbrand R, Bredenbeek PJ, Haasnoot PC, Kieft JS, Spaan WJ, Lemon SM. The influence of downstream protein-coding sequence on internal ribosome entry on hepatitis C virus and other flavivirus RNAs. RNA. 2001 Apr; 7(4):585-97.
Score: 0.009
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Spahn CM, Kieft JS, Grassucci RA, Penczek PA, Zhou K, Doudna JA, Frank J. Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit. Science. 2001 Mar 09; 291(5510):1959-62.
Score: 0.009
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Jubin R, Vantuno NE, Kieft JS, Murray MG, Doudna JA, Lau JY, Baroudy BM. Hepatitis C virus internal ribosome entry site (IRES) stem loop IIId contains a phylogenetically conserved GGG triplet essential for translation and IRES folding. J Virol. 2000 Nov; 74(22):10430-7.
Score: 0.009
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Connection Strength
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Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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