 Connection
Mair Churchill to DNA
This is a "connection" page, showing publications Mair Churchill has written about DNA.
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Connection Strength |
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3.068 |
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Rosas R, Aguilar RR, Arslanovic N, Seck A, Smith DJ, Tyler JK, Churchill MEA. A novel single alpha-helix DNA-binding domain in CAF-1 promotes gene silencing and DNA damage survival through tetrasome-length DNA selectivity and spacer function. Elife. 2023 07 11; 12.
Score: 0.509
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Liu WH, Roemer SC, Port AM, Churchill ME. CAF-1-induced oligomerization of histones H3/H4 and mutually exclusive interactions with Asf1 guide H3/H4 transitions among histone chaperones and DNA. Nucleic Acids Res. 2012 12; 40(22):11229-39.
Score: 0.241
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Donham DC, Scorgie JK, Churchill ME. The activity of the histone chaperone yeast Asf1 in the assembly and disassembly of histone H3/H4-DNA complexes. Nucleic Acids Res. 2011 Jul; 39(13):5449-58.
Score: 0.217
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Churchill MEA, Klass J, Zoetewey DL. Structural analysis of HMGD-DNA complexes reveals influence of intercalation on sequence selectivity and DNA bending. J Mol Biol. 2010 Oct 15; 403(1):88-102.
Score: 0.208
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Roemer SC, Donham DC, Sherman L, Pon VH, Edwards DP, Churchill ME. Structure of the progesterone receptor-deoxyribonucleic acid complex: novel interactions required for binding to half-site response elements. Mol Endocrinol. 2006 Dec; 20(12):3042-52.
Score: 0.158
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Klass J, Murphy FV, Fouts S, Serenil M, Changela A, Siple J, Churchill ME. The role of intercalating residues in chromosomal high-mobility-group protein DNA binding, bending and specificity. Nucleic Acids Res. 2003 Jun 01; 31(11):2852-64.
Score: 0.126
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Churchill ME. Watching flipping junctions. Nat Struct Biol. 2003 Feb; 10(2):73-5.
Score: 0.123
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Dow LK, Jones DN, Wolfe SA, Verdine GL, Churchill ME. Structural studies of the high mobility group globular domain and basic tail of HMG-D bound to disulfide cross-linked DNA. Biochemistry. 2000 Aug 15; 39(32):9725-36.
Score: 0.104
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Murphy FV, Churchill ME. Nonsequence-specific DNA recognition: a structural perspective. Structure. 2000 Apr 15; 8(4):R83-9.
Score: 0.102
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Murphy FV, Sweet RM, Churchill ME. The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition. EMBO J. 1999 Dec 01; 18(23):6610-8.
Score: 0.099
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Murphy FV, Sehy JV, Dow LK, Gao YG, Churchill ME. Co-crystallization and preliminary crystallographic analysis of the high mobility group domain of HMG-D bound to DNA. Acta Crystallogr D Biol Crystallogr. 1999 Sep; 55(Pt 9):1594-7.
Score: 0.097
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Churchill ME, Changela A, Dow LK, Krieg AJ. Interactions of high mobility group box proteins with DNA and chromatin. Methods Enzymol. 1999; 304:99-133.
Score: 0.093
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Dow LK, Changela A, Hefner HE, Churchill ME. Oxidation of a critical methionine modulates DNA binding of the Drosophila melanogaster high mobility group protein, HMG-D. FEBS Lett. 1997 Sep 15; 414(3):514-20.
Score: 0.085
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Sánchez-Giraldo R, Acosta-Reyes FJ, Malarkey CS, Saperas N, Churchill ME, Campos JL. Two high-mobility group box domains act together to underwind and kink DNA. Acta Crystallogr D Biol Crystallogr. 2015 Jul; 71(Pt 7):1423-32.
Score: 0.073
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Churchill ME, Jones DN, Glaser T, Hefner H, Searles MA, Travers AA. HMG-D is an architecture-specific protein that preferentially binds to DNA containing the dinucleotide TG. EMBO J. 1995 Mar 15; 14(6):1264-75.
Score: 0.071
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Ner SS, Travers AA, Churchill ME. Harnessing the writhe: a role for DNA chaperones in nucleoprotein-complex formation. Trends Biochem Sci. 1994 May; 19(5):185-7.
Score: 0.067
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Travers AA, Ner SS, Churchill ME. DNA chaperones: a solution to a persistence problem? Cell. 1994 Apr 22; 77(2):167-9.
Score: 0.067
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Wysoczynski CL, Roemer SC, Dostal V, Barkley RM, Churchill ME, Malarkey CS. Reversed-phase ion-pair liquid chromatography method for purification of duplex DNA with single base pair resolution. Nucleic Acids Res. 2013 Nov; 41(20):e194.
Score: 0.064
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Pollock DD, de Koning AP, Kim H, Castoe TA, Churchill ME, Kechris KJ. Bayesian analysis of high-throughput quantitative measurement of protein-DNA interactions. PLoS One. 2011; 6(11):e26105.
Score: 0.057
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Churchill ME, Travers AA. Protein motifs that recognize structural features of DNA. Trends Biochem Sci. 1991 Mar; 16(3):92-7.
Score: 0.054
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Churchill ME, Chen L. Structural basis of acyl-homoserine lactone-dependent signaling. Chem Rev. 2011 Jan 12; 111(1):68-85.
Score: 0.053
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Churchill ME, Hayes JJ, Tullius TD. Detection of drug binding to DNA by hydroxyl radical footprinting. Relationship of distamycin binding sites to DNA structure and positioned nucleosomes on 5S RNA genes of Xenopus. Biochemistry. 1990 Jun 26; 29(25):6043-50.
Score: 0.052
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Churchill ME, Suzuki M. 'SPKK' motifs prefer to bind to DNA at A/T-rich sites. EMBO J. 1989 Dec 20; 8(13):4189-95.
Score: 0.050
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English CM, Maluf NK, Tripet B, Churchill ME, Tyler JK. ASF1 binds to a heterodimer of histones H3 and H4: a two-step mechanism for the assembly of the H3-H4 heterotetramer on DNA. Biochemistry. 2005 Oct 25; 44(42):13673-82.
Score: 0.037
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Dragan AI, Read CM, Makeyeva EN, Milgotina EI, Churchill ME, Crane-Robinson C, Privalov PL. DNA binding and bending by HMG boxes: energetic determinants of specificity. J Mol Biol. 2004 Oct 15; 343(2):371-93.
Score: 0.035
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Melvin VS, Harrell C, Adelman JS, Kraus WL, Churchill M, Edwards DP. The role of the C-terminal extension (CTE) of the estrogen receptor alpha and beta DNA binding domain in DNA binding and interaction with HMGB. J Biol Chem. 2004 Apr 09; 279(15):14763-71.
Score: 0.033
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Dragan AI, Klass J, Read C, Churchill ME, Crane-Robinson C, Privalov PL. DNA binding of a non-sequence-specific HMG-D protein is entropy driven with a substantial non-electrostatic contribution. J Mol Biol. 2003 Aug 22; 331(4):795-813.
Score: 0.032
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Melvin VS, Roemer SC, Churchill ME, Edwards DP. The C-terminal extension (CTE) of the nuclear hormone receptor DNA binding domain determines interactions and functional response to the HMGB-1/-2 co-regulatory proteins. J Biol Chem. 2002 Jul 12; 277(28):25115-24.
Score: 0.029
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Scavetta RD, Thomas CB, Walsh MA, Szegedi S, Joachimiak A, Gumport RI, Churchill ME. Structure of RsrI methyltransferase, a member of the N6-adenine beta class of DNA methyltransferases. Nucleic Acids Res. 2000 Oct 15; 28(20):3950-61.
Score: 0.026
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Sleven H, Welsh SJ, Yu J, Churchill MEA, Wright CF, Henderson A, Horvath R, Rankin J, Vogt J, Magee A, McConnell V, Green A, King MD, Cox H, Armstrong L, Lehman A, Nelson TN, Williams J, Clouston P, Hagman J, Németh AH. De Novo Mutations in EBF3 Cause a Neurodevelopmental Syndrome. Am J Hum Genet. 2017 Jan 05; 100(1):138-150.
Score: 0.020
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Wolfe SA, Ferentz AE, Grantcharova V, Churchill ME, Verdine GL. Modifying the helical structure of DNA by design: recruitment of an architecture-specific protein to an enforced DNA bend. Chem Biol. 1995 Apr; 2(4):213-21.
Score: 0.018
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Hill KK, Roemer SC, Churchill ME, Edwards DP. Structural and functional analysis of domains of the progesterone receptor. Mol Cell Endocrinol. 2012 Jan 30; 348(2):418-29.
Score: 0.014
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Guo Q, Lu M, Churchill ME, Tullius TD, Kallenbach NR. Asymmetric structure of a three-arm DNA junction. Biochemistry. 1990 Dec 11; 29(49):10927-34.
Score: 0.013
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Chen JH, Churchill ME, Tullius TD, Kallenbach NR, Seeman NC. Construction and analysis of monomobile DNA junctions. Biochemistry. 1988 Aug 09; 27(16):6032-8.
Score: 0.011
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Roemer SC, Adelman J, Churchill ME, Edwards DP. Mechanism of high-mobility group protein B enhancement of progesterone receptor sequence-specific DNA binding. Nucleic Acids Res. 2008 Jun; 36(11):3655-66.
Score: 0.011
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Lampe DJ, Churchill ME, Robertson HM. A purified mariner transposase is sufficient to mediate transposition in vitro. EMBO J. 1996 Oct 01; 15(19):5470-9.
Score: 0.005
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Jones DN, Searles MA, Shaw GL, Churchill ME, Ner SS, Keeler J, Travers AA, Neuhaus D. The solution structure and dynamics of the DNA-binding domain of HMG-D from Drosophila melanogaster. Structure. 1994 Jul 15; 2(7):609-27.
Score: 0.004
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Ner SS, Churchill ME, Searles MA, Travers AA. dHMG-Z, a second HMG-1-related protein in Drosophila melanogaster. Nucleic Acids Res. 1993 Sep 11; 21(18):4369-71.
Score: 0.004
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Vrana KE, Churchill ME, Tullius TD, Brown DD. Mapping functional regions of transcription factor TFIIIA. Mol Cell Biol. 1988 Apr; 8(4):1684-96.
Score: 0.003
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Connection Strength
The connection strength for concepts is the sum of the scores for each matching publication.
Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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