 Connection
John Lovell to Genome, Plant
This is a "connection" page, showing publications John Lovell has written about Genome, Plant.
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Connection Strength |
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5.859 |
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Lovell JT, Walstead R, Lawrence A, Stark-Dykema E, Farnitano MC, Harder A, Bruna T, Barry K, Goodstein D, Jenkins J, Lipzen A, Boston L, Webber J, Chovatia M, Eichenberger J, Talag J, Grimwood J, Schmutz J, Kelly JK, Sweigart AL, Fishman L, Willis JH. Comparative Analyses of Four Reference Genomes Reveal Exceptional Diversity and Weak Linked Selection in the Yellow Monkeyflower (Mimulus guttatus) Complex. Mol Ecol Resour. 2025 Nov; 25(8):e70012.
Score: 0.936
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Grabowski PP, Dang P, Jenkins JJ, Sreedasyam A, Webber J, Lamb M, Zhang Q, Sanz-Saez A, Feng Y, Bunting V, Talag J, Clevenger J, Ozias-Akins P, Holbrook CC, Chu Y, Grimwood J, Schmutz J, Chen C, Lovell JT. Relics of interspecific hybridization retained in the genome of a drought-adapted peanut cultivar. G3 (Bethesda). 2024 Nov 06; 14(11).
Score: 0.891
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Lovell JT, Bentley NB, Bhattarai G, Jenkins JW, Sreedasyam A, Alarcon Y, Bock C, Boston LB, Carlson J, Cervantes K, Clermont K, Duke S, Krom N, Kubenka K, Mamidi S, Mattison CP, Monteros MJ, Pisani C, Plott C, Rajasekar S, Rhein HS, Rohla C, Song M, Hilaire RS, Shu S, Wells L, Webber J, Heerema RJ, Klein PE, Conner P, Wang X, Grauke LJ, Grimwood J, Schmutz J, Randall JJ. Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding. Nat Commun. 2021 07 05; 12(1):4125.
Score: 0.707
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Lovell JT, MacQueen AH, Mamidi S, Bonnette J, Jenkins J, Napier JD, Sreedasyam A, Healey A, Session A, Shu S, Barry K, Bonos S, Boston L, Daum C, Deshpande S, Ewing A, Grabowski PP, Haque T, Harrison M, Jiang J, Kudrna D, Lipzen A, Pendergast TH, Plott C, Qi P, Saski CA, Shakirov EV, Sims D, Sharma M, Sharma R, Stewart A, Singan VR, Tang Y, Thibivillier S, Webber J, Weng X, Williams M, Wu GA, Yoshinaga Y, Zane M, Zhang L, Zhang J, Behrman KD, Boe AR, Fay PA, Fritschi FB, Jastrow JD, Lloyd-Reilley J, Martínez-Reyna JM, Matamala R, Mitchell RB, Rouquette FM, Ronald P, Saha M, Tobias CM, Udvardi M, Wing RA, Wu Y, Bartley LE, Casler M, Devos KM, Lowry DB, Rokhsar DS, Grimwood J, Juenger TE, Schmutz J. Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass. Nature. 2021 02; 590(7846):438-444.
Score: 0.686
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Lötter A, Bruna T, Duong TA, Barry K, Lipzen A, Daum C, Yoshinaga Y, Grimwood J, Jenkins JW, Talag J, Borevitz J, Lovell JT, Schmutz J, Wegrzyn JL, Myburg AA. A haplotype-resolved reference genome for Eucalyptus grandis. G3 (Bethesda). 2025 Jul 09; 15(7).
Score: 0.233
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Bird KA, Brock JR, Grabowski PP, Harder AM, Healy AL, Shu S, Barry K, Boston L, Daum C, Guo J, Lipzen A, Walstead R, Grimwood J, Schmutz J, Lu C, Comai L, McKay JK, Pires JC, Edger PP, Lovell JT, Kliebenstein DJ. Allopolyploidy expanded gene content but not pangenomic variation in the hexaploid oilseed Camelina sativa. Genetics. 2025 Jan 08; 229(1):1-44.
Score: 0.225
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Espina MJC, Lovell JT, Jenkins J, Shu S, Sreedasyam A, Jordan BD, Webber J, Boston L, Bruna T, Talag J, Goodstein D, Grimwood J, Stacey G, Cannon SB, Lorenz AJ, Schmutz J, Stupar RM. Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean. Plant J. 2024 Nov; 120(3):1221-1235.
Score: 0.220
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Sreedasyam A, Lovell JT, Mamidi S, Khanal S, Jenkins JW, Plott C, Bryan KB, Li Z, Shu S, Carlson J, Goodstein D, De Santiago L, Kirkbride RC, Calleja S, Campbell T, Koebernick JC, Dever JK, Scheffler JA, Pauli D, Jenkins JN, McCarty JC, Williams M, Boston L, Webber J, Udall JA, Chen ZJ, Bourland F, Stiller WN, Saski CA, Grimwood J, Chee PW, Jones DC, Schmutz J. Genome resources for three modern cotton lines guide future breeding efforts. Nat Plants. 2024 06; 10(6):1039-1051.
Score: 0.216
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Lovell JT, Sreedasyam A, Schranz ME, Wilson M, Carlson JW, Harkess A, Emms D, Goodstein DM, Schmutz J. GENESPACE tracks regions of interest and gene copy number variation across multiple genomes. Elife. 2022 09 09; 11.
Score: 0.192
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Muchlinski A, Jia M, Tiedge K, Fell JS, Pelot KA, Chew L, Davisson D, Chen Y, Siegel J, Lovell JT, Zerbe P. Cytochrome P450-catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.). Plant J. 2021 11; 108(4):1053-1068.
Score: 0.179
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Healey AL, Shepherd M, King GJ, Butler JB, Freeman JS, Lee DJ, Potts BM, Silva-Junior OB, Baten A, Jenkins J, Shu S, Lovell JT, Sreedasyam A, Grimwood J, Furtado A, Grattapaglia D, Barry KW, Hundley H, Simmons BA, Schmutz J, Vaillancourt RE, Henry RJ. Pests, diseases, and aridity have shaped the genome of Corymbia citriodora. Commun Biol. 2021 05 10; 4(1):537.
Score: 0.175
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Mamidi S, Healey A, Huang P, Grimwood J, Jenkins J, Barry K, Sreedasyam A, Shu S, Lovell JT, Feldman M, Wu J, Yu Y, Chen C, Johnson J, Sakakibara H, Kiba T, Sakurai T, Tavares R, Nusinow DA, Baxter I, Schmutz J, Brutnell TP, Kellogg EA. A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci. Nat Biotechnol. 2020 10; 38(10):1203-1210.
Score: 0.168
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Chen ZJ, Sreedasyam A, Ando A, Song Q, De Santiago LM, Hulse-Kemp AM, Ding M, Ye W, Kirkbride RC, Jenkins J, Plott C, Lovell J, Lin YM, Vaughn R, Liu B, Simpson S, Scheffler BE, Wen L, Saski CA, Grover CE, Hu G, Conover JL, Carlson JW, Shu S, Boston LB, Williams M, Peterson DG, McGee K, Jones DC, Wendel JF, Stelly DM, Grimwood J, Schmutz J. Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement. Nat Genet. 2020 05; 52(5):525-533.
Score: 0.163
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Wang B, Mojica JP, Perera N, Lee CR, Lovell JT, Sharma A, Adam C, Lipzen A, Barry K, Rokhsar DS, Schmutz J, Mitchell-Olds T. Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta. Genome Biol. 2019 06 21; 20(1):126.
Score: 0.153
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Tanger P, Klassen S, Mojica JP, Lovell JT, Moyers BT, Baraoidan M, Naredo ME, McNally KL, Poland J, Bush DR, Leung H, Leach JE, McKay JK. Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice. Sci Rep. 2017 02 21; 7:42839.
Score: 0.131
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Lovell JT, Williamson RJ, Wright SI, McKay JK, Sharbel TF. Mutation Accumulation in an Asexual Relative of Arabidopsis. PLoS Genet. 2017 01; 13(1):e1006550.
Score: 0.129
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Lovell JT, Grogan K, Sharbel TF, McKay JK. Mating system and environmental variation drive patterns of adaptation in Boechera spatifolia (Brassicaceae). Mol Ecol. 2014 09; 23(18):4486-97.
Score: 0.110
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Lei L, Gordon SP, Liu L, Sade N, Lovell JT, Rubio Wilhelmi MDM, Singan V, Sreedasyam A, Hestrin R, Phillips J, Hernandez BT, Barry K, Shu S, Jenkins J, Schmutz J, Goodstein DM, Thilmony R, Blumwald E, Vogel JP. The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum. G3 (Bethesda). 2023 12 29; 14(1).
Score: 0.052
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Sreedasyam A, Plott C, Hossain MS, Lovell JT, Grimwood J, Jenkins JW, Daum C, Barry K, Carlson J, Shu S, Phillips J, Amirebrahimi M, Zane M, Wang M, Goodstein D, Haas FB, Hiss M, Perroud PF, Jawdy SS, Yang Y, Hu R, Johnson J, Kropat J, Gallaher SD, Lipzen A, Shakirov EV, Weng X, Torres-Jerez I, Weers B, Conde D, Pappas MR, Liu L, Muchlinski A, Jiang H, Shyu C, Huang P, Sebastian J, Laiben C, Medlin A, Carey S, Carrell AA, Chen JG, Perales M, Swaminathan K, Allona I, Grattapaglia D, Cooper EA, Tholl D, Vogel JP, Weston DJ, Yang X, Brutnell TP, Kellogg EA, Baxter I, Udvardi M, Tang Y, Mockler TC, Juenger TE, Mullet J, Rensing SA, Tuskan GA, Merchant SS, Stacey G, Schmutz J. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic Acids Res. 2023 09 08; 51(16):8383-8401.
Score: 0.051
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Devos KM, Qi P, Bahri BA, Gimode DM, Jenike K, Manthi SJ, Lule D, Lux T, Martinez-Bello L, Pendergast TH, Plott C, Saha D, Sidhu GS, Sreedasyam A, Wang X, Wang H, Wright H, Zhao J, Deshpande S, de Villiers S, Dida MM, Grimwood J, Jenkins J, Lovell J, Mayer KFX, Mneney EE, Ojulong HF, Schatz MC, Schmutz J, Song B, Tesfaye K, Odeny DA. Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet. Nat Commun. 2023 06 21; 14(1):3694.
Score: 0.051
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Tilhou NW, Poudel HP, Lovell J, Mamidi S, Schmutz J, Daum C, Zane M, Yoshinaga Y, Lipzen A, Casler MD. Genomic prediction of switchgrass winter survivorship across diverse lowland populations. G3 (Bethesda). 2023 03 09; 13(3).
Score: 0.050
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Scarlett VT, Lovell JT, Shao M, Phillips J, Shu S, Lusinska J, Goodstein DM, Jenkins J, Grimwood J, Barry K, Chalhoub B, Schmutz J, Hasterok R, Catalán P, Vogel JP. Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium. Genetics. 2023 02 09; 223(2).
Score: 0.049
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Marchant DB, Chen G, Cai S, Chen F, Schafran P, Jenkins J, Shu S, Plott C, Webber J, Lovell JT, He G, Sandor L, Williams M, Rajasekar S, Healey A, Barry K, Zhang Y, Sessa E, Dhakal RR, Wolf PG, Harkess A, Li FW, Rössner C, Becker A, Gramzow L, Xue D, Wu Y, Tong T, Wang Y, Dai F, Hua S, Wang H, Xu S, Xu F, Duan H, Theißen G, McKain MR, Li Z, McKibben MTW, Barker MS, Schmitz RJ, Stevenson DW, Zumajo-Cardona C, Ambrose BA, Leebens-Mack JH, Grimwood J, Schmutz J, Soltis PS, Soltis DE, Chen ZH. Dynamic genome evolution in a model fern. Nat Plants. 2022 09; 8(9):1038-1051.
Score: 0.048
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Choi JY, Abdulkina LR, Yin J, Chastukhina IB, Lovell JT, Agabekian IA, Young PG, Razzaque S, Shippen DE, Juenger TE, Shakirov EV, Purugganan MD. Natural variation in plant telomere length is associated with flowering time. Plant Cell. 2021 05 31; 33(4):1118-1134.
Score: 0.044
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Connection Strength
The connection strength for concepts is the sum of the scores for each matching publication.
Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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