TimothyScherrTimothy Lee Scherr40.00679120000000-105.2628183000000014452Scherr, TimothyLeeAssoc Director-FacultyFaculty Rankprns:fullNamefull nameprns:hasAuthorListauthor listprns:hasFacultyRankhas faculty rankprns:hasNetworkhas networkprns:hasPublicationVenuepublished inprns:informationResourceReferenceinformation resource referenceprns:isPrimaryPositionis primary positionprns:latitudelatitudeprns:longitudelongitudeprns:mainImagephotoprns:maxWeightmaximum weightprns:medlineTAjournal title abbreviationprns:meshDescriptorUIMeSH DescriptorUIprns:meshSemanticGroupNameMeSH semantic group nameprns:minWeightminimum weightprns:numberOfAuthorsnumber of authorsprns:numberOfConnectionsnumber of connectionsprns:numberOfPublicationsnumber of publicationsprns:personIdPerson IDprns:personInPrimaryPositionperson in primary positionprns:physicalNeighborOfphysical neighborprns:positionInDepartmentposition in departmentprns:predicateNodepredicate nodeprns:publicationDatepublication dateprns:similarTosimilar toprns:sortOrdersort orderprns:uniquenessWeightuniqueness weightprns:yearyearAcademic ArticleArticleDocumentbibo:pmidPubMed IdentifierAddressvivo:address1address line 1vivo:address2address line 2vivo:address3address line 3vivo:addressCitycityvivo:addressPostalCodepostal codevivo:addressStatestate or provincevivo:authorInAuthorshipselected publicationsvivo:authorRankauthor rank in publicationAuthorshipDepartmentvivo:hasResearchArearesearch areasvivo:hrJobTitleHR job titleInformation Resourcevivo:linkedAuthorlinked authorvivo:linkedInformationResourcelinked information resourcevivo:mailingAddressmailing addressvivo:middleNamemiddle name or initialvivo:orcidIdORCID idvivo:personInPositionpositionsPositionvivo:positionInOrganizationposition in organizationvivo:preferredTitlepreferred titlerdf:predicatepredicaterdf:typetyperdfs:labellabelConceptAgentfoaf:firstNamefirst namefoaf:lastNamelast nameOrganizationPersonJeffreyKnutsenJeffrey Steven Knutsen40.00679120000000-105.2628183000000010032Knutsen, JeffreyFaculty Fellow5Other Faculty1Professor3Asst Professor7Fellow or Post DocFuyongXingFuyong Xing39.74528180000000-104.8375727000000013349Xing, FuyongAsst ProfessorD012984Activities & BehaviorsConcepts & IdeasObjectsOccupations3326310.698202Software1111Engineering Drive1ECADEngineering Admin Wing1111Engineering DriveBoulder80309-0001CO1.208350.01814147research areas20.21831.1370760similar to1110selected publicationsD008853Procedures871320.886998MicroscopyD000465Concepts & Ideas77615930.563941AlgorithmsD058948Procedures14180.974192Cell TrackingD007091Activities & Behaviors2967390.705494Image Processing, Computer-AssistedGregoryRiekerGregory Brian Rieker40.00679120000000-105.2628183000000015734Rieker, GregoryFaculty FellowSOM-OP General OperationsCSPH-Bio Info General OpsCognitive Sci Institute-AdminCollege Engineering & App SciUniversity of Colorado BoulderUniversity of Colorado Denver - Anschutz Medical CampusPeterHamlingtonPeter Edward Hamlington40.00679120000000-105.262818300000004106Hamlington, PeterFaculty FellowTorWagerTor Dessart Wager40.00869130000000-105.268983300000003473Wager, TorAffiliateAuthorship 210446431671462Bartschat A, Allgeier S, Bohn S, Scherr T, Blessing D, Reichert KM, Reischl M, Stachs O, Koehler B, Mikut RKlinische Monatsblatter fur AugenheilkundeBartschat A, Allgeier S, Bohn S, Scherr T, Blessing D, Reichert KM, Reischl M, Stachs O, Koehler B, Mikut R. [Digital Image Processing and Deep Neural Networks in Ophthalmology - Current Trends]. Klin Monbl Augenheilkd. 2019 Dec; 236(12):1399-1406.Klin Monbl Augenheilkd2019-10-31T00:00:002019[Digital Image Processing and Deep Neural Networks in Ophthalmology - Current Trends].Authorship 217456332142187Sheshachala S, Gr?sche M, Scherr T, Hu Y, Sun P, Bartschat A, Mikut R, Niemeyer CMChemphyschem : a European journal of chemical physics and physical chemistrySheshachala S, Gr?sche M, Scherr T, Hu Y, Sun P, Bartschat A, Mikut R, Niemeyer CM. Segregation of Dispersed Silica Nanoparticles in Microfluidic Water-in-Oil Droplets: A Kinetic Study. Chemphyschem. 2020 05 18; 21(10):1070-1078.Chemphyschem2020-04-09T00:00:002020Segregation of Dispersed Silica Nanoparticles in Microfluidic Water-in-Oil Droplets: A Kinetic Study.Authorship 222046932555736Takamiya M, Stegmaier J, Kobitski AY, Schott B, Weger BD, Margariti D, Cereceda Delgado AR, Gourain V, Scherr T, Yang L, Sorge S, Otte JC, Hartmann V, van Wezel J, Stotzka R, Reinhard T, Schlunck G, Dickmeis T, Rastegar S, Mikut R, Nienhaus GU, Str?hle UPLoS geneticsTakamiya M, Stegmaier J, Kobitski AY, Schott B, Weger BD, Margariti D, Cereceda Delgado AR, Gourain V, Scherr T, Yang L, Sorge S, Otte JC, Hartmann V, van Wezel J, Stotzka R, Reinhard T, Schlunck G, Dickmeis T, Rastegar S, Mikut R, Nienhaus GU, Str?hle U. Pax6 organizes the anterior eye segment by guiding two distinct neural crest waves. PLoS Genet. 2020 06; 16(6):e1008774.PLoS Genet2020-06-17T00:00:002020Pax6 organizes the anterior eye segment by guiding two distinct neural crest waves.Authorship 222280132589734Scherr T, Streule K, Bartschat A, B?hland M, Stegmaier J, Reischl M, Orian-Rousseau V, Mikut RBioinformatics (Oxford, England)Scherr T, Streule K, Bartschat A, B?hland M, Stegmaier J, Reischl M, Orian-Rousseau V, Mikut R. BeadNet: deep learning-based bead detection and counting in low-resolution microscopy images. Bioinformatics. 2020 11 01; 36(17):4668-4670.Bioinformatics2020-11-01T00:00:002020BeadNet: deep learning-based bead detection and counting in low-resolution microscopy images.Authorship 231607133290432Scherr T, L?ffler K, B?hland M, Mikut RPloS oneScherr T, L?ffler K, B?hland M, Mikut R. Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy. PLoS One. 2020; 15(12):e0243219.PLoS One2020-12-08T00:00:002020Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy.CaseyGreeneCasey Stephen Greene17804Greene, Casey0000-0001-8713-9213ProfessorAuthorship 2491112Authorship 249775334492015L?ffler K, Scherr T, Mikut RPloS oneL?ffler K, Scherr T, Mikut R. A graph-based cell tracking algorithm with few manually tunable parameters and automated segmentation error correction. PLoS One. 2021; 16(9):e0249257.PLoS One2021-09-07T00:00:002021A graph-based cell tracking algorithm with few manually tunable parameters and automated segmentation error correction.34550999B?hland M, Tharun L, Scherr T, Mikut R, Hagenmeyer V, Thompson LDR, Perner S, Reischl MPloS oneB?hland M, Tharun L, Scherr T, Mikut R, Hagenmeyer V, Thompson LDR, Perner S, Reischl M. Machine learning methods for automated classification of tumors with papillary thyroid carcinoma-like nuclei: A quantitative analysis. PLoS One. 2021; 16(9):e0257635.PLoS One2021-09-22T00:00:002021Machine learning methods for automated classification of tumors with papillary thyroid carcinoma-like nuclei: A quantitative analysis.JayashreeKalpathy-CramerJayashree A Kalpathy-Cramer26561Kalpathy-Cramer, JayashreeProfessorSOM-BIOMED Informatics Gen OpsAuthorship 270781136445903Scherr T, Seiffarth J, Wollenhaupt B, Neumann O, Schilling MP, Kohlheyer D, Scharr H, N?h K, Mikut RPloS oneScherr T, Seiffarth J, Wollenhaupt B, Neumann O, Schilling MP, Kohlheyer D, Scharr H, N?h K, Mikut R. microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation. PLoS One. 2022; 17(11):e0277601.PLoS One2022-11-29T00:00:002022microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation.Authorship 282676937202537Ma?ka M, Ulman V, Delgado-Rodriguez P, G?mez-de-Mariscal E, Necasov? T, Guerrero Pe?a FA, Ren TI, Meyerowitz EM, Scherr T, L?ffler K, Mikut R, Guo T, Wang Y, Allebach JP, Bao R, Al-Shakarji NM, Rahmon G, Toubal IE, Palaniappan K, Lux F, Matula P, Sugawara K, Magnusson KEG, Aho L, Cohen AR, Arbelle A, Ben-Haim T, Raviv TR, Isensee F, J?ger PF, Maier-Hein KH, Zhu Y, Ederra C, Urbiola A, Meijering E, Cunha A, Mu?oz-Barrutia A, Kozubek M, Ortiz-de-Sol?rzano CNature methodsMa?ka M, Ulman V, Delgado-Rodriguez P, G?mez-de-Mariscal E, Necasov? T, Guerrero Pe?a FA, Ren TI, Meyerowitz EM, Scherr T, L?ffler K, Mikut R, Guo T, Wang Y, Allebach JP, Bao R, Al-Shakarji NM, Rahmon G, Toubal IE, Palaniappan K, Lux F, Matula P, Sugawara K, Magnusson KEG, Aho L, Cohen AR, Arbelle A, Ben-Haim T, Raviv TR, Isensee F, J?ger PF, Maier-Hein KH, Zhu Y, Ederra C, Urbiola A, Meijering E, Cunha A, Mu?oz-Barrutia A, Kozubek M, Ortiz-de-Sol?rzano C. The Cell Tracking Challenge: 10?years of objective benchmarking. Nat Methods. 2023 07; 20(7):1010-1020.Nat Methods2023-05-18T00:00:002023The Cell Tracking Challenge: 10?years of objective benchmarking.Authorship 2976842638157647Graham S, Vu QD, Jahanifar M, Weigert M, Schmidt U, Zhang W, Zhang J, Yang S, Xiang J, Wang X, Rumberger JL, Baumann E, Hirsch P, Liu L, Hong C, Aviles-Rivero AI, Jain A, Ahn H, Hong Y, Azzuni H, Xu M, Yaqub M, Blache MC, Pi?gu B, Vernay B, Scherr T, B?hland M, L?ffler K, Li J, Ying W, Wang C, Snead D, Raza SEA, Minhas F, Rajpoot NMMedical image analysisGraham S, Vu QD, Jahanifar M, Weigert M, Schmidt U, Zhang W, Zhang J, Yang S, Xiang J, Wang X, Rumberger JL, Baumann E, Hirsch P, Liu L, Hong C, Aviles-Rivero AI, Jain A, Ahn H, Hong Y, Azzuni H, Xu M, Yaqub M, Blache MC, Pi?gu B, Vernay B, Scherr T, B?hland M, L?ffler K, Li J, Ying W, Wang C, Snead D, Raza SEA, Minhas F, Rajpoot NM. CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. Med Image Anal. 2024 Feb; 92:103047.Med Image Anal2023-12-13T00:00:002023CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting.true1Director-FacultyDirector-Facultytrue1Assoc Director-FacultyAssoc Director-Facultytrue1Endowed or Named ProfessorEndowed or Named Professortrue1ProfessorProfessortrue1Faculty FellowFaculty Fellowtrue1Faculty FellowFaculty Fellowtrue1ProfessorProfessortrue1AffiliateAffiliatetrue1Asst ProfessorAsst Professortrue1Faculty FellowFaculty Fellowtrue1ProfessorProfessorRobertMcLeodRobert R McLeod40.00679120000000-105.262818300000008773McLeod, RobertEndowed or Named ProfessorDebashisGhoshDebashis Ghosh39.74528180000000-104.837572700000008898Ghosh, DebashisProfessorMichaelWalkerMichael Edward Walker40.00679120000000-105.262818300000009108Walker, MichaelDirector-Faculty