 Timothy Lee Scherr
| Title | Assoc Director-Faculty |
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| Institution | University of Colorado Boulder |
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| Department | College Engineering & App Sci |
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 Bibliographic
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Graham S, Vu QD, Jahanifar M, Weigert M, Schmidt U, Zhang W, Zhang J, Yang S, Xiang J, Wang X, Rumberger JL, Baumann E, Hirsch P, Liu L, Hong C, Aviles-Rivero AI, Jain A, Ahn H, Hong Y, Azzuni H, Xu M, Yaqub M, Blache MC, Pi?gu B, Vernay B, Scherr T, B?hland M, L?ffler K, Li J, Ying W, Wang C, Snead D, Raza SEA, Minhas F, Rajpoot NM. CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. Med Image Anal. 2024 Feb; 92:103047. PMID: 38157647.
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Ma?ka M, Ulman V, Delgado-Rodriguez P, G?mez-de-Mariscal E, Necasov? T, Guerrero Pe?a FA, Ren TI, Meyerowitz EM, Scherr T, L?ffler K, Mikut R, Guo T, Wang Y, Allebach JP, Bao R, Al-Shakarji NM, Rahmon G, Toubal IE, Palaniappan K, Lux F, Matula P, Sugawara K, Magnusson KEG, Aho L, Cohen AR, Arbelle A, Ben-Haim T, Raviv TR, Isensee F, J?ger PF, Maier-Hein KH, Zhu Y, Ederra C, Urbiola A, Meijering E, Cunha A, Mu?oz-Barrutia A, Kozubek M, Ortiz-de-Sol?rzano C. The Cell Tracking Challenge: 10?years of objective benchmarking. Nat Methods. 2023 07; 20(7):1010-1020. PMID: 37202537.
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Scherr T, Seiffarth J, Wollenhaupt B, Neumann O, Schilling MP, Kohlheyer D, Scharr H, N?h K, Mikut R. microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation. PLoS One. 2022; 17(11):e0277601. PMID: 36445903.
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B?hland M, Tharun L, Scherr T, Mikut R, Hagenmeyer V, Thompson LDR, Perner S, Reischl M. Machine learning methods for automated classification of tumors with papillary thyroid carcinoma-like nuclei: A quantitative analysis. PLoS One. 2021; 16(9):e0257635. PMID: 34550999.
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L?ffler K, Scherr T, Mikut R. A graph-based cell tracking algorithm with few manually tunable parameters and automated segmentation error correction. PLoS One. 2021; 16(9):e0249257. PMID: 34492015.
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Scherr T, L?ffler K, B?hland M, Mikut R. Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy. PLoS One. 2020; 15(12):e0243219. PMID: 33290432.
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Scherr T, Streule K, Bartschat A, B?hland M, Stegmaier J, Reischl M, Orian-Rousseau V, Mikut R. BeadNet: deep learning-based bead detection and counting in low-resolution microscopy images. Bioinformatics. 2020 11 01; 36(17):4668-4670. PMID: 32589734.
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Takamiya M, Stegmaier J, Kobitski AY, Schott B, Weger BD, Margariti D, Cereceda Delgado AR, Gourain V, Scherr T, Yang L, Sorge S, Otte JC, Hartmann V, van Wezel J, Stotzka R, Reinhard T, Schlunck G, Dickmeis T, Rastegar S, Mikut R, Nienhaus GU, Str?hle U. Pax6 organizes the anterior eye segment by guiding two distinct neural crest waves. PLoS Genet. 2020 06; 16(6):e1008774. PMID: 32555736.
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Sheshachala S, Gr?sche M, Scherr T, Hu Y, Sun P, Bartschat A, Mikut R, Niemeyer CM. Segregation of Dispersed Silica Nanoparticles in Microfluidic Water-in-Oil Droplets: A Kinetic Study. Chemphyschem. 2020 05 18; 21(10):1070-1078. PMID: 32142187.
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Bartschat A, Allgeier S, Bohn S, Scherr T, Blessing D, Reichert KM, Reischl M, Stachs O, Koehler B, Mikut R. [Digital Image Processing and Deep Neural Networks in Ophthalmology - Current Trends]. Klin Monbl Augenheilkd. 2019 Dec; 236(12):1399-1406. PMID: 31671462.
This graph shows the total number of publications by year, by first, middle/unknown, or last author.
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| Year | Publications |
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| 2019 | 1 | | 2020 | 4 | | 2021 | 2 | | 2022 | 1 | | 2023 | 2 |
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