 Connection
Srinivas Ramachandran to Humans
This is a "connection" page, showing publications Srinivas Ramachandran has written about Humans.
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Connection Strength |
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0.339 |
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Trouth A, Ravichandran K, Gafken PR, Martire S, Boyle GE, Veronezi GMB, La V, Namciu SJ, Banaszynski LA, Sarthy JF, Ramachandran S. The length of the G1 phase is an essential determinant of H3K27me3 landscapes across diverse cell types. PLoS Biol. 2025 Apr; 23(4):e3003119.
Score: 0.022
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Kumar R, Seth S, Bhargav A, Saini N, Ramachandran S. Computational identification of perturbed pathways in type 2 diabetes mellitus patients reveals necroptosis and NF-?B pathways with potential for susceptibility to psoriasis. J Biosci. 2025; 50.
Score: 0.022
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Trouth A, Veronezi GMB, Ramachandran S. The impact of cell states on heterochromatin dynamics. Biochem J. 2024 11 06; 481(21):1519-1533.
Score: 0.021
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Bhargav A, Gupta S, Seth S, James S, Fatima F, Chaurasia P, Ramachandran S. Knowledgebase of potential multifaceted solutions to antimicrobial resistance. Comput Biol Chem. 2022 Dec; 101:107772.
Score: 0.019
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Rao S, Han AL, Zukowski A, Kopin E, Sartorius CA, Kabos P, Ramachandran S. Transcription factor-nucleosome dynamics from plasma cfDNA identifies ER-driven states in breast cancer. Sci Adv. 2022 08 26; 8(34):eabm4358.
Score: 0.018
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Zukowski A, Rao S, Ramachandran S. Phenotypes from cell-free DNA. Open Biol. 2020 09; 10(9):200119.
Score: 0.016
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Ramachandran S, Ahmad K, Henikoff S. Capitalizing on disaster: Establishing chromatin specificity behind the replication fork. Bioessays. 2017 04; 39(4).
Score: 0.013
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Chaudhuri R, Ramachandran S. Immunoinformatics as a Tool for New Antifungal Vaccines. Methods Mol Biol. 2017; 1625:31-43.
Score: 0.012
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Ramachandran S, Henikoff S. Nucleosome dynamics during chromatin remodeling in vivo. Nucleus. 2016; 7(1):20-6.
Score: 0.012
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Rani J, Shah AB, Ramachandran S. pubmed.mineR: an R package with text-mining algorithms to analyse PubMed abstracts. J Biosci. 2015 Oct; 40(4):671-82.
Score: 0.011
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Chaudhuri R, Ramachandran S. Prediction of virulence factors using bioinformatics approaches. Methods Mol Biol. 2014; 1184:389-400.
Score: 0.010
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Puniya BL, Kulshreshtha D, Verma SP, Kumar S, Ramachandran S. Integrated gene co-expression network analysis in the growth phase of Mycobacterium tuberculosis reveals new potential drug targets. Mol Biosyst. 2013 Nov; 9(11):2798-815.
Score: 0.010
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Chaudhuri R, Ansari FA, Raghunandanan MV, Ramachandran S. FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens. BMC Genomics. 2011 Apr 15; 12:192.
Score: 0.008
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Chaudhuri R, Ahmed S, Ansari FA, Singh HV, Ramachandran S. MalVac: database of malarial vaccine candidates. Malar J. 2008 Sep 23; 7:184.
Score: 0.007
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Sharma VK, Kumar N, Brahmachari SK, Ramachandran S. Abundance of dinucleotide repeats and gene expression are inversely correlated: a role for gene function in addition to intron length. Physiol Genomics. 2007 Sep 19; 31(1):96-103.
Score: 0.006
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Sharma VK, Sharma A, Kumar N, Khandelwal M, Mandapati KK, Horn-Saban S, Strichman-Almashanu L, Lancet D, Brahmachari SK, Ramachandran S. Expoldb: expression linked polymorphism database with inbuilt tools for analysis of expression and simple repeats. BMC Genomics. 2006 Oct 13; 7:258.
Score: 0.006
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Evangelista JE, Clarke DJB, Byrd AI, Srinivasan S, Srinivasan S, Maurya MR, Jenkins SL, Diamant I, Sanchez E, Xie Z, Olaiya S, Kim H, Marino GB, Ahmed N, Ramachandran S, Subramaniam S, Ma'ayan A. The CFDE Workbench: Integrating Metadata and Processed Data from Common Fund Programs. J Mol Biol. 2026 Sep 15; 438(18):169631.
Score: 0.006
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Sharma VK, Brahmachari SK, Ramachandran S. (TG/CA)n repeats in human gene families: abundance and selective patterns of distribution according to function and gene length. BMC Genomics. 2005 Jun 03; 6:83.
Score: 0.006
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Han AL, Vinod Paul K, Rao S, Brechbuhl HM, Sartorius CA, Ramachandran S, Kabos P. Estradiol (E2) concentration shapes the chromatin binding landscape of estrogen receptor alpha. J Biol Chem. 2025 07; 301(7):108499.
Score: 0.006
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Clarke DJB, Evangelista JE, Xie Z, Marino GB, Byrd AI, Maurya MR, Srinivasan S, Yu K, Petrosyan V, Roth ME, Milinkov M, King CH, Vora JK, Keeney J, Nemarich C, Khan W, Lachmann A, Ahmed N, Agris A, Pan J, Ramachandran S, Fahy E, Esquivel E, Mihajlovic A, Jevtic B, Milinovic V, Kim S, McNeely P, Wang T, Wenger E, Brown MA, Sickler A, Zhu Y, Jenkins SL, Blood PD, Taylor DM, Resnick AC, Mazumder R, Milosavljevic A, Subramaniam S, Ma'ayan A. Playbook workflow builder: Interactive construction of bioinformatics workflows. PLoS Comput Biol. 2025 Apr; 21(4):e1012901.
Score: 0.006
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Thakran S, Guin D, Singh P, Uppili B, Ramachandran S, Kushwaha SS, Kukreti R. Genome-Wide Association Study Reveals Genetic Architecture of Common Epilepsies. Clin Genet. 2025 07; 108(1):22-32.
Score: 0.005
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Valdes P, Caldwell AB, Liu Q, Fitzgerald MQ, Ramachandran S, Karch CM, Galasko DR, Yuan SH, Wagner SL, Subramaniam S. Integrative multiomics reveals common endotypes across PSEN1, PSEN2, and APP mutations in familial Alzheimer's disease. Alzheimers Res Ther. 2025 01 04; 17(1):5.
Score: 0.005
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Sachdeva G, Kumar K, Jain P, Ramachandran S. SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks. Bioinformatics. 2005 Feb 15; 21(4):483-91.
Score: 0.005
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Valdes P, Henry KW, Fitzgerald MQ, Muralidharan K, Caldwell AB, Ramachandran S, Goldstein LSB, Mobley WC, Galasko DR, Subramaniam S. Limitations of the human iPSC-derived neuron model for early-onset Alzheimer's disease. Mol Brain. 2023 11 03; 16(1):75.
Score: 0.005
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Sharma VK, B-Rao C, Sharma A, Brahmachari SK, Ramachandran S. (TG:CA)(n) repeats in human housekeeping genes. J Biomol Struct Dyn. 2003 Oct; 21(2):303-10.
Score: 0.005
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Caldwell AB, Anantharaman BG, Ramachandran S, Nguyen P, Liu Q, Trinh I, Galasko DR, Desplats PA, Wagner SL, Subramaniam S. Transcriptomic profiling of sporadic Alzheimer's disease patients. Mol Brain. 2022 10 12; 15(1):83.
Score: 0.005
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Azad P, Caldwell AB, Ramachandran S, Spann NJ, Akbari A, Villafuerte FC, Bermudez D, Zhao H, Poulsen O, Zhou D, Bafna V, Subramaniam S, Haddad GG. ARID1B, a molecular suppressor of erythropoiesis, is essential for the prevention of Monge's disease. Exp Mol Med. 2022 06; 54(6):777-787.
Score: 0.005
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Nandi T, B-Rao C, Ramachandran S. Comparative genomics using data mining tools. J Biosci. 2002 Feb; 27(1 Suppl 1):15-25.
Score: 0.004
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Rani J, Bhargav A, Khan FI, Ramachandran S, Lai D, Bajpai U. In silico prediction of natural compounds as potential multi-target inhibitors of structural proteins of SARS-CoV-2. J Biomol Struct Dyn. 2022; 40(22):12118-12134.
Score: 0.004
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Vatsyayan A, Sharma P, Gupta S, Sandhu S, Venu SL, Sharma V, Badaoui B, Azedine K, Youssef S, Rajab A, Fayez A, Madinur S, Ranawat A, Pandhare K, Ramachandran S, Sivasubbu S, Scaria V. DALIA- a comprehensive resource of Disease Alleles in Arab population. PLoS One. 2021; 16(1):e0244567.
Score: 0.004
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Thakran S, Guin D, Singh P, Singh P, Kukal S, Rawat C, Yadav S, Kushwaha SS, Srivastava AK, Hasija Y, Saso L, Ramachandran S, Kukreti R. Genetic Landscape of Common Epilepsies: Advancing towards Precision in Treatment. Int J Mol Sci. 2020 Oct 21; 21(20).
Score: 0.004
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Liu H, Ramachandran S, Fong N, Phang T, Lee S, Parsa P, Liu X, Harmacek L, Danhorn T, Song T, Oh S, Zhang Q, Chen Z, Zhang Q, Tu TH, Happoldt C, O'Conner B, Janknecht R, Li CY, Marrack P, Kappler J, Leach S, Zhang G. JMJD5 couples with CDK9 to release the paused RNA polymerase II. Proc Natl Acad Sci U S A. 2020 08 18; 117(33):19888-19895.
Score: 0.004
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Ban DK, Liu Y, Wang Z, Ramachandran S, Sarkar N, Shi Z, Liu W, Karkisaval AG, Martinez-Loran E, Zhang F, Glinsky G, Bandaru PR, Fan C, Lal R. Direct DNA Methylation Profiling with an Electric Biosensor. ACS Nano. 2020 06 23; 14(6):6743-6751.
Score: 0.004
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Eniyan K, Rani J, Ramachandran S, Bhat R, Khan IA, Bajpai U. Screening of Antitubercular Compound Library Identifies Inhibitors of Mur Enzymes in Mycobacterium tuberculosis. SLAS Discov. 2020 01; 25(1):70-78.
Score: 0.004
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Guo J, Ramachandran S, Zhong R, Lal R, Zhang F. Generating Cyan Fluorescence with De Novo Tripeptides: An In Vitro Mutation Study on the Role of Single Amino Acid Residues and Their Sequence. Chembiochem. 2019 09 16; 20(18):2324-2330.
Score: 0.004
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Rani J, Silla Y, Borah K, Ramachandran S, Bajpai U. Repurposing of FDA-approved drugs to target MurB and MurE enzymes in Mycobacterium tuberculosis. J Biomol Struct Dyn. 2020 Jun; 38(9):2521-2532.
Score: 0.004
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Alemasov NA, Ivanisenko NV, Taneja B, Taneja V, Ramachandran S, Ivanisenko VA. Improved regression model to predict an impact of SOD1 mutations on ALS patients survival time based on analysis of hydrogen bond stability. J Mol Graph Model. 2019 01; 86:247-255.
Score: 0.004
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Alemasov NA, Ivanisenko NV, Ramachandran S, Ivanisenko VA. Molecular mechanisms underlying the impact of mutations in SOD1 on its conformational properties associated with amyotrophic lateral sclerosis as revealed with molecular modelling. BMC Struct Biol. 2018 02 05; 18(Suppl 1):1.
Score: 0.003
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Feinstein HE, Benbow SJ, LaPointe NE, Patel N, Ramachandran S, Do TD, Gaylord MR, Huskey NE, Dressler N, Korff M, Quon B, Cantrell KL, Bowers MT, Lal R, Feinstein SC. Oligomerization of the microtubule-associated protein tau is mediated by its N-terminal sequences: implications for normal and pathological tau action. J Neurochem. 2016 06; 137(6):939-54.
Score: 0.003
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Ahirwar R, Nahar S, Aggarwal S, Ramachandran S, Maiti S, Nahar P. In silico selection of an aptamer to estrogen receptor alpha using computational docking employing estrogen response elements as aptamer-alike molecules. Sci Rep. 2016 Feb 22; 6:21285.
Score: 0.003
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Jang H, Arce FT, Lee J, Gillman AL, Ramachandran S, Kagan BL, Lal R, Nussinov R. Computational Methods for Structural and Functional Studies of Alzheimer's Amyloid Ion Channels. Methods Mol Biol. 2016; 1345:251-68.
Score: 0.003
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Vats A, Gourie-Devi M, Verma M, Ramachandran S, Taneja B, Kukreti R, Taneja V. Identification of L84F mutation with a novel nucleotide change c.255G?>?T in the superoxide dismutase gene in a North Indian family with amyotrophic lateral sclerosis. Amyotroph Lateral Scler Frontotemporal Degener. 2016; 17(3-4):253-9.
Score: 0.003
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Latka C, Dey SS, Mahajan S, Prabu R, Jangir PK, Gupta C, Das S, Ramachandran VG, Bhattacharya SN, Pandey R, Sharma R, Ramachandran S, Taneja B. Genome sequence of a clinical isolate of dermatophyte, Trichophyton rubrum from India. FEMS Microbiol Lett. 2015 Apr; 362(8):fnv039.
Score: 0.003
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Jang H, Arce FT, Ramachandran S, Kagan BL, Lal R, Nussinov R. Familial Alzheimer's disease Osaka mutant (?E22) ß-barrels suggest an explanation for the different Aß1-40/42 preferred conformational states observed by experiment. J Phys Chem B. 2013 Oct 03; 117(39):11518-29.
Score: 0.002
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Jang H, Connelly L, Arce FT, Ramachandran S, Lal R, Kagan BL, Nussinov R. Alzheimer's disease: which type of amyloid-preventing drug agents to employ? Phys Chem Chem Phys. 2013 Jun 21; 15(23):8868-77.
Score: 0.002
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Jang H, Arce FT, Ramachandran S, Capone R, Azimova R, Kagan BL, Nussinov R, Lal R. Truncated beta-amyloid peptide channels provide an alternative mechanism for Alzheimer's Disease and Down syndrome. Proc Natl Acad Sci U S A. 2010 Apr 06; 107(14):6538-43.
Score: 0.002
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Sharma A, Sharma VK, Horn-Saban S, Lancet D, Ramachandran S, Brahmachari SK. Assessing natural variations in gene expression in humans by comparing with monozygotic twins using microarrays. Physiol Genomics. 2005 Mar 21; 21(1):117-23.
Score: 0.001
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Ravi V, Ramachandran S, Thompson RW, Andersen JF, Neva FA. Characterization of a recombinant immunodiagnostic antigen (NIE) from Strongyloides stercoralis L3-stage larvae. Mol Biochem Parasitol. 2002 Nov-Dec; 125(1-2):73-81.
Score: 0.001
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Connection Strength
The connection strength for concepts is the sum of the scores for each matching publication.
Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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