BreckDuerkopBreck A. Duerkop39.74545800000000-104.8393691000000012304Duerkop, BreckA.303/724-8670Associate Professorprns:coAuthorOfcoauthor ofprns:endDateend dateFaculty Rankprns:fullNamefull nameprns:grantAwardedBygrant awarded byprns:hasAuthorListauthor listprns:hasFacultyRankhas faculty rankprns:hasNetworkhas networkprns:hasPublicationVenuepublished inprns:informationResourceReferenceinformation resource referenceprns:isPrimaryPositionis primary positionprns:latitudelatitudeprns:longitudelongitudeprns:mainImagephotoprns:maxWeightmaximum weightprns:medlineTAjournal title abbreviationprns:meshDescriptorUIMeSH DescriptorUIprns:meshSemanticGroupNameMeSH semantic group nameprns:minWeightminimum weightprns:numberOfAuthorsnumber of authorsprns:numberOfConnectionsnumber of connectionsprns:numberOfPublicationsnumber of publicationsprns:personIdPerson IDprns:personInPrimaryPositionperson in primary positionprns:physicalNeighborOfphysical neighborprns:positionInDepartmentposition in departmentprns:positionInDivisionposition in divisionprns:predicateNodepredicate nodeprns:principalInvestigatorNameprincipal investigator nameprns:publicationDatepublication dateprns:similarTosimilar toprns:sortOrdersort orderprns:startDatestart dateprns:uniquenessWeightuniqueness weightprns:yearyearAcademic ArticleArticleDocumentbibo:pmidPubMed IdentifierAddressvivo:address1address line 1vivo:address2address line 2vivo:address3address line 3vivo:addressCitycityvivo:addressPostalCodepostal codevivo:addressStatestate or provinceAgreementvivo:authorInAuthorshipselected publicationsvivo:authorRankauthor rank in publicationAuthorshipDepartmentDivisionGrantvivo:hasResearchArearesearch areasvivo:hasResearcherRoleresearch activitiesvivo:hrJobTitleHR job titleInformation Resourcevivo:linkedAuthorlinked authorvivo:linkedInformationResourcelinked information resourcevivo:mailingAddressmailing addressvivo:middleNamemiddle name or initialvivo:personInPositionpositionsvivo:phoneNumberphonePositionvivo:positionInOrganizationposition in organizationvivo:preferredTitlepreferred titleResearcher Rolevivo:researcherRoleOfresearcher role ofRolevivo:roleContributesTocontributes tovivo:sponsorAwardIdsponsor award idrdf:predicatepredicaterdf:typetyperdfs:labellabelConceptAgentfoaf:firstNamefirst namefoaf:lastNamelast nameOrganizationPersonJaredKlarquistJared S Klarquist39.74545800000000-104.8393691000000011772Klarquist, JaredAsst Professor-ResearchJamesColbertJames F. Colbert39.74528180000000-104.8375727000000011872Colbert, JamesAsst Professor12800 E 19th Ave2RC1NResearch North Tower12800 E 19th AveAurora80045-2537CO9.921320.0108287181research areas0.4644420.11611115coauthor of42.66496.7125760similar to1147selected publicationsAuthorship 1538511Authorship 1538553Authorship 1538775Authorship 1539102Authorship 1540061Authorship 1540843Authorship 1543871Authorship 1544111Authorship 1548151Authorship 1548521Authorship 154923223778792Duerkop BA, Hooper LVNature immunologyDuerkop BA, Hooper LV. Resident viruses and their interactions with the immune system. Nat Immunol. 2013 Jul; 14(7):654-9.Nat Immunol2013-07-01T00:00:002013Resident viruses and their interactions with the immune system.20095633Seyedsayamdost MR, Chandler JR, Blodgett JA, Lima PS, Duerkop BA, Oinuma K, Greenberg EP, Clardy JOrganic lettersSeyedsayamdost MR, Chandler JR, Blodgett JA, Lima PS, Duerkop BA, Oinuma K, Greenberg EP, Clardy J. Quorum-sensing-regulated bactobolin production by Burkholderia thailandensis E264. Org Lett. 2010 Feb 19; 12(4):716-9.Org Lett2010-02-19T00:00:002010Quorum-sensing-regulated bactobolin production by Burkholderia thailandensis E264.17075036M?h U, Hare BJ, Duerkop BA, Schuster M, Hanzelka BL, Heim R, Olson ER, Greenberg EPProceedings of the National Academy of Sciences of the United States of AmericaM?h U, Hare BJ, Duerkop BA, Schuster M, Hanzelka BL, Heim R, Olson ER, Greenberg EP. A structurally unrelated mimic of a Pseudomonas aeruginosa acyl-homoserine lactone quorum-sensing signal. Proc Natl Acad Sci U S A. 2006 Nov 07; 103(45):16948-52.Proc Natl Acad Sci U S A2006-10-30T00:00:002006A structurally unrelated mimic of a Pseudomonas aeruginosa acyl-homoserine lactone quorum-sensing signal.17118986Chang HK, Thalhofer C, Duerkop BA, Mehling JS, Verma S, Gollob KJ, Almeida R, Wilson MEInfection and immunityChang HK, Thalhofer C, Duerkop BA, Mehling JS, Verma S, Gollob KJ, Almeida R, Wilson ME. Oxidant generation by single infected monocytes after short-term fluorescence labeling of a protozoan parasite. Infect Immun. 2007 Feb; 75(2):1017-24.Infect Immun2006-11-21T00:00:002006Oxidant generation by single infected monocytes after short-term fluorescence labeling of a protozoan parasite.23045666Duerkop BA, Clements CV, Rollins D, Rodrigues JL, Hooper LVProceedings of the National Academy of Sciences of the United States of AmericaDuerkop BA, Clements CV, Rollins D, Rodrigues JL, Hooper LV. A composite bacteriophage alters colonization by an intestinal commensal bacterium. Proc Natl Acad Sci U S A. 2012 Oct 23; 109(43):17621-6.Proc Natl Acad Sci U S A2012-10-08T00:00:002012A composite bacteriophage alters colonization by an intestinal commensal bacterium.22236075McClean AE, Duerkop BA, Greenberg EP, Kluepfel DAPhytopathologyMcClean AE, Duerkop BA, Greenberg EP, Kluepfel DA. AHL signals induce rubrifacine production in a bruI mutant of Brenneria rubrifaciens. Phytopathology. 2012 Feb; 102(2):195-203.Phytopathology2012-02-01T00:00:002012AHL signals induce rubrifacine production in a bruI mutant of Brenneria rubrifaciens.17496085Duerkop BA, Ulrich RL, Greenberg EPJournal of bacteriologyDuerkop BA, Ulrich RL, Greenberg EP. Octanoyl-homoserine lactone is the cognate signal for Burkholderia mallei BmaR1-BmaI1 quorum sensing. J Bacteriol. 2007 Jul; 189(14):5034-40.J Bacteriol2007-05-11T00:00:002007Octanoyl-homoserine lactone is the cognate signal for Burkholderia mallei BmaR1-BmaI1 quorum sensing.19766080Duerkop BA, Vaishnava S, Hooper LVImmunityDuerkop BA, Vaishnava S, Hooper LV. Immune responses to the microbiota at the intestinal mucosal surface. Immunity. 2009 Sep 18; 31(3):368-76.Immunity2009-09-18T00:00:002009Immune responses to the microbiota at the intestinal mucosal surface.1Professor3Asst Professor2Assoc Professor7Fellow or Post DocAuthorship 1576203Authorship 1578813Authorship 159223128182951Hughes ER, Winter MG, Duerkop BA, Spiga L, Furtado de Carvalho T, Zhu W, Gillis CC, B?ttner L, Smoot MP, Behrendt CL, Cherry S, Santos RL, Hooper LV, Winter SECell host & microbeHughes ER, Winter MG, Duerkop BA, Spiga L, Furtado de Carvalho T, Zhu W, Gillis CC, B?ttner L, Smoot MP, Behrendt CL, Cherry S, Santos RL, Hooper LV, Winter SE. Microbial Respiration and Formate Oxidation as Metabolic Signatures of Inflammation-Associated Dysbiosis. Cell Host Microbe. 2017 Feb 08; 21(2):208-219.Cell Host Microbe2017-02-08T00:00:002017Microbial Respiration and Formate Oxidation as Metabolic Signatures of Inflammation-Associated Dysbiosis.25608871Kleiner M, Hooper LV, Duerkop BABMC genomicsKleiner M, Hooper LV, Duerkop BA. Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes. BMC Genomics. 2015 Jan 22; 16:7.BMC Genomics2015-01-22T00:00:002015Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes.27578757Duerkop BA, Huo W, Bhardwaj P, Palmer KL, Hooper LVmBioDuerkop BA, Huo W, Bhardwaj P, Palmer KL, Hooper LV. Molecular Basis for Lytic Bacteriophage Resistance in Enterococci. mBio. 2016 08 30; 7(4).mBio2016-08-30T00:00:002016Molecular Basis for Lytic Bacteriophage Resistance in Enterococci.2019-08-31NIHDUERKOP, BRECK A2014-09-15The contribution of bacteriophages to host-microbe interactions in the intestineK01DK1024362013-06-30NIHDUERKOP, BRECK A2010-07-01Interactions of a commensal bacterium with the intestinal mucosal surfaceF32DK089718Principal InvestigatorPrincipal Investigator18487338Duerkop BA, Herman JP, Ulrich RL, Churchill ME, Greenberg EPJournal of bacteriologyDuerkop BA, Herman JP, Ulrich RL, Churchill ME, Greenberg EP. The Burkholderia mallei BmaR3-BmaI3 quorum-sensing system produces and responds to N-3-hydroxy-octanoyl homoserine lactone. J Bacteriol. 2008 Jul; 190(14):5137-41.J Bacteriol2008-05-16T00:00:002008The Burkholderia mallei BmaR3-BmaI3 quorum-sensing system produces and responds to N-3-hydroxy-octanoyl homoserine lactone.KellyDoranKelly S. Doran39.74545800000000-104.8393691000000013031Doran, KellyProfessorAlexanderHorswillAlexander R. Horswill39.74545800000000-104.8393691000000013032Horswill, AlexanderProfessorBradySpencerBrady Spencer39.74545800000000-104.8393691000000013040Spencer, BradyPost-Doctoral Fellow19376863Duerkop BA, Varga J, Chandler JR, Peterson SB, Herman JP, Churchill ME, Parsek MR, Nierman WC, Greenberg EPJournal of bacteriologyDuerkop BA, Varga J, Chandler JR, Peterson SB, Herman JP, Churchill ME, Parsek MR, Nierman WC, Greenberg EP. Quorum-sensing control of antibiotic synthesis in Burkholderia thailandensis. J Bacteriol. 2009 Jun; 191(12):3909-18.J Bacteriol2009-04-17T00:00:002009Quorum-sensing control of antibiotic synthesis in Burkholderia thailandensis.19648250Chandler JR, Duerkop BA, Hinz A, West TE, Herman JP, Churchill ME, Skerrett SJ, Greenberg EPJournal of bacteriologyChandler JR, Duerkop BA, Hinz A, West TE, Herman JP, Churchill ME, Skerrett SJ, Greenberg EP. Mutational analysis of Burkholderia thailandensis quorum sensing and self-aggregation. J Bacteriol. 2009 Oct; 191(19):5901-9.J Bacteriol2009-07-31T00:00:002009Mutational analysis of Burkholderia thailandensis quorum sensing and self-aggregation.Authorship 175097529323293Zhu W, Winter MG, Byndloss MX, Spiga L, Duerkop BA, Hughes ER, B?ttner L, de Lima Rom?o E, Behrendt CL, Lopez CA, Sifuentes-Dominguez L, Huff-Hardy K, Wilson RP, Gillis CC, T?kel ?, Koh AY, Burstein E, Hooper LV, B?umler AJ, Winter SENatureZhu W, Winter MG, Byndloss MX, Spiga L, Duerkop BA, Hughes ER, B?ttner L, de Lima Rom?o E, Behrendt CL, Lopez CA, Sifuentes-Dominguez L, Huff-Hardy K, Wilson RP, Gillis CC, T?kel ?, Koh AY, Burstein E, Hooper LV, B?umler AJ, Winter SE. Precision editing of the gut microbiota ameliorates colitis. Nature. 2018 01 11; 553(7687):208-211.Nature2018-01-03T00:00:002018Precision editing of the gut microbiota ameliorates colitis.D016984Living Beings8120.985225Enterococcus faeciumAuthorship 184140229997604Chatterjee A, Duerkop BAFrontiers in microbiologyChatterjee A, Duerkop BA. Beyond Bacteria: Bacteriophage-Eukaryotic Host Interactions Reveal Emerging Paradigms of Health and Disease. Front Microbiol. 2018; 9:1394.Front Microbiol2018-06-27T00:00:002018Beyond Bacteria: Bacteriophage-Eukaryotic Host Interactions Reveal Emerging Paradigms of Health and Disease.Authorship 184794130038310Duerkop BA, Kleiner M, Paez-Espino D, Zhu W, Bushnell B, Hassell B, Winter SE, Kyrpides NC, Hooper LVNature microbiologyDuerkop BA, Kleiner M, Paez-Espino D, Zhu W, Bushnell B, Hassell B, Winter SE, Kyrpides NC, Hooper LV. Murine colitis reveals a disease-associated bacteriophage community. Nat Microbiol. 2018 09; 3(9):1023-1031.Nat Microbiol2018-07-23T00:00:002018Murine colitis reveals a disease-associated bacteriophage community.Authorship 190544130359456Duerkop BAPLoS pathogensDuerkop BA. Bacteriophages shift the focus of the mammalian microbiota. PLoS Pathog. 2018 10; 14(10):e1007310.PLoS Pathog2018-10-25T00:00:002018Bacteriophages shift the focus of the mammalian microbiota.D016908Disorders54700.913283Gram-Positive Bacterial Infections2023-08-31NIHDUERKOP, BRECK A2018-09-14Mechanistic basis of bacteriophages for the decolonization of vancomycin resistant enterococci in the intestine.R01AI141479Principal InvestigatorAuthorship 195161230763529Chatterjee A, Duerkop BACell host & microbeChatterjee A, Duerkop BA. Sugar and Fatty Acids Ack-celerate Prophage Induction. Cell Host Microbe. 2019 02 13; 25(2):175-176.Cell Host Microbe2019-02-13T00:00:002019Sugar and Fatty Acids Ack-celerate Prophage Induction.Authorship 199044930936157Chatterjee A, Johnson CN, Luong P, Hullahalli K, McBride SW, Schubert AM, Palmer KL, Carlson PE, Duerkop BAInfection and immunityChatterjee A, Johnson CN, Luong P, Hullahalli K, McBride SW, Schubert AM, Palmer KL, Carlson PE, Duerkop BA. Bacteriophage Resistance Alters Antibiotic-Mediated Intestinal Expansion of Enterococci. Infect Immun. 2019 06; 87(6).Infect Immun2019-05-21T00:00:002019Bacteriophage Resistance Alters Antibiotic-Mediated Intestinal Expansion of Enterococci.D001435Living Beings40750.886211BacteriophagesSOM-IMM MICRO GENERAL OPERAuthorship 204906531341074Price VJ, McBride SW, Hullahalli K, Chatterjee A, Duerkop BA, Palmer KLmSpherePrice VJ, McBride SW, Hullahalli K, Chatterjee A, Duerkop BA, Palmer KL. Enterococcus faecalis CRISPR-Cas Is a Robust Barrier to Conjugative Antibiotic Resistance Dissemination in the Murine Intestine. mSphere. 2019 07 24; 4(4).mSphere2019-07-24T00:00:002019Enterococcus faecalis CRISPR-Cas Is a Robust Barrier to Conjugative Antibiotic Resistance Dissemination in the Murine Intestine.D016983Living Beings14190.974401EnterococcusD013293Living Beings14250.970281Enterococcus faecalisEcology & Evolutionary BiologySOM-MEDGastroenterologyInfectious DiseaseUniversity of Colorado BoulderUniversity of Colorado Denver - Anschutz Medical CampusRossKedlRoss McNaul Kedl39.74545800000000-104.839369100000002093Kedl, RossProfessorNoahFiererNoah Fierer40.00823370000000-105.269307100000002360Fierer, NoahProfessorSeanColganSean P Colgan39.74515960000000-104.840628000000002441Colgan, SeanDistinguished ProfessorThomasMorrisonThomas Edward Morrison39.74545800000000-104.839369100000003277Morrison, ThomasProfessorFVazquez-TorresF Andres Vazquez-Torres39.74545800000000-104.83936910000000628Vazquez-Torres, FProfessorDanielFrankDaniel N Frank39.74515960000000-104.84062800000000526Frank, DanielAssociate ProfessorBruceMcCollisterBruce D McCollister39.74528180000000-104.83757270000000793McCollister, BruceAssociate ProfessorMartinVoskuilMartin I. Voskuil39.74545800000000-104.839369100000001882Voskuil, MartinAssociate ProfessorAuthorship 208315531527030Rodrigues M, McBride SW, Hullahalli K, Palmer KL, Duerkop BAAntimicrobial agents and chemotherapyRodrigues M, McBride SW, Hullahalli K, Palmer KL, Duerkop BA. Conjugative Delivery of CRISPR-Cas9 for the Selective Depletion of Antibiotic-Resistant Enterococci. Antimicrob Agents Chemother. 2019 11; 63(11).Antimicrob Agents Chemother2019-10-22T00:00:002019Conjugative Delivery of CRISPR-Cas9 for the Selective Depletion of Antibiotic-Resistant Enterococci.Authorship 212131231754272Johnson CN, Duerkop BANature microbiologyJohnson CN, Duerkop BA. Dyeing to connect. Nat Microbiol. 2019 12; 4(12):2033-2034.Nat Microbiol2019-12-01T00:00:002019Dyeing to connect.Authorship 216871232094257Mangalea MR, Duerkop BAInfection and immunityMangalea MR, Duerkop BA. Fitness Trade-Offs Resulting from Bacteriophage Resistance Potentiate Synergistic Antibacterial Strategies. Infect Immun. 2020 06 22; 88(7).Infect Immun2020-06-22T00:00:002020Fitness Trade-Offs Resulting from Bacteriophage Resistance Potentiate Synergistic Antibacterial Strategies.Authorship 217218732127456Chatterjee A, Willett JLE, Nguyen UT, Monogue B, Palmer KL, Dunny GM, Duerkop BAmBioChatterjee A, Willett JLE, Nguyen UT, Monogue B, Palmer KL, Dunny GM, Duerkop BA. Parallel Genomics Uncover Novel Enterococcal-Bacteriophage Interactions. mBio. 2020 03 03; 11(2).mBio2020-03-03T00:00:002020Parallel Genomics Uncover Novel Enterococcal-Bacteriophage Interactions.Authorship 222381932571816Morrisette T, Lev KL, Kebriaei R, Abdul-Mutakabbir JC, Stamper KC, Morales S, Lehman SM, Canfield GS, Duerkop BA, Arias CA, Rybak MJAntimicrobial agents and chemotherapyMorrisette T, Lev KL, Kebriaei R, Abdul-Mutakabbir JC, Stamper KC, Morales S, Lehman SM, Canfield GS, Duerkop BA, Arias CA, Rybak MJ. Bacteriophage-Antibiotic Combinations for Enterococcus faecium with Varying Bacteriophage and Daptomycin Susceptibilities. Antimicrob Agents Chemother. 2020 08 20; 64(9).Antimicrob Agents Chemother2020-08-20T00:00:002020Bacteriophage-Antibiotic Combinations for Enterococcus faecium with Varying Bacteriophage and Daptomycin Susceptibilities.Authorship 224107232652484Canfield GS, Duerkop BACurrent opinion in microbiologyCanfield GS, Duerkop BA. Molecular mechanisms of enterococcal-bacteriophage interactions and implications for human health. Curr Opin Microbiol. 2020 08; 56:38-44.Curr Opin Microbiol2020-07-08T00:00:002020Molecular mechanisms of enterococcal-bacteriophage interactions and implications for human health.Authorship 225249732778611Alhajjar N, Chatterjee A, Spencer BL, Burcham LR, Willett JLE, Dunny GM, Duerkop BA, Doran KSInfection and immunityAlhajjar N, Chatterjee A, Spencer BL, Burcham LR, Willett JLE, Dunny GM, Duerkop BA, Doran KS. Genome-Wide Mutagenesis Identifies Factors Involved in Enterococcus faecalis Vaginal Adherence and Persistence. Infect Immun. 2020 09 18; 88(10).Infect Immun2020-09-18T00:00:002020Genome-Wide Mutagenesis Identifies Factors Involved in Enterococcus faecalis Vaginal Adherence and Persistence.Authorship 230788533190645Kleiner M, Bushnell B, Sanderson KE, Hooper LV, Duerkop BAMicrobiomeKleiner M, Bushnell B, Sanderson KE, Hooper LV, Duerkop BA. Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities. Microbiome. 2020 11 15; 8(1):158.Microbiome2020-11-15T00:00:002020Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities.Authorship 2344723Authorship 2336864Authorship 2363321033411815Chatterjee A, Willett JLE, Dunny GM, Duerkop BAPLoS geneticsChatterjee A, Willett JLE, Dunny GM, Duerkop BA. Phage infection and sub-lethal antibiotic exposure mediate Enterococcus faecalis type VII secretion system dependent inhibition of bystander bacteria. PLoS Genet. 2021 01; 17(1):e1009204.PLoS Genet2021-01-07T00:00:002021Phage infection and sub-lethal antibiotic exposure mediate Enterococcus faecalis type VII secretion system dependent inhibition of bystander bacteria.33446593Spencer BL, Chatterjee A, Duerkop BA, Baker CJ, Doran KSMicrobiology resource announcementsSpencer BL, Chatterjee A, Duerkop BA, Baker CJ, Doran KS. Complete Genome Sequence of Neonatal Clinical Group B Streptococcal Isolate CJB111. Microbiol Resour Announc. 2021 Jan 14; 10(2).Microbiol Resour Announc2021-01-14T00:00:002021Complete Genome Sequence of Neonatal Clinical Group B Streptococcal Isolate CJB111.33649110Canfield GS, Chatterjee A, Espinosa J, Mangalea MR, Sheriff EK, Keidan M, McBride SW, McCollister BD, Hang HC, Duerkop BAAntimicrobial agents and chemotherapyCanfield GS, Chatterjee A, Espinosa J, Mangalea MR, Sheriff EK, Keidan M, McBride SW, McCollister BD, Hang HC, Duerkop BA. Lytic bacteriophages facilitate antibiotic sensitization of Enterococcus faecium. Antimicrob Agents Chemother. 2023 05 01; 65(5).Antimicrob Agents Chemother2021-03-01T00:00:002021Lytic bacteriophages facilitate antibiotic sensitization of Enterococcus faecium.Authorship 2401011433957082Mangalea MR, Paez-Espino D, Kieft K, Chatterjee A, Chriswell ME, Seifert JA, Feser ML, Demoruelle MK, Sakatos A, Anantharaman K, Deane KD, Kuhn KA, Holers VM, Duerkop BACell host & microbeMangalea MR, Paez-Espino D, Kieft K, Chatterjee A, Chriswell ME, Seifert JA, Feser ML, Demoruelle MK, Sakatos A, Anantharaman K, Deane KD, Kuhn KA, Holers VM, Duerkop BA. Individuals at risk for rheumatoid arthritis harbor differential intestinal bacteriophage communities with distinct metabolic potential. Cell Host Microbe. 2021 05 12; 29(5):726-739.e5.Cell Host Microbe2021-05-05T00:00:002021Individuals at risk for rheumatoid arthritis harbor differential intestinal bacteriophage communities with distinct metabolic potential.Authorship 242553334237097Palacios Araya D, Palmer KL, Duerkop BAPLoS pathogensPalacios Araya D, Palmer KL, Duerkop BA. CRISPR-based antimicrobials to obstruct antibiotic-resistant and pathogenic bacteria. PLoS Pathog. 2021 07; 17(7):e1009672.PLoS Pathog2021-07-08T00:00:002021CRISPR-based antimicrobials to obstruct antibiotic-resistant and pathogenic bacteria.Authorship 244302634255542Kirsch JM, Brzozowski RS, Faith D, Round JL, Secor PR, Duerkop BAAnnual review of virologyKirsch JM, Brzozowski RS, Faith D, Round JL, Secor PR, Duerkop BA. Bacteriophage-Bacteria Interactions in the Gut: From Invertebrates to Mammals. Annu Rev Virol. 2021 09 29; 8(1):95-113.Annu Rev Virol2021-07-13T00:00:002021Bacteriophage-Bacteria Interactions in the Gut: From Invertebrates to Mammals.Authorship 245313334370561Johnson CN, Sheriff EK, Duerkop BA, Chatterjee AJournal of bacteriologyJohnson CN, Sheriff EK, Duerkop BA, Chatterjee A. Let Me Upgrade You: Impact of Mobile Genetic Elements on Enterococcal Adaptation and Evolution. J Bacteriol. 2021 10 12; 203(21):e0017721.J Bacteriol2021-08-09T00:00:002021Let Me Upgrade You: Impact of Mobile Genetic Elements on Enterococcal Adaptation and Evolution.Authorship 251660434723631Morrisette T, Lev KL, Canfield GS, Duerkop BA, Kebriaei R, Stamper KC, Holger D, Lehman SM, Willcox S, Arias CA, Rybak MJAntimicrobial agents and chemotherapyMorrisette T, Lev KL, Canfield GS, Duerkop BA, Kebriaei R, Stamper KC, Holger D, Lehman SM, Willcox S, Arias CA, Rybak MJ. Evaluation of Bacteriophage Cocktails Alone and in Combination with Daptomycin against Daptomycin-Nonsusceptible Enterococcus faecium. Antimicrob Agents Chemother. 2022 01 18; 66(1):e0162321.Antimicrob Agents Chemother2021-11-01T00:00:002021Evaluation of Bacteriophage Cocktails Alone and in Combination with Daptomycin against Daptomycin-Nonsusceptible Enterococcus faecium.GarimaAryaGarima Arya20655Arya, GarimaPost-Doctoral FellowAuthorship 253986334898641Araya DP, Palmer KL, Duerkop BAPLoS pathogensAraya DP, Palmer KL, Duerkop BA. Correction: CRISPR-based antimicrobials to obstruct antibiotic-resistant and pathogenic bacteria. PLoS Pathog. 2021 Dec; 17(12):e1010153.PLoS Pathog2021-12-13T00:00:002021Correction: CRISPR-based antimicrobials to obstruct antibiotic-resistant and pathogenic bacteria.Authorship 258381835326855Lev K, Kunz Coyne AJ, Kebriaei R, Morrisette T, Stamper K, Holger DJ, Canfield GS, Duerkop BA, Arias CA, Rybak MJAntibiotics (Basel, Switzerland)Lev K, Kunz Coyne AJ, Kebriaei R, Morrisette T, Stamper K, Holger DJ, Canfield GS, Duerkop BA, Arias CA, Rybak MJ. Evaluation of Bacteriophage-Antibiotic Combination Therapy for Biofilm-Embedded MDR Enterococcus faecium. Antibiotics (Basel). 2022 Mar 15; 11(3).Antibiotics (Basel)2022-03-15T00:00:002022Evaluation of Bacteriophage-Antibiotic Combination Therapy for Biofilm-Embedded MDR Enterococcus faecium.Authorship 259500935478284Johnson CN, Palacios Araya D, Schink V, Islam M, Mangalea MR, Decurtis EK, Ngo TC, Palmer KL, Duerkop BAMicrobiologyOpenJohnson CN, Palacios Araya D, Schink V, Islam M, Mangalea MR, Decurtis EK, Ngo TC, Palmer KL, Duerkop BA. Genetically distant bacteriophages select for unique genomic changes in Enterococcus faecalis. Microbiologyopen. 2022 04; 11(2):e1273.Microbiologyopen2022-04-01T00:00:002022Genetically distant bacteriophages select for unique genomic changes in Enterococcus faecalis.Authorship 27639418Authorship 2756821136711447Colbert JF, Kirsch JM, Erzen CL, Langou?t-Astri? CJ, Thompson GE, McMurtry SA, Kofonow JM, Robertson CE, Kovacs EJ, Sullivan RC, Hippensteel JA, Sawant NV, De Nisco NJ, McCollister BD, Schwartz RS, Horswill AR, Frank DN, Duerkop BA, Schmidt EPbioRxiv : the preprint server for biologyColbert JF, Kirsch JM, Erzen CL, Langou?t-Astri? CJ, Thompson GE, McMurtry SA, Kofonow JM, Robertson CE, Kovacs EJ, Sullivan RC, Hippensteel JA, Sawant NV, De Nisco NJ, McCollister BD, Schwartz RS, Horswill AR, Frank DN, Duerkop BA, Schmidt EP. Aging-associated augmentation of gut microbiome virulence capability drives sepsis severity. bioRxiv. 2023 Jan 11.bioRxiv2023-01-11T00:00:002023Aging-associated augmentation of gut microbiome virulence capability drives sepsis severity.36139953Kunz Coyne AJ, Stamper K, Kebriaei R, Holger DJ, El Ghali A, Morrisette T, Biswas B, Wilson M, Deschenes MV, Canfield GS, Duerkop BA, Arias CA, Rybak MJAntibiotics (Basel, Switzerland)Kunz Coyne AJ, Stamper K, Kebriaei R, Holger DJ, El Ghali A, Morrisette T, Biswas B, Wilson M, Deschenes MV, Canfield GS, Duerkop BA, Arias CA, Rybak MJ. Phage Cocktails with Daptomycin and Ampicillin Eradicates Biofilm-Embedded Multidrug-Resistant Enterococcus faecium with Preserved Phage Susceptibility. Antibiotics (Basel). 2022 Aug 30; 11(9).Antibiotics (Basel)2022-08-30T00:00:002022Phage Cocktails with Daptomycin and Ampicillin Eradicates Biofilm-Embedded Multidrug-Resistant Enterococcus faecium with Preserved Phage Susceptibility.Authorship 2823251837102874Colbert JF, Kirsch JM, Erzen CL, Langou?t-Astri? CJ, Thompson GE, McMurtry SA, Kofonow JM, Robertson CE, Kovacs EJ, Sullivan RC, Hippensteel JA, Sawant NV, De Nisco NJ, McCollister BD, Schwartz RS, Horswill AR, Frank DN, Duerkop BA, Schmidt EPmBioColbert JF, Kirsch JM, Erzen CL, Langou?t-Astri? CJ, Thompson GE, McMurtry SA, Kofonow JM, Robertson CE, Kovacs EJ, Sullivan RC, Hippensteel JA, Sawant NV, De Nisco NJ, McCollister BD, Schwartz RS, Horswill AR, Frank DN, Duerkop BA, Schmidt EP. Aging-Associated Augmentation of Gut Microbiome Virulence Capability Drives Sepsis Severity. mBio. 2023 06 27; 14(3):e0005223.mBio2023-04-27T00:00:002023Aging-Associated Augmentation of Gut Microbiome Virulence Capability Drives Sepsis Severity.Authorship 2848498Authorship 284451337267422Kirsch JM, Ely S, Stellfox ME, Hullahalli K, Luong P, Palmer KL, Van Tyne D, Duerkop BAPLoS pathogensKirsch JM, Ely S, Stellfox ME, Hullahalli K, Luong P, Palmer KL, Van Tyne D, Duerkop BA. Targeted IS-element sequencing uncovers transposition dynamics during selective pressure in enterococci. PLoS Pathog. 2023 06; 19(6):e1011424.PLoS Pathog2023-06-02T00:00:002023Targeted IS-element sequencing uncovers transposition dynamics during selective pressure in enterococci.37258871Mangalea MR, Keift K, Duerkop BA, Anantharaman KMethods in molecular biology (Clifton, N.J.)Mangalea MR, Keift K, Duerkop BA, Anantharaman K. Assembly and Annotation of Viral Metagenomes from Short-Read Sequencing Data. Methods Mol Biol. 2023; 2649:317-337.Methods Mol Biol2023-01-01T00:00:002023Assembly and Annotation of Viral Metagenomes from Short-Read Sequencing Data.true1Associate ProfessorAssociate Professortrue1Associate ProfessorAssociate Professortrue1Asst ProfessorAsst ProfessorAuthorship 294386337873088Kirsch JM, Hryckowian AJ, Duerkop BAbioRxiv : the preprint server for biologyKirsch JM, Hryckowian AJ, Duerkop BA. Insertion sequence driven evolution of the microbiota revealed by a novel metagenomics pipeline. bioRxiv. 2024 Feb 14.bioRxiv2024-02-14T00:00:002024Insertion sequence driven evolution of the microbiota revealed by a novel metagenomics pipeline.true1Distinguished ProfessorDistinguished ProfessorSusanneMeileSusanne Meile29302Meile, SusannePost-Doctoral FellowAuthorship 295459738014348Johnson CN, Bullen NP, Andersen SE, Arya G, Marotta SR, Whitney JC, Duerkop BAbioRxiv : the preprint server for biologyJohnson CN, Bullen NP, Andersen SE, Arya G, Marotta SR, Whitney JC, Duerkop BA. Evolution of a small phage protein overcomes antiphage defense in Enterococcus faecalis. bioRxiv. 2023 Dec 02.bioRxiv2023-12-02T00:00:002023Evolution of a small phage protein overcomes antiphage defense in Enterococcus faecalis.true1ProfessorProfessortrue1ProfessorProfessortrue1Post-Doctoral FellowPost-Doctoral Fellowtrue1Associate ProfessorAssociate Professortrue1ProfessorProfessortrue1Post-Doctoral FellowPost-Doctoral Fellowtrue1ProfessorProfessortrue1Post-Doctoral FellowPost-Doctoral Fellowtrue1Asst Professor-ResearchAsst Professor-Researchtrue1ProfessorProfessortrue1Associate ProfessorAssociate Professortrue1ProfessorProfessor