 Connection
Michael Shirts to Models, Molecular
This is a "connection" page, showing publications Michael Shirts has written about Models, Molecular.
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Connection Strength |
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0.974 |
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Monroe JI, El-Nahal WG, Shirts MR. Investigating the mutation resistance of nonnucleoside inhibitors of HIV-RT using multiple microsecond atomistic simulations. Proteins. 2014 Jan; 82(1):130-44.
Score: 0.280
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Ramirez DA, Shrimpton A, Shirts MR, Hough LE. Nonspecific interactions can lead to liquid-liquid phase separation in coiled-coil protein models. Biophys J. 2026 Jan 06; 125(1):218-234.
Score: 0.163
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Shirts MR, Pande VS. Solvation free energies of amino acid side chain analogs for common molecular mechanics water models. J Chem Phys. 2005 Apr 01; 122(13):134508.
Score: 0.156
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Fobe TL, Walker CC, Meek GA, Shirts MR. Folding Coarse-Grained Oligomer Models with PyRosetta. J Chem Theory Comput. 2022 Oct 11; 18(10):6354-6369.
Score: 0.131
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Merz PT, Shirts MR. Testing for physical validity in molecular simulations. PLoS One. 2018; 13(9):e0202764.
Score: 0.099
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Wang K, Chodera JD, Yang Y, Shirts MR. Identifying ligand binding sites and poses using GPU-accelerated Hamiltonian replica exchange molecular dynamics. J Comput Aided Mol Des. 2013 Dec; 27(12):989-1007.
Score: 0.071
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Andrzejewski SJ, Friedman AJ, Mains K, Thompson A, Hamel NL, Sankaran B, Zwart PH, Shirts MR, Fox JM. Protein-Protein Complex Stability Controls Substrate Scope in a ß-Ketoacyl-ACP Reductase Specific for Medium Chains. Angew Chem Int Ed Engl. 2025 Sep 26; 64(40):e202508316.
Score: 0.040
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Sorin EJ, Rhee YM, Shirts MR, Pande VS. The solvation interface is a determining factor in peptide conformational preferences. J Mol Biol. 2006 Feb 10; 356(1):248-56.
Score: 0.010
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Pande VS, Baker I, Chapman J, Elmer SP, Khaliq S, Larson SM, Rhee YM, Shirts MR, Snow CD, Sorin EJ, Zagrovic B. Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing. Biopolymers. 2003 Jan; 68(1):91-109.
Score: 0.008
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Zagrovic B, Snow CD, Shirts MR, Pande VS. Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing. J Mol Biol. 2002 Nov 08; 323(5):927-37.
Score: 0.008
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Zagrovic B, Snow CD, Khaliq S, Shirts MR, Pande VS. Native-like mean structure in the unfolded ensemble of small proteins. J Mol Biol. 2002 Oct 11; 323(1):153-64.
Score: 0.008
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Connection Strength
The connection strength for concepts is the sum of the scores for each matching publication.
Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.
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