Colorado PROFILES, The Colorado Clinical and Translational Sciences Institute (CCTSI)
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James Pustejovsky

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InstitutionUniversity of Colorado Boulder
DepartmentCognitive Sci Institute-Admin

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Holderness E, Atwood B, Verhagen M, Shinn AK, Cawkwell P, Cerruti H, Pustejovsky J, Hall MH. Machine learning in psychiatric health records: A gold standard approach to trauma annotation. Transl Psychiatry. 2025 Aug 01; 15(1):260. PMID: 40750586.
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    2. Chen M, Pustejovsky JE. Adapting methods for correcting selective reporting bias in meta-analysis of dependent effect sizes. Psychol Methods. 2025 Jul 10. PMID: 40638274.
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    3. Treves IN, Chen YY, Wilson CL, Verdonk C, Qina'au J, Pustejovsky JE, Goldberg SB, Mehling W, Schuman-Olivier Z, Khalsa SS. Minding the Body: A Meta-analysis of the Effects of Mindfulness Meditation Training on Self-reported Interoception. Res Sq. 2025 Jun 04. PMID: 40502790.
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    4. Grekov P, Pustejovsky JE, Klingbeil DA. Flexible distributional models for meta-analysis of reading fluency outcomes from single-case designs: An examination using Bayesian methods. J Sch Psychol. 2025 06; 110:101429. PMID: 40506161.
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    5. Atwood B, Holderness E, Verhagen M, Shinn AK, Cawkwell P, Cerruti H, Pustejovsky J, Hall MH. Machine Learning in Psychiatric Health Records: A Gold Standard Approach to Trauma Annotation. medRxiv. 2025 Mar 11. PMID: 40162236.
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    6. Sandbank M, Pustejovsky JE. Evidence That Intervention Dosage Is Associated With Better Outcomes in Autism-Reply. JAMA Pediatr. 2025 Jan 01; 179(1):102-103. PMID: 39495503.
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    7. Tu J, Rim K, Ye B, Lai K, Pustejovsky J. Dense Paraphrasing for multimodal dialogue interpretation. Front Artif Intell. 2024; 7:1479905. PMID: 39748943.
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    8. Protzko J, Krosnick J, Nelson L, Nosek BA, Axt J, Berent M, Buttrick N, DeBell M, Ebersole CR, Lundmark S, MacInnis B, O'Donnell M, Perfecto H, Pustejovsky JE, Roeder SS, Walleczek J, Schooler JW. Retraction Note: High replicability of newly discovered social-behavioural findings is achievable. Nat Hum Behav. 2024 Oct; 8(10):2067. PMID: 39317794.
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    9. Vembye MH, Pustejovsky JE, Pigott TD. Conducting power analysis for meta-analysis with dependent effect sizes: Common guidelines and an introduction to the POMADE R package. Res Synth Methods. 2024 Nov; 15(6):1214-1230. PMID: 39293999.
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    10. Sandbank M, Pustejovsky JE, Bottema-Beutel K, Caldwell N, Feldman JI, Crowley LaPoint S, Woynaroski T. Determining Associations Between Intervention Amount and Outcomes for Young Autistic Children: A Meta-Analysis. JAMA Pediatr. 2024 Aug 01; 178(8):763-773. PMID: 38913359.
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    11. Poppe A, Ritter FDE, Bais L, Pustejovsky JE, van Tol MJ, Curcic-Blake B, Pijnenborg GHM, van der Meer L. The efficacy of combining cognitive training and noninvasive brain stimulation: A transdiagnostic systematic review and meta-analysis. Psychol Bull. 2024 Feb; 150(2):192-213. PMID: 37956054.
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    12. Protzko J, Krosnick J, Nelson L, Nosek BA, Axt J, Berent M, Buttrick N, DeBell M, Ebersole CR, Lundmark S, MacInnis B, O'Donnell M, Perfecto H, Pustejovsky JE, Roeder SS, Walleczek J, Schooler JW. High replicability of newly discovered social-behavioural findings is achievable. Nat Hum Behav. 2024 Feb; 8(2):311-319. PMID: 37945809.
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    13. Oved I, Krishnaswamy N, Pustejovsky J, Hartshorne JK. Neither neural networks nor the language-of-thought alone make a complete game. Behav Brain Sci. 2023 09 28; 46:e285. PMID: 37766611.
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    14. Reichle J, Pustejovsky JE, Vannest KJ, Foster M, Pierson LM, Wattanawongwan S, Chen M, Fuller MC, Haas AN, Bhat BH, Sallese MR, Smith SD, Yllades V, Rodriguez D, Yoro A, Ganz JB. Systematic Review of Variables Related to Instruction in Augmentative and Alternative Communication Implementation: Group and Single-Case Design. Am J Speech Lang Pathol. 2023 07 10; 32(4):1734-1757. PMID: 37235744.
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    15. Holderness E, Atwood B, Verhagen M, Shinn A, Cawkwell P, Pustejovsky J, Hall MH. Annotation of Trauma-related Linguistic Features in Psychiatric Electronic Health Records for Machine Learning Applications. Res Sq. 2023 Mar 28. PMID: 37034796.
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    16. Lee YR, Pustejovsky JE. Comparing random effects models, ordinary least squares, or fixed effects with cluster robust standard errors for cross-classified data. Psychol Methods. 2024 Dec; 29(6):1084-1099. PMID: 36892913.
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    17. Chen M, Pustejovsky JE, Klingbeil DA, Van Norman ER. Between-case standardized mean differences: Flexible methods for single-case designs. J Sch Psychol. 2023 06; 98:16-38. PMID: 37253578.
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    18. Henlein A, Gopinath A, Krishnaswamy N, Mehler A, Pustejovsky J. Grounding human-object interaction to affordance behavior in multimodal datasets. Front Artif Intell. 2023; 6:1084740. PMID: 36793938.
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    19. Ganz JB, Pustejovsky JE, Reichle J, Vannest KJ, Foster M, Pierson LM, Wattanawongwan S, Bernal AJ, Chen M, Haas AN, Liao CY, Sallese MR, Skov R, Smith SD. Participant characteristics predicting communication outcomes in AAC implementation for individuals with ASD and IDD: a systematic review and meta-analysis. Augment Altern Commun. 2023 03; 39(1):7-22. PMID: 36262108.
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    20. Winters KL, Jasso J, Pustejovsky JE, Byrd CT. Investigating Narrative Performance in Children With Developmental Language Disorder: A Systematic Review and Meta-Analysis. J Speech Lang Hear Res. 2022 Oct 17; 65(10):3908-3929. PMID: 36179252.
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    21. Krishnaswamy N, Pustejovsky J. Affordance embeddings for situated language understanding. Front Artif Intell. 2022; 5:774752. PMID: 36213167.
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    22. Chen M, Pustejovsky JE. Multilevel meta-analysis of single-case experimental designs using robust variance estimation. Psychol Methods. 2024 Jun; 29(3):537-560. PMID: 35786985.
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    23. Kazeminejad G, Palmer M, Brown SW, Pustejovsky J. Componential Analysis of English Verbs. Front Artif Intell. 2022; 5:780385. PMID: 35707764.
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    24. Joshi M, Pustejovsky JE, Beretvas SN. Cluster wild bootstrapping to handle dependent effect sizes in meta-analysis with a small number of studies. Res Synth Methods. 2022 Jul; 13(4):457-477. PMID: 35218309.
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    25. Brown SW, Bonn J, Kazeminejad G, Zaenen A, Pustejovsky J, Palmer M. Semantic Representations for NLP Using VerbNet and the Generative Lexicon. Front Artif Intell. 2022; 5:821697. PMID: 35493615.
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    26. Austin CR, Vaughn S, Clemens NH, Pustejovsky JE, Boucher AN. The Relative Effects of Instruction Linking Word Reading and Word Meaning Compared to Word Reading Instruction Alone on the Accuracy, Fluency, and Word Meaning Knowledge of 4th-5th Grade Students With Dyslexia. Sci Stud Read. 2022; 26(3):204-222. PMID: 36381297.
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    27. Pustejovsky JE, Tipton E. Meta-analysis with Robust Variance Estimation: Expanding the Range of Working Models. Prev Sci. 2022 04; 23(3):425-438. PMID: 33961175.
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    28. McLouth LE, Ford CG, Pustejovsky JE, Park CL, Sherman AC, Trevino K, Salsman JM. A systematic review and meta-analysis of effects of psychosocial interventions on spiritual well-being in adults with cancer. Psychooncology. 2021 02; 30(2):147-158. PMID: 34602807.
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    29. Rodgers MA, Pustejovsky JE. Evaluating meta-analytic methods to detect selective reporting in the presence of dependent effect sizes. Psychol Methods. 2021 Apr; 26(2):141-160. PMID: 32673040.
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    30. Salsman JM, Pustejovsky JE, Schueller SM, Hernandez R, Berendsen M, McLouth LES, Moskowitz JT. Psychosocial interventions for cancer survivors: A meta-analysis of effects on positive affect. J Cancer Surviv. 2019 Dec; 13(6):943-955. PMID: 31741250.
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    31. Holderness E, Miller N, Cawkwell P, Bolton K, Meteer M, Pustejovsky J, Hall MH. Analysis of risk factor domains in psychosis patient health records. J Biomed Semantics. 2019 10 31; 10(1):19. PMID: 31672168.
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    32. Pustejovsky JE, Swan DM, English KW. An Examination of Measurement Procedures and Characteristics of Baseline Outcome Data in Single-Case Research. Behav Modif. 2023 11; 47(6):1423-1454. PMID: 31375029.
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    33. Merluzzi TV, Pustejovsky JE, Philip EJ, Sohl SJ, Berendsen M, Salsman JM. Interventions to enhance self-efficacy in cancer patients: A meta-analysis of randomized controlled trials. Psychooncology. 2019 09; 28(9):1781-1790. PMID: 31206917.
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    34. Park CL, Pustejovsky JE, Trevino K, Sherman AC, Esposito C, Berendsen M, Salsman JM. Effects of psychosocial interventions on meaning and purpose in adults with cancer: A systematic review and meta-analysis. Cancer. 2019 07 15; 125(14):2383-2393. PMID: 31034600.
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    35. Tipton E, Pustejovsky JE, Ahmadi H. Current practices in meta-regression in psychology, education, and medicine. Res Synth Methods. 2019 Jun; 10(2):180-194. PMID: 30616301.
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    36. Tipton E, Pustejovsky JE, Ahmadi H. A history of meta-regression: Technical, conceptual, and practical developments between 1974 and 2018. Res Synth Methods. 2019 Jun; 10(2):161-179. PMID: 30589224.
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    37. Pustejovsky JE, Rodgers MA. Testing for funnel plot asymmetry of standardized mean differences. Res Synth Methods. 2019 Mar; 10(1):57-71. PMID: 30506832.
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    38. Pustejovsky JE. Procedural sensitivities of effect sizes for single-case designs with directly observed behavioral outcome measures. Psychol Methods. 2019 Apr; 24(2):217-235. PMID: 29911874.
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    39. Odom SL, Barton EE, Reichow B, Swaminathan H, Pustejovsky JE. Between-case standardized effect size analysis of single case designs: Examination of the two methods. Res Dev Disabil. 2018 Aug; 79:88-96. PMID: 29807692.
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    40. Swan DM, Pustejovsky JE. A Gradual Effects Model for Single-Case Designs. Multivariate Behav Res. 2018 Jul-Aug; 53(4):574-593. PMID: 29757002.
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    41. Pustejovsky JE. Using response ratios for meta-analyzing single-case designs with behavioral outcomes. J Sch Psychol. 2018 06; 68:99-112. PMID: 29861034.
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    42. Zimmerman KN, Pustejovsky JE, Ledford JR, Barton EE, Severini KE, Lloyd BP. Single-case synthesis tools II: Comparing quantitative outcome measures. Res Dev Disabil. 2018 Aug; 79:65-76. PMID: 29525057.
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    43. Zimmerman KN, Ledford JR, Severini KE, Pustejovsky JE, Barton EE, Lloyd BP. Single-case synthesis tools I: Comparing tools to evaluate SCD quality and rigor. Res Dev Disabil. 2018 Aug; 79:19-32. PMID: 29510882.
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    44. Salsman JM, Pustejovsky JE, Park CL, Sherman AC, Merluzzi TV, Danhauer SC, Jim HS, Fitchett G. Reply to the association between religion/spirituality and mental health in cancer. Cancer. 2016 08 01; 122(15):2441-2. PMID: 27197776.
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    45. Salsman JM, Pustejovsky JE, Jim HS, Munoz AR, Merluzzi TV, George L, Park CL, Danhauer SC, Sherman AC, Snyder MA, Fitchett G. A meta-analytic approach to examining the correlation between religion/spirituality and mental health in cancer. Cancer. 2015 Nov 01; 121(21):3769-78. PMID: 26258536.
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    46. Jim HS, Pustejovsky JE, Park CL, Danhauer SC, Sherman AC, Fitchett G, Merluzzi TV, Munoz AR, George L, Snyder MA, Salsman JM. Religion, spirituality, and physical health in cancer patients: A meta-analysis. Cancer. 2015 Nov 01; 121(21):3760-8. PMID: 26258868.
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    47. Sherman AC, Merluzzi TV, Pustejovsky JE, Park CL, George L, Fitchett G, Jim HS, Munoz AR, Danhauer SC, Snyder MA, Salsman JM. A meta-analytic review of religious or spiritual involvement and social health among cancer patients. Cancer. 2015 Nov 01; 121(21):3779-88. PMID: 26258730.
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    48. Pustejovsky JE, Swan DM. Four Methods for Analyzing Partial Interval Recording Data, with Application to Single-Case Research. Multivariate Behav Res. 2015; 50(3):365-80. PMID: 26610035.
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    49. Pustejovsky JE. Measurement-comparable effect sizes for single-case studies of free-operant behavior. Psychol Methods. 2015 Sep; 20(3):342-59. PMID: 24773357.
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    50. Styler WF, Bethard S, Finan S, Palmer M, Pradhan S, de Groen PC, Erickson B, Miller T, Lin C, Savova G, Pustejovsky J. Temporal Annotation in the Clinical Domain. Trans Assoc Comput Linguist. 2014 Apr; 2:143-154. PMID: 29082229.
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    51. Shadish WR, Hedges LV, Pustejovsky JE. Analysis and meta-analysis of single-case designs with a standardized mean difference statistic: a primer and applications. J Sch Psychol. 2014 Apr; 52(2):123-47. PMID: 24606972.
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    52. Pustejovsky JE. Converting from d to r to z when the design uses extreme groups, dichotomization, or experimental control. Psychol Methods. 2014 Mar; 19(1):92-112. PMID: 24079923.
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    53. Hedges LV, Pustejovsky JE, Shadish WR. A standardized mean difference effect size for multiple baseline designs across individuals. Res Synth Methods. 2013 Dec; 4(4):324-41. PMID: 26053946.
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    54. Shadish WR, Hedges LV, Pustejovsky JE, Boyajian JG, Sullivan KJ, Andrade A, Barrientos JL. A d-statistic for single-case designs that is equivalent to the usual between-groups d-statistic. Neuropsychol Rehabil. 2014; 24(3-4):528-53. PMID: 23862576.
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    55. Hedges LV, Pustejovsky JE, Shadish WR. A standardized mean difference effect size for single case designs. Res Synth Methods. 2012 Sep; 3(3):224-39. PMID: 26062165.
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    56. Taylor RC, Sanfilippo A, McDermott JE, Baddeley B, Riensche R, Jensen R, Verhagen M, Pustejovsky J. Enriching regulatory networks by bootstrap learning using optimised GO-based gene similarity and gene links mined from PubMed abstracts. Int J Comput Biol Drug Des. 2011; 4(1):56-82. PMID: 21330694.
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    57. Wren JD, Chang JT, Pustejovsky J, Adar E, Garner HR, Altman RB. Biomedical term mapping databases. Nucleic Acids Res. 2005 Jan 01; 33(Database issue):D289-93. PMID: 15608198.
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