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Connection

Debashis Ghosh to Computer Simulation

This is a "connection" page, showing publications Debashis Ghosh has written about Computer Simulation.

 
Connection Strength
 
 
 
2.479
 
  1. Poisson LM, Sreekumar A, Chinnaiyan AM, Ghosh D. Pathway-directed weighted testing procedures for the integrative analysis of gene expression and metabolomic data. Genomics. 2012 May; 99(5):265-74.
    View in: PubMed
    Score: 0.309
  2. Carpenter CM, Gillenwater L, Bowler R, Kechris K, Ghosh D. TreeKernel: interpretable kernel machine tests for interactions between -omics and clinical predictors with applications to metabolomics and COPD phenotypes. BMC Bioinformatics. 2023 Oct 25; 24(1):398.
    View in: PubMed
    Score: 0.172
  3. Seal S, Bitler BG, Ghosh D. SMASH: Scalable Method for Analyzing Spatial Heterogeneity of genes in spatial transcriptomics data. PLoS Genet. 2023 Oct; 19(10):e1010983.
    View in: PubMed
    Score: 0.172
  4. Seal S, Ghosh D. MIAMI: mutual information-based analysis of multiplex imaging data. Bioinformatics. 2022 08 02; 38(15):3818-3826.
    View in: PubMed
    Score: 0.158
  5. Jensen AM, Tregellas JR, Sutton B, Xing F, Ghosh D. Kernel machine tests of association between brain networks and phenotypes. PLoS One. 2019; 14(3):e0199340.
    View in: PubMed
    Score: 0.125
  6. Rudra P, Broadaway KA, Ware EB, Jhun MA, Bielak LF, Zhao W, Smith JA, Peyser PA, Kardia SLR, Epstein MP, Ghosh D. Testing cross-phenotype effects of rare variants in longitudinal studies of complex traits. Genet Epidemiol. 2018 06; 42(4):320-332.
    View in: PubMed
    Score: 0.117
  7. Cho Y, Hu C, Ghosh D. Covariate adjustment using propensity scores for dependent censoring problems in the accelerated failure time model. Stat Med. 2018 02 10; 37(3):390-404.
    View in: PubMed
    Score: 0.113
  8. Hua WY, Ghosh D. Equivalence of kernel machine regression and kernel distance covariance for multidimensional phenotype association studies. Biometrics. 2015 Sep; 71(3):812-20.
    View in: PubMed
    Score: 0.096
  9. Cho Y, Ghosh D. Weighted estimation of the accelerated failure time model in the presence of dependent censoring. PLoS One. 2015; 10(4):e0124381.
    View in: PubMed
    Score: 0.096
  10. Zhan X, Patterson AD, Ghosh D. Kernel approaches for differential expression analysis of mass spectrometry-based metabolomics data. BMC Bioinformatics. 2015 Mar 11; 16:77.
    View in: PubMed
    Score: 0.095
  11. Ghosh D, Zhu Y, Coffman DL. Penalized regression procedures for variable selection in the potential outcomes framework. Stat Med. 2015 May 10; 34(10):1645-58.
    View in: PubMed
    Score: 0.094
  12. Ghosh D. Genomic outlier detection in high-throughput data analysis. Methods Mol Biol. 2013; 972:141-53.
    View in: PubMed
    Score: 0.081
  13. Poisson LM, Taylor JM, Ghosh D. Integrative set enrichment testing for multiple omics platforms. BMC Bioinformatics. 2011 Nov 25; 12:459.
    View in: PubMed
    Score: 0.075
  14. Ghosh D, Taylor JM, Sargent DJ. Meta-analysis for surrogacy: accelerated failure time models and semicompeting risks modeling. Biometrics. 2012 Mar; 68(1):226-32.
    View in: PubMed
    Score: 0.073
  15. Ghosh D. Discrete nonparametric algorithms for outlier detection with genomic data. J Biopharm Stat. 2010 Mar; 20(2):193-208.
    View in: PubMed
    Score: 0.067
  16. Ghosh D. Semiparametric analysis of recurrent events: artificial censoring, truncation, pairwise estimation and inference. Lifetime Data Anal. 2010 Oct; 16(4):509-24.
    View in: PubMed
    Score: 0.066
  17. Ghosh D. On assessing surrogacy in a single trial setting using a semicompeting risks paradigm. Biometrics. 2009 Jun; 65(2):521-9.
    View in: PubMed
    Score: 0.064
  18. Yuan Z, Ghosh D. Combining multiple biomarker models in logistic regression. Biometrics. 2008 Jun; 64(2):431-9.
    View in: PubMed
    Score: 0.058
  19. Liu D, Lin X, Ghosh D. Semiparametric regression of multidimensional genetic pathway data: least-squares kernel machines and linear mixed models. Biometrics. 2007 Dec; 63(4):1079-88.
    View in: PubMed
    Score: 0.057
  20. Ghosh D. Semiparametric inference for surrogate endpoints with bivariate censored data. Biometrics. 2008 Mar; 64(1):149-56.
    View in: PubMed
    Score: 0.056
  21. Ghosh D. Proportional hazards regression for cancer studies. Biometrics. 2008 Mar; 64(1):141-8.
    View in: PubMed
    Score: 0.055
  22. Ghosh D. Semi-parametric inferences for association with semi-competing risks data. Stat Med. 2006 Jun 30; 25(12):2059-70.
    View in: PubMed
    Score: 0.052
  23. Ghosh D, Lin DY. Semiparametric analysis of recurrent events data in the presence of dependent censoring. Biometrics. 2003 Dec; 59(4):877-85.
    View in: PubMed
    Score: 0.043
  24. Solis-Lemus CR, Fischer ST, Todor A, Liu C, Leslie EJ, Cutler DJ, Ghosh D, Epstein MP. Leveraging Family History in Case-Control Analyses of Rare Variation. Genetics. 2020 02; 214(2):295-303.
    View in: PubMed
    Score: 0.033
  25. Holleman AM, Broadaway KA, Duncan R, Todor A, Almli LM, Bradley B, Ressler KJ, Ghosh D, Mulle JG, Epstein MP. Powerful and Efficient Strategies for Genetic Association Testing of Symptom and Questionnaire Data in Psychiatric Genetic Studies. Sci Rep. 2019 05 17; 9(1):7523.
    View in: PubMed
    Score: 0.032
  26. Ge T, Nichols TE, Ghosh D, Mormino EC, Smoller JW, Sabuncu MR. A kernel machine method for detecting effects of interaction between multidimensional variable sets: an imaging genetics application. Neuroimage. 2015 Apr 01; 109:505-514.
    View in: PubMed
    Score: 0.023
  27. Chen W, Ghosh D, Raghunathan TE, Norkin M, Sargent DJ, Bepler G. On Bayesian methods of exploring qualitative interactions for targeted treatment. Stat Med. 2012 Dec 10; 31(28):3693-707.
    View in: PubMed
    Score: 0.020
  28. Kwee LC, Liu D, Lin X, Ghosh D, Epstein MP. A powerful and flexible multilocus association test for quantitative traits. Am J Hum Genet. 2008 Feb; 82(2):386-97.
    View in: PubMed
    Score: 0.014
  29. Shen R, Ghosh D, Chinnaiyan A, Meng Z. Eigengene-based linear discriminant model for tumor classification using gene expression microarray data. Bioinformatics. 2006 Nov 01; 22(21):2635-42.
    View in: PubMed
    Score: 0.013
  30. Rhodes DR, Tomlins SA, Varambally S, Mahavisno V, Barrette T, Kalyana-Sundaram S, Ghosh D, Pandey A, Chinnaiyan AM. Probabilistic model of the human protein-protein interaction network. Nat Biotechnol. 2005 Aug; 23(8):951-9.
    View in: PubMed
    Score: 0.012
  31. Abecasis GR, Ghosh D, Nichols TE. Linkage disequilibrium: ancient history drives the new genetics. Hum Hered. 2005; 59(2):118-24.
    View in: PubMed
    Score: 0.012
  32. Levin AM, Ghosh D, Cho KR, Kardia SL. A model-based scan statistic for identifying extreme chromosomal regions of gene expression in human tumors. Bioinformatics. 2005 Jun 15; 21(12):2867-74.
    View in: PubMed
    Score: 0.012
  33. Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S. Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data. BMC Bioinformatics. 2005 Feb 10; 6:26.
    View in: PubMed
    Score: 0.012
Connection Strength

The connection strength for concepts is the sum of the scores for each matching publication.

Publication scores are based on many factors, including how long ago they were written and whether the person is a first or senior author.

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