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Dmitriy Dligach

TitleAffiliate
InstitutionUniversity of Colorado Boulder
DepartmentCognitive Sci Institute-Admin

    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Afshar M, Sharma B, Dligach D, Oguss M, Brown R, Chhabra N, Thompson HM, Markossian T, Joyce C, Churpek MM, Karnik NS. Development and multimodal validation of a substance misuse algorithm for referral to treatment using artificial intelligence (SMART-AI): a retrospective deep learning study. Lancet Digit Health. 2022 06; 4(6):e426-e435. PMID: 35623797.
      View in: PubMed
    2. Caskey J, McConnell IL, Oguss M, Dligach D, Kulikoff R, Grogan B, Gibson C, Wimmer E, DeSalvo TE, Nyakoe-Nyasani EE, Churpek MM, Afshar M. Correction: Identifying COVID-19 Outbreaks From Contact-Tracing Interview Forms for Public Health Departments: Development of a Natural Language Processing Pipeline. JMIR Public Health Surveill. 2022 Mar 24; 8(3):e37893. PMID: 35324453.
      View in: PubMed
    3. Caskey J, McConnell IL, Oguss M, Dligach D, Kulikoff R, Grogan B, Gibson C, Wimmer E, DeSalvo TE, Nyakoe-Nyasani EE, Churpek MM, Afshar M. Identifying COVID-19 Outbreaks From Contact-Tracing Interview Forms for Public Health Departments: Development of a Natural Language Processing Pipeline. JMIR Public Health Surveill. 2022 03 08; 8(3):e36119. PMID: 35144241.
      View in: PubMed
    4. Zhang J, Can A, Lai PMR, Mukundan S, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Geometric Features Associated with Middle Cerebral Artery Bifurcation Aneurysm Formation: A Matched Case-Control Study. J Stroke Cerebrovasc Dis. 2022 Mar; 31(3):106268. PMID: 34974241.
      View in: PubMed
    5. Thompson HM, Sharma B, Bhalla S, Boley R, McCluskey C, Dligach D, Churpek MM, Karnik NS, Afshar M. Bias and fairness assessment of a natural language processing opioid misuse classifier: detection and mitigation of electronic health record data disadvantages across racial subgroups. J Am Med Inform Assoc. 2021 10 12; 28(11):2393-2403. PMID: 34383925.
      View in: PubMed
    6. Afshar M, Sharma B, Bhalla S, Thompson HM, Dligach D, Boley RA, Kishen E, Simmons A, Perticone K, Karnik NS. External validation of an opioid misuse machine learning classifier in hospitalized adult patients. Addict Sci Clin Pract. 2021 03 17; 16(1):19. PMID: 33731210.
      View in: PubMed
    7. Kulshrestha S, Dligach D, Joyce C, Gonzalez R, O'Rourke AP, Glazer JM, Stey A, Kruser JM, Churpek MM, Afshar M. Comparison and interpretability of machine learning models to predict severity of chest injury. JAMIA Open. 2021 Jan; 4(1):ooab015. PMID: 33709067.
      View in: PubMed
    8. Zhang J, Lai PMR, Can A, Mukundan S, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Tobacco use and age are associated with different morphologic features of anterior communicating artery aneurysms. Sci Rep. 2021 02 26; 11(1):4791. PMID: 33637879.
      View in: PubMed
    9. Zhang J, Can A, Lai PMR, Mukundan S, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Morphological variables associated with ruptured basilar tip aneurysms. Sci Rep. 2021 01 28; 11(1):2526. PMID: 33510194.
      View in: PubMed
    10. Zhang J, Can A, Lai PMR, Mukundan S, Castro VM, Dligach D, Finan S, Gainer V, Shadick N, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Geometric variations associated with posterior communicating artery aneurysms. J Neurointerv Surg. 2021 Nov; 13(11):1049-1052. PMID: 33479035.
      View in: PubMed
    11. Zhang J, Can A, Lai PMR, Mukundan S, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Vascular Geometry Associated with Anterior Communicating Artery Aneurysm Formation. World Neurosurg. 2021 02; 146:e1318-e1325. PMID: 33307259.
      View in: PubMed
    12. Dligach D, Afshar M, Miller T. Pre-training phenotyping classifiers. J Biomed Inform. 2021 01; 113:103626. PMID: 33259943.
      View in: PubMed
    13. Kulshrestha S, Dligach D, Joyce C, Baker MS, Gonzalez R, O'Rourke AP, Glazer JM, Stey A, Kruser JM, Churpek MM, Afshar M. Prediction of severe chest injury using natural language processing from the electronic health record. Injury. 2021 Feb; 52(2):205-212. PMID: 33131794.
      View in: PubMed
    14. Zhang J, Can A, Lai PMR, Mukundan S, Castro VM, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Surrounding vascular geometry associated with basilar tip aneurysm formation. Sci Rep. 2020 10 21; 10(1):17928. PMID: 33087795.
      View in: PubMed
    15. Mayampurath A, Churpek MM, Su X, Shah S, Munroe E, Patel B, Dligach D, Afshar M. External Validation of an Acute Respiratory Distress Syndrome Prediction Model Using Radiology Reports. Crit Care Med. 2020 09; 48(9):e791-e798. PMID: 32590389.
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    16. Zhang J, Can A, Lai PMR, Mukundan S, Castro VM, Dligach D, Finan S, Yu S, Gainer VS, Shadick NA, Savova G, Murphy SN, Cai T, Weiss ST, Du R. Age and morphology of posterior communicating artery aneurysms. Sci Rep. 2020 07 14; 10(1):11545. PMID: 32665589.
      View in: PubMed
    17. Sharma B, Dligach D, Swope K, Salisbury-Afshar E, Karnik NS, Joyce C, Afshar M. Publicly available machine learning models for identifying opioid misuse from the clinical notes of hospitalized patients. BMC Med Inform Decis Mak. 2020 04 29; 20(1):79. PMID: 32349766.
      View in: PubMed
    18. Lin C, Bethard S, Dligach D, Sadeque F, Savova G, Miller TA. Does BERT need domain adaptation for clinical negation detection? J Am Med Inform Assoc. 2020 04 01; 27(4):584-591. PMID: 32044989.
      View in: PubMed
    19. Dligach D, Afshar M, Miller T. Toward a clinical text encoder: pretraining for clinical natural language processing with applications to substance misuse. J Am Med Inform Assoc. 2019 11 01; 26(11):1272-1278. PMID: 31233140.
      View in: PubMed
    20. Afshar M, Dligach D, Sharma B, Cai X, Boyda J, Birch S, Valdez D, Zelisko S, Joyce C, Modave F, Price R. Development and application of a high throughput natural language processing architecture to convert all clinical documents in a clinical data warehouse into standardized medical vocabularies. J Am Med Inform Assoc. 2019 11 01; 26(11):1364-1369. PMID: 31145455.
      View in: PubMed
    21. To D, Sharma B, Karnik N, Joyce C, Dligach D, Afshar M. Validation of an alcohol misuse classifier in hospitalized patients. Alcohol. 2020 05; 84:49-55. PMID: 31574300.
      View in: PubMed
    22. Liu D, Dligach D, Miller T. Two-stage Federated Phenotyping and Patient Representation Learning. Proc Conf Assoc Comput Linguist Meet. 2019 Aug; 2019:283-291. PMID: 33907350.
      View in: PubMed
    23. Afshar M, Joyce C, Dligach D, Sharma B, Kania R, Xie M, Swope K, Salisbury-Afshar E, Karnik NS. Subtypes in patients with opioid misuse: A prognostic enrichment strategy using electronic health record data in hospitalized patients. PLoS One. 2019; 14(7):e0219717. PMID: 31310611.
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    24. Zhang J, Can A, Mukundan S, Steigner M, Castro VM, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Wang Z, Weiss ST, Du R. Morphological Variables Associated With Ruptured Middle Cerebral Artery Aneurysms. Neurosurgery. 2019 07 01; 85(1):75-83. PMID: 29850834.
      View in: PubMed
    25. Miller T, Geva A, Dligach D. Extracting Adverse Drug Event Information with Minimal Engineering. Proc Conf. 2019 Jun; 2019:22-27. PMID: 34027520.
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    26. Can A, Lai PMR, Castro VM, Yu S, Dligach D, Finan S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Decreased Total Iron Binding Capacity May Correlate with Ruptured Intracranial Aneurysms. Sci Rep. 2019 04 15; 9(1):6054. PMID: 30988354.
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    27. Afshar M, Phillips A, Karnik N, Mueller J, To D, Gonzalez R, Price R, Cooper R, Joyce C, Dligach D. Natural language processing and machine learning to identify alcohol misuse from the electronic health record in trauma patients: development and internal validation. J Am Med Inform Assoc. 2019 03 01; 26(3):254-261. PMID: 30602031.
      View in: PubMed
    28. Afshar M, Joyce C, Oakey A, Formanek P, Yang P, Churpek MM, Cooper RS, Zelisko S, Price R, Dligach D. A Computable Phenotype for Acute Respiratory Distress Syndrome Using Natural Language Processing and Machine Learning. AMIA Annu Symp Proc. 2018; 2018:157-165. PMID: 30815053.
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    29. Can A, Castro VM, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Elevated International Normalized Ratio Is Associated With Ruptured Aneurysms. Stroke. 2018 09; 49(9):2046-2052. PMID: 30354989.
      View in: PubMed
    30. Can A, Rudy RF, Castro VM, Yu S, Dligach D, Finan S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Association between aspirin dose and subarachnoid hemorrhage from saccular aneurysms: A case-control study. Neurology. 2018 09 18; 91(12):e1175-e1181. PMID: 30135253.
      View in: PubMed
    31. Can A, Rudy RF, Castro VM, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Low Serum Calcium and Magnesium Levels and Rupture of Intracranial Aneurysms. Stroke. 2018 07; 49(7):1747-1750. PMID: 29844027.
      View in: PubMed
    32. Can A, Castro VM, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Lipid-Lowering Agents and High HDL (High-Density Lipoprotein) Are Inversely Associated With Intracranial Aneurysm Rupture. Stroke. 2018 05; 49(5):1148-1154. PMID: 29622625.
      View in: PubMed
    33. Can A, Castro VM, Yu S, Dligach D, Finan S, Gainer VS, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Antihyperglycemic Agents Are Inversely Associated With Intracranial Aneurysm Rupture. Stroke. 2018 01; 49(1):34-39. PMID: 29203688.
      View in: PubMed
    34. Can A, Castro VM, Ozdemir YH, Dagen S, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Heroin Use Is Associated with Ruptured Saccular Aneurysms. Transl Stroke Res. 2018 08; 9(4):340-346. PMID: 29103103.
      View in: PubMed
    35. Can A, Castro VM, Ozdemir YH, Dagen S, Yu S, Dligach D, Finan S, Gainer V, Shadick NA, Murphy S, Cai T, Savova G, Dammers R, Weiss ST, Du R. Association of intracranial aneurysm rupture with smoking duration, intensity, and cessation. Neurology. 2017 Sep 26; 89(13):1408-1415. PMID: 28855408.
      View in: PubMed
    36. Can A, Castro VM, Ozdemir YH, Dagen S, Dligach D, Finan S, Yu S, Gainer V, Shadick NA, Savova G, Murphy S, Cai T, Weiss ST, Du R. Alcohol Consumption and Aneurysmal Subarachnoid Hemorrhage. Transl Stroke Res. 2018 02; 9(1):13-19. PMID: 28752411.
      View in: PubMed
    37. Miller T, Dligach D, Bethard S, Lin C, Savova G. Towards generalizable entity-centric clinical coreference resolution. J Biomed Inform. 2017 05; 69:251-258. PMID: 28438706.
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    38. Castro VM, Dligach D, Finan S, Yu S, Can A, Abd-El-Barr M, Gainer V, Shadick NA, Murphy S, Cai T, Savova G, Weiss ST, Du R. Large-scale identification of patients with cerebral aneurysms using natural language processing. Neurology. 2017 Jan 10; 88(2):164-168. PMID: 27927935.
      View in: PubMed
    39. Dligach D, Miller T, Savova GK. Semi-supervised Learning for Phenotyping Tasks. AMIA Annu Symp Proc. 2015; 2015:502-11. PMID: 26958183.
      View in: PubMed
    40. Lin C, Dligach D, Miller TA, Bethard S, Savova GK. Multilayered temporal modeling for the clinical domain. J Am Med Inform Assoc. 2016 Mar; 23(2):387-95. PMID: 26521301.
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    41. Lin C, Karlson EW, Dligach D, Ramirez MP, Miller TA, Mo H, Braggs NS, Cagan A, Gainer V, Denny JC, Savova GK. Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. J Am Med Inform Assoc. 2015 Apr; 22(e1):e151-61. PMID: 25344930.
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    42. Pathak J, Bailey KR, Beebe CE, Bethard S, Carrell DC, Chen PJ, Dligach D, Endle CM, Hart LA, Haug PJ, Huff SM, Kaggal VC, Li D, Liu H, Marchant K, Masanz J, Miller T, Oniki TA, Palmer M, Peterson KJ, Rea S, Savova GK, Stancl CR, Sohn S, Solbrig HR, Suesse DB, Tao C, Taylor DP, Westberg L, Wu S, Zhuo N, Chute CG. Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium. J Am Med Inform Assoc. 2013 Dec; 20(e2):e341-8. PMID: 24190931.
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    43. Dligach D, Bethard S, Becker L, Miller T, Savova GK. Discovering body site and severity modifiers in clinical texts. J Am Med Inform Assoc. 2014 May-Jun; 21(3):448-54. PMID: 24091648.
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    44. Lin C, Karlson EW, Canhao H, Miller TA, Dligach D, Chen PJ, Perez RN, Shen Y, Weinblatt ME, Shadick NA, Plenge RM, Savova GK. Automatic prediction of rheumatoid arthritis disease activity from the electronic medical records. PLoS One. 2013; 8(8):e69932. PMID: 23976944.
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    45. Albright D, Lanfranchi A, Fredriksen A, Styler WF, Warner C, Hwang JD, Choi JD, Dligach D, Nielsen RD, Martin J, Ward W, Palmer M, Savova GK. Towards comprehensive syntactic and semantic annotations of the clinical narrative. J Am Med Inform Assoc. 2013 Sep-Oct; 20(5):922-30. PMID: 23355458.
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    46. Wu ST, Kaggal VC, Dligach D, Masanz JJ, Chen P, Becker L, Chapman WW, Savova GK, Liu H, Chute CG. A common type system for clinical natural language processing. J Biomed Semantics. 2013 Jan 03; 4(1):1. PMID: 23286462.
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