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Zachary Lawrence Maas

TitleAffiliate
InstitutionUniversity of Colorado Boulder
DepartmentBiofrontiers Institute

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Sigauke RF, Sanford L, Maas ZL, Jones T, Stanley JT, Townsend HA, Allen MA, Dowell RD. Atlas of nascent RNA transcripts reveals tissue-specific enhancer to gene linkages. BMC Genomics. 2025 Apr 25; 26(1):406. PMID: 40281430.
      View in: PubMed
    2. Jones T, Feng J, Luyties O, Cozzolino K, Sanford L, Rimel JK, Ebmeier CC, Shelby GS, Watts LP, Rodino J, Rajagopal N, Hu S, Brennan F, Maas ZL, Alnemy S, Richter WF, Koh AF, Cronin NB, Madduri A, Das J, Cooper E, Hamman KB, Carulli JP, Allen MA, Spencer S, Kotecha A, Marineau JJ, Greber BJ, Dowell RD, Taatjes DJ. TFIIH kinase CDK7 drives cell proliferation through a common core transcription factor network. Sci Adv. 2025 Feb 28; 11(9):eadr9660. PMID: 40020069.
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    3. Huffine CA, Maas ZL, Avramov A, Brininger CM, Cameron JC, Tay JW. Machine learning models for segmentation and classification of cyanobacterial cells. Photosynth Res. 2025 Feb 08; 163(1):16. PMID: 39921756.
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    4. Huffine CA, Maas ZL, Avramov A, Brininger C, Cameron JC, Tay JW. Machine Learning Models for Segmentation and Classification of Cyanobacterial Cells. bioRxiv. 2024 Dec 12. PMID: 39713310.
      View in: PubMed
    5. Maas ZL, Dowell RD. Internal and external normalization of nascent RNA sequencing run-on experiments. BMC Bioinformatics. 2024 Jan 12; 25(1):19. PMID: 38216877.
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    6. Maas Z, Sigauke R, Dowell R. Deconvolution of Nascent Sequencing Data Using Transcriptional Regulatory Elements. Pac Symp Biocomput. 2024; 29:564-578. PMID: 38160307.
      View in: PubMed
    7. Sigauke RF, Sanford L, Maas ZL, Jones T, Stanley JT, Townsend HA, Allen MA, Dowell RD. Atlas of nascent RNA transcripts reveals enhancer to gene linkages. bioRxiv. 2023 Dec 08. PMID: 38105978.
      View in: PubMed
    8. Rubin JD, Stanley JT, Sigauke RF, Levandowski CB, Maas ZL, Westfall J, Taatjes DJ, Dowell RD. Transcription factor enrichment analysis (TFEA) quantifies the activity of multiple transcription factors from a single experiment. Commun Biol. 2021 06 02; 4(1):661. PMID: 34079046.
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    9. Rimel JK, Poss ZC, Erickson B, Maas ZL, Ebmeier CC, Johnson JL, Decker TM, Yaron TM, Bradley MJ, Hamman KB, Hu S, Malojcic G, Marineau JJ, White PW, Brault M, Tao L, DeRoy P, Clavette C, Nayak S, Damon LJ, Kaltheuner IH, Bunch H, Cantley LC, Geyer M, Iwasa J, Dowell RD, Bentley DL, Old WM, Taatjes DJ. Selective inhibition of CDK7 reveals high-confidence targets and new models for TFIIH function in transcription. Genes Dev. 2020 11 01; 34(21-22):1452-1473. PMID: 33060135.
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    10. Fant CB, Levandowski CB, Gupta K, Maas ZL, Moir J, Rubin JD, Sawyer A, Esbin MN, Rimel JK, Luyties O, Marr MT, Berger I, Dowell RD, Taatjes DJ. TFIID Enables RNA Polymerase II Promoter-Proximal Pausing. Mol Cell. 2020 05 21; 78(4):785-793.e8. PMID: 32229306.
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