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Nolan Coburn Kane

TitleAsst Professor
InstitutionUniversity of Colorado Boulder
DepartmentEcology & Evolutionary Biology
Phone3034923726
ORCID ORCID Icon0000-0001-9133-6543 Additional info

    Collapse Bibliographic 
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Pogoda CS, Keepers KG, Lendemer JC, Kane NC, Tripp EA. Reductions in complexity of mitochondrial genomes in lichen-forming fungi shed light on genome architecture of obligate symbioses. Mol Ecol. 2018 Mar; 27(5):1155-1169. PMID: 29417658.
      View in: PubMed
    2. Pogoda CS, Keepers KG, Hamsher SE, Stepanek JG, Kane NC, Kociolek JP. Comparative analysis of the mitochondrial genomes of six newly sequenced diatoms reveals group II introns in the barcoding region of cox1. Mitochondrial DNA A DNA Mapp Seq Anal. 2018 Mar 11; 1-9. PMID: 29527965.
      View in: PubMed
    3. Pisupati R, Vergara D, Kane NC. Diversity and evolution of the repetitive genomic content in Cannabis sativa. BMC Genomics. 2018 02 21; 19(1):156. PMID: 29466945.
      View in: PubMed
    4. Gao QM, Kane NC, Hulke BS, Reinert S, Pogoda CS, Tittes S, Prasifka JR. Genetic Architecture of Capitate Glandular Trichome Density in Florets of Domesticated Sunflower (Helianthus annuus L.). Front Plant Sci. 2017; 8:2227. PMID: 29375602.
      View in: PubMed
    5. Semenov GA, Scordato ESC, Khaydarov DR, Smith CCR, Kane NC, Safran RJ. Effects of assortative mate choice on the genomic and morphological structure of a hybrid zone between two bird subspecies. Mol Ecol. 2017 Nov; 26(22):6430-6444. PMID: 28987006.
      View in: PubMed
    6. Scordato ESC, Wilkins MR, Semenov G, Rubtsov AS, Kane NC, Safran RJ. Genomic variation across two barn swallow hybrid zones reveals traits associated with divergence in sympatry and allopatry. Mol Ecol. 2017 Oct; 26(20):5676-5691. PMID: 28777875.
      View in: PubMed
    7. Badouin H, Gouzy J, Grassa CJ, Murat F, Staton SE, Cottret L, Lelandais-Brière C, Owens GL, Carrère S, Mayjonade B, Legrand L, Gill N, Kane NC, Bowers JE, Hubner S, Bellec A, Bérard A, Bergès H, Blanchet N, Boniface MC, Brunel D, Catrice O, Chaidir N, Claudel C, Donnadieu C, Faraut T, Fievet G, Helmstetter N, King M, Knapp SJ, Lai Z, Le Paslier MC, Lippi Y, Lorenzon L, Mandel JR, Marage G, Marchand G, Marquand E, Bret-Mestries E, Morien E, Nambeesan S, Nguyen T, Pegot-Espagnet P, Pouilly N, Raftis F, Sallet E, Schiex T, Thomas J, Vandecasteele C, Varès D, Vear F, Vautrin S, Crespi M, Mangin B, Burke JM, Salse J, Muños S, Vincourt P, Rieseberg LH, Langlade NB. The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature. 2017 06 01; 546(7656):148-152. PMID: 28538728.
      View in: PubMed
    8. Vergara D, Bidwell LC, Gaudino R, Torres A, Du G, Ruthenburg TC, deCesare K, Land DP, Hutchison KE, Kane NC. Compromised External Validity: Federally Produced Cannabis Does Not Reflect Legal Markets. Sci Rep. 2017 Apr 19; 7:46528. PMID: 28422145.
      View in: PubMed
    9. Leff JW, Lynch RC, Kane NC, Fierer N. Plant domestication and the assembly of bacterial and fungal communities associated with strains of the common sunflower, Helianthus annuus. New Phytol. 2017 Apr; 214(1):412-423. PMID: 27879004.
      View in: PubMed
    10. Grassa CJ, Ebert DP, Kane NC, Rieseberg LH. Complete Mitochondrial Genome Sequence of Sunflower (Helianthus annuus L.). Genome Announc. 2016 Sep 15; 4(5). PMID: 27635002.
      View in: PubMed
    11. Safran RJ, Scordato ES, Wilkins MR, Hubbard JK, Jenkins BR, Albrecht T, Flaxman SM, Karaardiç H, Vortman Y, Lotem A, Nosil P, Pap P, Shen S, Chan SF, Parchman TL, Kane NC. Genome-wide differentiation in closely related populations: the roles of selection and geographic isolation. Mol Ecol. 2016 Aug; 25(16):3865-83. PMID: 27357267.
      View in: PubMed
    12. Franks SJ, Kane NC, O'Hara NB, Tittes S, Rest JS. Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools. Mol Ecol. 2016 08; 25(15):3622-31. PMID: 27072809.
      View in: PubMed
    13. Kantar MB, Sosa CC, Khoury CK, Castañeda-Álvarez NP, Achicanoy HA, Bernau V, Kane NC, Marek L, Seiler G, Rieseberg LH. Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.). Front Plant Sci. 2015; 6:841. PMID: 26500675; PMCID: PMC4597133.
    14. Vergara D, White KH, Keepers KG, Kane NC. The complete chloroplast genomes of Cannabis sativa and Humulus lupulus. Mitochondrial DNA A DNA Mapp Seq Anal. 2016 09; 27(5):3793-4. PMID: 26329384.
      View in: PubMed
    15. Keepers K, Martin AP, Kane NC. The complete mitochondrial genome of the Warm Springs pupfish, Cyprinodon nevadensis pectoralis. Mitochondrial DNA A DNA Mapp Seq Anal. 2016 07; 27(4):2349-50. PMID: 26061336.
      View in: PubMed
    16. Delmore KE, Hübner S, Kane NC, Schuster R, Andrew RL, Câmara F, Guigó R, Irwin DE. Genomic analysis of a migratory divide reveals candidate genes for migration and implicates selective sweeps in generating islands of differentiation. Mol Ecol. 2015 Apr; 24(8):1873-88. PMID: 25808860.
      View in: PubMed
    17. Whitney KD, Broman KW, Kane NC, Hovick SM, Randell RA, Rieseberg LH. Quantitative trait locus mapping identifies candidate alleles involved in adaptive introgression and range expansion in a wild sunflower. Mol Ecol. 2015 May; 24(9):2194-211. PMID: 25522096; PMCID: PMC4412771.
    18. Baute GJ, Kane NC, Grassa CJ, Lai Z, Rieseberg LH. Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives. New Phytol. 2015 Apr; 206(2):830-8. PMID: 25641359.
      View in: PubMed
    19. Lynch RC, Darcy JL, Kane NC, Nemergut DR, Schmidt SK. Metagenomic evidence for metabolism of trace atmospheric gases by high-elevation desert Actinobacteria. Front Microbiol. 2014; 5:698. PMID: 25566214; PMCID: PMC4269115.
    20. Tittes S, Kane NC. The genomics of adaptation, divergence and speciation: a congealing theory. Mol Ecol. 2014 Aug; 23(16):3938-40. PMID: 25088551.
      View in: PubMed
    21. Marchand G, Huynh-Thu VA, Kane NC, Arribat S, Varès D, Rengel D, Balzergue S, Rieseberg LH, Vincourt P, Geurts P, Vignes M, Langlade NB. Bridging physiological and evolutionary time-scales in a gene regulatory network. New Phytol. 2014 Jul; 203(2):685-96. PMID: 24786523.
      View in: PubMed
    22. Gill N, Buti M, Kane N, Bellec A, Helmstetter N, Berges H, Rieseberg LH. Sequence-Based Analysis of Structural Organization and Composition of the Cultivated Sunflower (Helianthus annuus L.) Genome. Biology (Basel). 2014 Apr 16; 3(2):295-319. PMID: 24833511; PMCID: PMC4085609.
    23. Rieseberg L, Vines T, Gow J, Kane N. Molecular Ecology continues to perform well according to the major publication metrics. Introduction. Mol Ecol. 2014 Jan; 23(1):1-15. PMID: 24372750.
      View in: PubMed
    24. Bock DG, Kane NC, Ebert DP, Rieseberg LH. Genome skimming reveals the origin of the Jerusalem Artichoke tuber crop species: neither from Jerusalem nor an artichoke. New Phytol. 2014 Feb; 201(3):1021-30. PMID: 24245977.
      View in: PubMed
    25. Natali L, Cossu RM, Barghini E, Giordani T, Buti M, Mascagni F, Morgante M, Gill N, Kane NC, Rieseberg L, Cavallini A. The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads. BMC Genomics. 2013 Oct 06; 14:686. PMID: 24093210; PMCID: PMC3852528.
    26. Hodgins KA, Lai Z, Oliveira LO, Still DW, Scascitelli M, Barker MS, Kane NC, Dempewolf H, Kozik A, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH. Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives. Mol Ecol Resour. 2014 Jan; 14(1):166-77. PMID: 24103297.
      View in: PubMed
    27. Sveinsson S, Gill N, Kane NC, Cronk Q. Transposon fingerprinting using low coverage whole genome shotgun sequencing in cacao (Theobroma cacao L.) and related species. BMC Genomics. 2013 Jul 24; 14:502. PMID: 23883295; PMCID: PMC3726317.
    28. Andrew RL, Bernatchez L, Bonin A, Buerkle CA, Carstens BC, Emerson BC, Garant D, Giraud T, Kane NC, Rogers SM, Slate J, Smith H, Sork VL, Stone GN, Vines TH, Waits L, Widmer A, Rieseberg LH. A road map for molecular ecology. Mol Ecol. 2013 May; 22(10):2605-26. PMID: 23611646.
      View in: PubMed
    29. Bell GD, Kane NC, Rieseberg LH, Adams KL. RNA-seq analysis of allele-specific expression, hybrid effects, and regulatory divergence in hybrids compared with their parents from natural populations. Genome Biol Evol. 2013; 5(7):1309-23. PMID: 23677938; PMCID: PMC3730339.
    30. Rieseberg L, Vines T, Kane N. Editorial 2013. Mol Ecol. 2013 Jan; 22(1):1-14. PMID: 23252575.
      View in: PubMed
    31. Renaut S, Grassa CJ, Yeaman S, Moyers BT, Lai Z, Kane NC, Bowers JE, Burke JM, Rieseberg LH. Genomic islands of divergence are not affected by geography of speciation in sunflowers. Nat Commun. 2013; 4:1827. PMID: 23652015.
      View in: PubMed
    32. Renaut S, Grassa CJ, Moyers BT, Kane NC, Rieseberg LH. The Population Genomics of Sunflowers and Genomic Determinants of Protein Evolution Revealed by RNAseq. Biology (Basel). 2012 Oct 25; 1(3):575-96. PMID: 24832509; PMCID: PMC4009819.
    33. Andrew RL, Kane NC, Baute GJ, Grassa CJ, Rieseberg LH. Recent nonhybrid origin of sunflower ecotypes in a novel habitat. Mol Ecol. 2013 Feb; 22(3):799-813. PMID: 23072494.
      View in: PubMed
    34. Kane NC, Burke JM, Marek L, Seiler G, Vear F, Baute G, Knapp SJ, Vincourt P, Rieseberg LH. Sunflower genetic, genomic and ecological resources. Mol Ecol Resour. 2013 Jan; 13(1):10-20. PMID: 23039950.
      View in: PubMed
    35. Gilbert KJ, Andrew RL, Bock DG, Franklin MT, Kane NC, Moore JS, Moyers BT, Renaut S, Rennison DJ, Veen T, Vines TH. Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program STRUCTURE. Mol Ecol. 2012 Oct; 21(20):4925-30. PMID: 22998190.
      View in: PubMed
    36. Staton SE, Bakken BH, Blackman BK, Chapman MA, Kane NC, Tang S, Ungerer MC, Knapp SJ, Rieseberg LH, Burke JM. The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements. Plant J. 2012 Oct; 72(1):142-53. PMID: 22691070.
      View in: PubMed
    37. Koziol L, Rieseberg LH, Kane N, Bever JD. Reduced drought tolerance during domestication and the evolution of weediness results from tolerance-growth trade-offs. Evolution. 2012 Dec; 66(12):3803-14. PMID: 23206138; PMCID: PMC3515206.
    38. Kane N, Sveinsson S, Dempewolf H, Yang JY, Zhang D, Engels JM, Cronk Q. Ultra-barcoding in cacao (Theobroma spp.; Malvaceae) using whole chloroplast genomes and nuclear ribosomal DNA. Am J Bot. 2012 Feb; 99(2):320-9. PMID: 22301895.
      View in: PubMed
    39. Lai Z, Zou Y, Kane NC, Choi JH, Wang X, Rieseberg LH. Preparation of normalized cDNA libraries for 454 Titanium transcriptome sequencing. Methods Mol Biol. 2012; 888:119-33. PMID: 22665279.
      View in: PubMed
    40. Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, Barker MS, Matvienko M, Yu Q, Turner KG, Pearl SA, Bell GD, Zou Y, Grassa C, Guggisberg A, Adams KL, Anderson JV, Horvath DP, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH. Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. Am J Bot. 2012 Feb; 99(2):209-18. PMID: 22058181.
      View in: PubMed
    41. Mayrose M, Kane NC, Mayrose I, Dlugosch KM, Rieseberg LH. Increased growth in sunflower correlates with reduced defences and altered gene expression in response to biotic and abiotic stress. Mol Ecol. 2011 Nov; 20(22):4683-94. PMID: 21988641.
      View in: PubMed
    42. Blackman BK, Scascitelli M, Kane NC, Luton HH, Rasmussen DA, Bye RA, Lentz DL, Rieseberg LH. Sunflower domestication alleles support single domestication center in eastern North America. Proc Natl Acad Sci U S A. 2011 Aug 23; 108(34):14360-5. PMID: 21844335; PMCID: PMC3161615.
    43. Kane NC, Barker MS, Zhan SH, Rieseberg LH. Molecular evolution across the Asteraceae: micro- and macroevolutionary processes. Mol Biol Evol. 2011 Dec; 28(12):3225-35. PMID: 21693439.
      View in: PubMed
    44. Dempewolf H, Kane NC, Ostevik KL, Geleta M, Barker MS, Lai Z, Stewart ML, Bekele E, Engels JM, Cronk QC, Rieseberg LH. Establishing genomic tools and resources for Guizotia abyssinica (L.f.) Cass.-the development of a library of expressed sequence tags, microsatellite loci, and the sequencing of its chloroplast genome. Mol Ecol Resour. 2010 Nov; 10(6):1048-58. PMID: 21565115.
      View in: PubMed
    45. Barker MS, Dlugosch KM, Dinh L, Challa RS, Kane NC, King MG, Rieseberg LH. EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics. Evol Bioinform Online. 2010 Oct 20; 6:143-9. PMID: 21079755; PMCID: PMC2978936.
    46. Strasburg JL, Kane NC, Raduski AR, Bonin A, Michelmore R, Rieseberg LH. Effective population size is positively correlated with levels of adaptive divergence among annual sunflowers. Mol Biol Evol. 2011 May; 28(5):1569-80. PMID: 20952500; PMCID: PMC3080132.
    47. Geraldes A, Kane NC. Pushing north one bottleneck at a time: site frequency spectra tell the history of Sitka spruce. Mol Ecol. 2010 Sep; 19(18):3837-9. PMID: 20854272.
      View in: PubMed
    48. Aurelle D, Baker AJ, Bottin L, Brouat C, Caccone A, Chaix A, Dhakal P, Ding Y, Duplantier JM, Fiedler W, Fietz J, Fong Y, Forcioli D, Freitas TR, Gunnarsson GH, Haddrath O, Hadziabdic D, Hauksdottir S, Havill NP, Heinrich M, Heinz T, Hjorleifsdottir S, Hong Y, Hreggvidsson GO, Huchette S, Hurst J, Kane M, Kane NC, Kawakami T, Ke W, Keith RA, Klauke N, Klein JL, Kun JF, Li C, Li GQ, Li JJ, Loiseau A, Lu LZ, Lucas M, Martins-Ferreira C, Mokhtar-Jamaï K, Olafsson K, Pampoulie C, Pan L, Pooler MR, Ren JD, Rinehart TA, Roussel V, Santos MO, Schaefer HM, Scheffler BE, Schmidt A, Segelbacher G, Shen JD, Skirnisdottir S, Sommer S, Tao ZR, Taubert R, Tian Y, Tomiuk J, Trigiano RN, Ungerer MC, Van Wormhoudt A, Wadl PA, Wang DQ, Weis-Dootz T, Xia Q, Yuan QY. Permanent Genetic Resources added to the Molecular Ecology Resources Database 1 February 2010-31 March 2010. Mol Ecol Resour. 2010 Jul; 10(4):751-4. PMID: 21565086.
      View in: PubMed
    49. Moyers BT, Kane NC. The genetics of adaptation to novel environments: selection on germination timing in Arabidopsis thaliana. Mol Ecol. 2010 Apr; 19(7):1270-2. PMID: 20456230.
      View in: PubMed
    50. Rieseberg L, Vines T, Kane N. Editorial and retrospective 2010. Mol Ecol. 2010 Jan; 19(1):1-22. PMID: 20078766.
      View in: PubMed
    51. Kane NC, King MG, Barker MS, Raduski A, Karrenberg S, Yatabe Y, Knapp SJ, Rieseberg LH. Comparative genomic and population genetic analyses indicate highly porous genomes and high levels of gene flow between divergent helianthus species. Evolution. 2009 Aug; 63(8):2061-75. PMID: 19473382; PMCID: PMC2731706.
    52. Hudson ME, Kane NC. Plant genomes do a balancing act. Mol Ecol. 2009 Jul; 18(13):2743-5. PMID: 19457202.
      View in: PubMed
    53. Kane NC, King MG. Using parentage analysis to examine gene flow and spatial genetic structure. Mol Ecol. 2009 Apr; 18(8):1551-2. PMID: 19243509.
      View in: PubMed
    54. Rieseberg L, Vines T, Kane N. Molecular Ecology. Editorial and retrospective 2008. Mol Ecol. 2009 Jan; 18(1):1-13. PMID: 19140960.
      View in: PubMed
    55. Kane NC, Cronk Q. Botany without borders: barcoding in focus. Mol Ecol. 2008 Dec; 17(24):5175-6. PMID: 19067801.
      View in: PubMed
    56. Barker MS, Kane NC, Matvienko M, Kozik A, Michelmore RW, Knapp SJ, Rieseberg LH. Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years. Mol Biol Evol. 2008 Nov; 25(11):2445-55. PMID: 18728074; PMCID: PMC2727391.
    57. Lai Z, Kane NC, Zou Y, Rieseberg LH. Natural variation in gene expression between wild and weedy populations of Helianthus annuus. Genetics. 2008 Aug; 179(4):1881-90. PMID: 18689879; PMCID: PMC2516066.
    58. Kane NC, Baack EJ. The origins of weedy rice. Mol Ecol. 2007 Nov; 16(21):4423-5. PMID: 17850268.
      View in: PubMed
    59. Kane NC, Rieseberg LH. Genetics and evolution of weedy Helianthus annuus populations: adaptation of an agricultural weed. Mol Ecol. 2008 Jan; 17(1):384-94. PMID: 17725567.
      View in: PubMed
    60. Ortiz-Barrientos D, Kane NC. Meeting review: American Genetics Association Symposium on the genetics of speciation. Mol Ecol. 2007 Jul; 16(14):2852-4. PMID: 17614901.
      View in: PubMed
    61. Yatabe Y, Kane NC, Scotti-Saintagne C, Rieseberg LH. Rampant gene exchange across a strong reproductive barrier between the annual sunflowers, Helianthus annuus and H. petiolaris. Genetics. 2007 Apr; 175(4):1883-93. PMID: 17277373; PMCID: PMC1855124.
    62. Kane NC, Rieseberg LH. Selective sweeps reveal candidate genes for adaptation to drought and salt tolerance in common sunflower, Helianthus annuus. Genetics. 2007 Apr; 175(4):1823-34. PMID: 17237516; PMCID: PMC1855101.
    63. Kane NC, Rieseberg LH. Maize genetics: the treasure of the Sierra Madre. Curr Biol. 2005 Feb 22; 15(4):R137-9. PMID: 15723786.
      View in: PubMed
    64. Weinig C, Gravuer KA, Kane NC, Schmitt J. Testing adaptive plasticity to UV: costs and benefits of stem elongation and light-induced phenolics. Evolution. 2004 Dec; 58(12):2645-56. PMID: 15696744.
      View in: PubMed
    65. Ludwig F, Rosenthal DM, Johnston JA, Kane N, Gross BL, Lexer C, Dudley SA, Rieseberg LH, Donovan LA. Selection on leaf ecophysiological traits in a desert hybrid Helianthus species and early-generation hybrids. Evolution. 2004 Dec; 58(12):2682-92. PMID: 15696747; PMCID: PMC2562700.
    66. Gross BL, Kane NC, Lexer C, Ludwig F, Rosenthal DM, Donovan LA, Rieseberg LH. Reconstructing the origin of Helianthus deserticola: survival and selection on the desert floor. Am Nat. 2004 Aug; 164(2):145-56. PMID: 15278840; PMCID: PMC2562696.
    67. Huber H, Kane NC, Heschel MS, von Wettberg EJ, Banta J, Leuck AM, Schmitt J. Frequency and microenvironmental pattern of selection on plastic shade-avoidance traits in a natural population of Impatiens capensis. Am Nat. 2004 Apr; 163(4):548-63. PMID: 15122502.
      View in: PubMed
    68. Weinig C, Dorn LA, Kane NC, German ZM, Halldorsdottir SS, Ungerer MC, Toyonaga Y, Mackay TF, Purugganan MD, Schmitt J. Heterogeneous selection at specific loci in natural environments in Arabidopsis thaliana. Genetics. 2003 Sep; 165(1):321-9. PMID: 14504239; PMCID: PMC1462755.
    69. Weinig C, Ungerer MC, Dorn LA, Kane NC, Toyonaga Y, Halldorsdottir SS, Mackay TF, Purugganan MD, Schmitt J. Novel loci control variation in reproductive timing in Arabidopsis thaliana in natural environments. Genetics. 2002 Dec; 162(4):1875-84. PMID: 12524356; PMCID: PMC1462365.
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