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William Anthony Baumgartner

TitleResearch Associate
InstitutionUniversity of Colorado Denver - Anschutz Medical Campus
DepartmentSOM - Pharmacology
Phone303/724-3369

    Collapse Research 
    Collapse research activities and funding
    R01HL041594     (BAUMGARTNER, WILLIAM ANTHONY)Dec 1, 1988 - Nov 30, 1992
    NIH/NHLBI
    METABOLIC ANALYSIS OF REJECTION IN HEART TRANSPLANTATION
    Role: Principal Investigator
    R01NS031238     (BAUMGARTNER, WILLIAM ANTHONY)Dec 1, 1992 - Nov 30, 2000
    NIH/NINDS
    EXCITOTOXICITY IN CIRCULATORY ARREST--BRAIN INJURY
    Role: Principal Investigator
    R37NS031238     (BAUMGARTNER, WILLIAM ANTHONY)Dec 1, 1992 - Nov 30, 2008
    NIH/NINDS
    EXCITOTOXICITY IN CIRCULATORY ARREST--BRAIN INJURY
    Role: Principal Investigator
    R01HL091541     (BAUMGARTNER, WILLIAM ANTHONY)Dec 1, 1992 - Jun 30, 2018
    NIH/NHLBI
    Excitotoxicity in Circulatory Arrest-Brain Injury
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    1. Magruder JT, Fraser CD, Grimm JC, Crawford TC, Beaty CA, Suarez-Pierre A, Hayes RL, Johnston MV, Baumgartner WA. Correlating Oxygen Delivery During Cardiopulmonary Bypass With the Neurologic Injury Biomarker Ubiquitin C-Terminal Hydrolase L1 (UCH-L1). J Cardiothorac Vasc Anesth. 2018 Jun 11. PMID: 29903683.
      View in: PubMed
    2. Conway SJ, Himmelrich S, Feeser SA, Flynn JA, Kravet SJ, Bailey J, Hebert LC, Donovan SH, Kachur SG, Brown PMC, Baumgartner WA, Berkowitz SA. Strategic Review Process for an Accountable Care Organization and Emerging Accountable Care Best Practices. Popul Health Manag. 2018 Oct; 21(5):357-365. PMID: 29393824.
      View in: PubMed
    3. Krishnan A, Suarez-Pierre A, Crawford TC, Zhou X, Russell SD, Berger RD, Calkins H, Baumgartner WA, Tandri H, Mandal K. Sympathectomy for Stabilization of Heart Failure Due to Drug-Refractory Ventricular Tachycardia. Ann Thorac Surg. 2018 Feb; 105(2):e51-e53. PMID: 29362191.
      View in: PubMed
    4. Boguslav M, Cohen KB, Baumgartner WA, Hunter LE. Improving precision in concept normalization. Pac Symp Biocomput. 2018; 23:566-577. PMID: 29218915.
      View in: PubMed
    5. Callahan TJ, Baumgartner WA, Bada M, Stefanski AL, Tripodi I, White EK, Hunter LE. OWL-NETS: Transforming OWL Representations for Improved Network Inference. Pac Symp Biocomput. 2018; 23:133-144. PMID: 29218876.
      View in: PubMed
    6. Cohen KB, Lanfranchi A, Choi MJ, Bada M, Baumgartner WA, Panteleyeva N, Verspoor K, Palmer M, Hunter LE. Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles. BMC Bioinformatics. 2017 Aug 17; 18(1):372. PMID: 28818042.
      View in: PubMed
    7. Dunham AM, Grega MA, Brown CH, McKhann GM, Baumgartner WA, Gottesman RF. Perioperative Low Arterial Oxygenation Is Associated With Increased Stroke Risk in Cardiac Surgery. Anesth Analg. 2017 07; 125(1):38-43. PMID: 28614129.
      View in: PubMed
    8. Baumgartner WA. Invited Commentary. Ann Thorac Surg. 2017 07; 104(1):169. PMID: 28633220.
      View in: PubMed
    9. Zhang F, Trent Magruder J, Lin YA, Crawford TC, Grimm JC, Sciortino CM, Wilson MA, Blue ME, Kannan S, Johnston MV, Baumgartner WA, Kannan RM. Generation-6 hydroxyl PAMAM dendrimers improve CNS penetration from intravenous administration in a large animal brain injury model. J Control Release. 2017 03 10; 249:173-182. PMID: 28137632.
      View in: PubMed
    10. Crawford TC, Carter MV, Patel RK, Suarez-Pierre A, Lin SZ, Magruder JT, Grimm JC, Cameron DE, Baumgartner WA, Mandal K. Management of sickle cell disease in patients undergoing cardiac surgery. J Card Surg. 2017 Feb; 32(2):80-84. PMID: 28093814.
      View in: PubMed
    11. Magruder JT, Belmustakov S, Ohkuma R, Collica S, Grimm JC, Crawford T, Conte JV, Baumgartner WA, Shah AS, Whitman GR. Attributable harm of severe bleeding after cardiac surgery in hemodynamically stable patients. Gen Thorac Cardiovasc Surg. 2017 Feb; 65(2):102-109. PMID: 27650660.
      View in: PubMed
    12. Choi M, Liu H, Baumgartner W, Zobel J, Verspoor K. Coreference resolution improves extraction of Biological Expression Language statements from texts. Database (Oxford). 2016; 2016. PMID: 27374122; PMCID: PMC4930833.
      View in: PubMed, PubMed Central
    13. Magruder JT, Collica S, Belmustakov S, Crawford TC, Grimm JC, Cameron DE, Baumgartner WA, Mandal K. Predictors of Late-Onset Atrial Fibrillation Following Isolated Mitral Valve Repairs in Patients With Preserved Ejection Fraction. J Card Surg. 2016 Aug; 31(8):486-92. PMID: 27302368.
      View in: PubMed
    14. Grimm JC, Magruder JT, Wilson MA, Blue ME, Crawford TC, Troncoso JC, Zhang F, Kannan S, Sciortino CM, Johnston MV, Kannan RM, Baumgartner WA. Nanotechnology Approaches to Targeting Inflammation and Excitotoxicity in a Canine Model of Hypothermic Circulatory Arrest-Induced Brain Injury. Ann Thorac Surg. 2016 Sep; 102(3):743-750. PMID: 27154161; PMCID: PMC4995124 [Available on 09/01/17].
      View in: PubMed, PubMed Central
    15. Myers MR, Magruder JT, Crawford TC, Grimm JC, Halushka MK, Baumgartner WA, Cameron DE. Surgical repair of aortic dissection 16 years post-Ross procedure. J Surg Case Rep. 2016 May 02; 2016(4). PMID: 27141044; PMCID: PMC4852982.
      View in: PubMed, PubMed Central
    16. Cohen KB, Baumgartner WA, Temnikova I. SuperCAT: The (New and Improved) Corpus Analysis Toolkit. LREC Int Conf Lang Resour Eval. 2016 May; 2016:2784-2788. PMID: 29568820.
      View in: PubMed
    17. Kogon B, Karamlou T, Baumgartner W, Merrill W, Backer C. Congenital cardiac surgery fellowship training: A status update. J Thorac Cardiovasc Surg. 2016 Jun; 151(6):1488-95. PMID: 27002229.
      View in: PubMed
    18. Livingston KM, Bada M, Baumgartner WA, Hunter LE. KaBOB: ontology-based semantic integration of biomedical databases. BMC Bioinformatics. 2015 Apr 23; 16:126. PMID: 25903923; PMCID: PMC4448321.
      View in: PubMed, PubMed Central
    19. Kilic A, Grimm JC, Magruder JT, Sciortino CM, Whitman GJ, Baumgartner WA, Conte JV. Trends, clinical outcomes, and cost implications of mitral valve repair versus replacement, concomitant with aortic valve replacement. J Thorac Cardiovasc Surg. 2015 Jun; 149(6):1614-9. PMID: 26060006.
      View in: PubMed
    20. Arnan MK, Hsieh TC, Yeboah J, Bertoni AG, Burke GL, Bahrainwala Z, Grega MA, Baumgartner WA, Gottesman RF. Postoperative blood urea nitrogen is associated with stroke in cardiac surgical patients. Ann Thorac Surg. 2015 Apr; 99(4):1314-20. PMID: 25683323.
      View in: PubMed
    21. Baumgartner WA. 50th Anniversary Perspective on Lower, RR, Dong E, Shumway NE. Suppression of Rejection Crises in the Cardiac Homograft. Ann Thorac Surg 1965;1:645-9. Ann Thorac Surg. 2015; 99(5):1497-8. PMID: 25952188.
      View in: PubMed
    22. Blue ME, Wilson MA, Beaty CA, George TJ, Arnaoutakis GJ, Haggerty KA, Jones M, Brawn J, Manmohan S, Lange MS, Johnston MV, Baumgartner WA, Troncoso JC. Brain injury in canine models of cardiac surgery. J Neuropathol Exp Neurol. 2014 Dec; 73(12):1134-43. PMID: 25383634; PMCID: PMC4232977.
      View in: PubMed, PubMed Central
    23. Temnikova IP, Baumgartner WA, Hailu ND, Nikolova I, McEnery T, Kilgarriff A, Angelova G, Cohen KB. Sublanguage Corpus Analysis Toolkit: A tool for assessing the representativeness and sublanguage characteristics of corpora. LREC Int Conf Lang Resour Eval. 2014 May; 2014:1714-1718. PMID: 29568819.
      View in: PubMed
    24. Haggerty KA, Beaty CA, George TJ, Arnaoutakis GJ, Baumgartner WA. Increased exposure improves recruitment: early results of a program designed to attract medical students into surgical careers. Ann Thorac Surg. 2014 Jun; 97(6):2111-4; discussion 2114. PMID: 24725839.
      View in: PubMed
    25. Arnaoutakis GJ, Bittle GJ, Allen JG, Weiss ES, Alejo J, Baumgartner WA, Shah AS, Wolfgang CL, Efron DT, Conte JV. General and acute care surgical procedures in patients with left ventricular assist devices. World J Surg. 2014 Apr; 38(4):765-73. PMID: 24357244.
      View in: PubMed
    26. Kilic A, Conte JV, Baumgartner WA, Russell SD, Merlo CA, Shah AS. Does recipient age impact functional outcomes of orthotopic heart transplantation? Ann Thorac Surg. 2014 May; 97(5):1636-42. PMID: 24656958.
      View in: PubMed
    27. Funk C, Baumgartner W, Garcia B, Roeder C, Bada M, Cohen KB, Hunter LE, Verspoor K. Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters. BMC Bioinformatics. 2014 Feb 26; 15:59. PMID: 24571547; PMCID: PMC4015610.
      View in: PubMed, PubMed Central
    28. Mishra MK, Beaty CA, Lesniak WG, Kambhampati SP, Zhang F, Wilson MA, Blue ME, Troncoso JC, Kannan S, Johnston MV, Baumgartner WA, Kannan RM. Dendrimer brain uptake and targeted therapy for brain injury in a large animal model of hypothermic circulatory arrest. ACS Nano. 2014 Mar 25; 8(3):2134-47. PMID: 24499315; PMCID: PMC4004292.
      View in: PubMed, PubMed Central
    29. Baumgartner WA, Mathisen DJ. The STS Annual Meeting. Ann Thorac Surg. 2014 Jan; 97(1 Suppl):S9-15. PMID: 24384254.
      View in: PubMed
    30. Ono M, Brown C, Lee JK, Gottesman RF, Kraut M, Black J, Shah A, Cameron DE, Baumgartner W, Hogue CW. Cerebral blood flow autoregulation is preserved after hypothermic circulatory arrest. Ann Thorac Surg. 2013 Dec; 96(6):2045. PMID: 24446562; PMCID: PMC3972490.
      View in: PubMed, PubMed Central
    31. Kilic A, Shah AS, Conte JV, Mandal K, Baumgartner WA, Cameron DE, Whitman GJ. Understanding variability in hospital-specific costs of coronary artery bypass grafting represents an opportunity for standardizing care and improving resource use. J Thorac Cardiovasc Surg. 2014 Jan; 147(1):109-15. PMID: 24100097.
      View in: PubMed
    32. Calhoon JH, Shemin RJ, Allen MS, Baumgartner WA. The American Board of Thoracic Surgery: update. J Thorac Cardiovasc Surg. 2013 May; 145(5):1190-2. PMID: 23597623.
      View in: PubMed
    33. Baumgartner WA, Calhoon JH, Shemin RJ, Allen MS. Critical care: American Board of Thoracic Surgery update. J Thorac Cardiovasc Surg. 2013 Jun; 145(6):1448-9. PMID: 23523035.
      View in: PubMed
    34. Kilic A, Sultan I, Yuh DD, Shah AS, Baumgartner WA, Cameron DE, Conte JV. Ventricular assist device implantation in the elderly: nationwide outcomes in the United States. J Card Surg. 2013 Mar; 28(2):183-9. PMID: 23387349.
      View in: PubMed
    35. Beaty CA, Arnaoutakis GJ, Grega MA, Robinson CW, George TJ, Baumgartner WA, Gottesman RF, McKhann GM, Cameron DE, Whitman GJ. The role of head computed tomography imaging in the evaluation of postoperative neurologic deficits in cardiac surgery patients. Ann Thorac Surg. 2013 Feb; 95(2):548-54. PMID: 23218967; PMCID: PMC3602972.
      View in: PubMed, PubMed Central
    36. Kilic A, Weiss ES, Yuh DD, Shah AS, Cameron DE, Baumgartner WA, Conte JV. Institutional factors beyond procedural volume significantly impact center variability in outcomes after orthotopic heart transplantation. Ann Surg. 2012 Oct; 256(4):616-23. PMID: 22964734.
      View in: PubMed
    37. Stain SC, Cogbill TH, Ellison EC, Britt LD, Ricotta JJ, Calhoun JH, Baumgartner WA. Surgical training models: a new vision. Broad-based general surgery and rural general surgery training. Curr Probl Surg. 2012 Oct; 49(10):565-623. PMID: 22967484.
      View in: PubMed
    38. Kilic A, Shah AS, Conte JV, Baumgartner WA, Yuh DD. Operative outcomes in mitral valve surgery: combined effect of surgeon and hospital volume in a population-based analysis. J Thorac Cardiovasc Surg. 2013 Sep; 146(3):638-46. PMID: 22914251.
      View in: PubMed
    39. Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA, Bada M, Palmer M, Hunter LE. A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools. BMC Bioinformatics. 2012 Aug 17; 13:207. PMID: 22901054; PMCID: PMC3483229.
      View in: PubMed, PubMed Central
    40. Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA, Cohen KB, Verspoor K, Blake JA, Hunter LE. Concept annotation in the CRAFT corpus. BMC Bioinformatics. 2012 Jul 09; 13:161. PMID: 22776079; PMCID: PMC3476437.
      View in: PubMed, PubMed Central
    41. Kilic A, Weiss ES, Allen JG, Conte JV, Shah AS, Baumgartner WA, Yuh DD. Simple score to assess the risk of rejection after orthotopic heart transplantation. Circulation. 2012 Jun 19; 125(24):3013-21. PMID: 22634267.
      View in: PubMed
    42. George TJ, Arnaoutakis GJ, Beaty CA, Kilic A, Baumgartner WA, Conte JV. Contemporary etiologies, risk factors, and outcomes after pericardiectomy. Ann Thorac Surg. 2012 Aug; 94(2):445-51. PMID: 22621875; PMCID: PMC3610598.
      View in: PubMed, PubMed Central
    43. Liu H, Christiansen T, Baumgartner WA, Verspoor K. BioLemmatizer: a lemmatization tool for morphological processing of biomedical text. J Biomed Semantics. 2012 Apr 01; 3:3. PMID: 22464129; PMCID: PMC3359276.
      View in: PubMed, PubMed Central
    44. Rusch VW, Calhoon JH, Allen MS, Baumgartner W. The American Board of Thoracic Surgery: update. J Thorac Cardiovasc Surg. 2012 Mar; 143(3):519-21. PMID: 22340026.
      View in: PubMed
    45. Rusch VW, Calhoon JH, Allen MS, Baumgartner W. The American Board of Thoracic Surgery: update. Ann Thorac Surg. 2012 Feb; 93(2):363-5. PMID: 22269700.
      View in: PubMed
    46. Selnes OA, Gottesman RF, Grega MA, Baumgartner WA, Zeger SL, McKhann GM. Cognitive and neurologic outcomes after coronary-artery bypass surgery. N Engl J Med. 2012 Jan 19; 366(3):250-7. PMID: 22256807.
      View in: PubMed
    47. Weiss ES, Allen JG, Kilic A, Russell SD, Baumgartner WA, Conte JV, Shah AS. Development of a quantitative donor risk index to predict short-term mortality in orthotopic heart transplantation. J Heart Lung Transplant. 2012 Mar; 31(3):266-73. PMID: 22093382.
      View in: PubMed
    48. Cohen KB, Verspoor K, Johnson HL, Roeder C, Ogren PV, Baumgartner WA, White E, Tipney H, Hunter L. HIGH-PRECISION BIOLOGICAL EVENT EXTRACTION: EFFECTS OF SYSTEM AND OF DATA. Comput Intell. 2011 Nov; 27(4):681-701. PMID: 25937701.
      View in: PubMed
    49. Fann JI, Baumgartner WA. Historical perspectives of the American Association for Thoracic Surgery: Norman E. Shumway, Jr (1923-2006). J Thorac Cardiovasc Surg. 2011 Dec; 142(6):1299-302. PMID: 22014718.
      View in: PubMed
    50. Arnaoutakis GJ, George TJ, Wang KK, Wilson MA, Allen JG, Robinson CW, Haggerty KA, Weiss ES, Blue ME, Talbot CC, Troncoso JC, Johnston MV, Baumgartner WA. Serum levels of neuron-specific ubiquitin carboxyl-terminal esterase-L1 predict brain injury in a canine model of hypothermic circulatory arrest. J Thorac Cardiovasc Surg. 2011 Oct; 142(4):902-910.e1. PMID: 21924148; PMCID: PMC3177106.
      View in: PubMed, PubMed Central
    51. Allen JG, Weiss ES, Arnaoutakis GJ, Russell SD, Baumgartner WA, Shah AS, Conte JV. Insurance and education predict long-term survival after orthotopic heart transplantation in the United States. J Heart Lung Transplant. 2012 Jan; 31(1):52-60. PMID: 21959122.
      View in: PubMed
    52. Tam V, Arnaoutakis GJ, George TJ, Russell SD, Merlo CA, Conte JV, Baumgartner WA, Shah AS. Marital status improves survival after orthotopic heart transplantation. J Heart Lung Transplant. 2011 Dec; 30(12):1389-94. PMID: 21907593.
      View in: PubMed
    53. Petrovic MA, Aboumatar H, Baumgartner WA, Ulatowski JA, Moyer J, Chang TY, Camp MS, Kowalski J, Senger CM, Martinez EA. Pilot implementation of a perioperative protocol to guide operating room-to-intensive care unit patient handoffs. J Cardiothorac Vasc Anesth. 2012 Feb; 26(1):11-6. PMID: 21889365.
      View in: PubMed
    54. George TJ, Arnaoutakis GJ, Baumgartner WA, Shah AS, Conte JV. Organ storage with University of Wisconsin solution is associated with improved outcomes after orthotopic heart transplantation. J Heart Lung Transplant. 2011 Sep; 30(9):1033-43. PMID: 21683620.
      View in: PubMed
    55. George TJ, Arnaoutakis GJ, Merlo CA, Kemp CD, Baumgartner WA, Conte JV, Shah AS. Association of operative time of day with outcomes after thoracic organ transplant. JAMA. 2011 Jun 01; 305(21):2193-9. PMID: 21632483.
      View in: PubMed
    56. Arnaoutakis GJ, George TJ, Alejo DE, Merlo CA, Baumgartner WA, Cameron DE, Shah AS. Society of Thoracic Surgeons Risk Score predicts hospital charges and resource use after aortic valve replacement. J Thorac Cardiovasc Surg. 2011 Sep; 142(3):650-5. PMID: 21497834; PMCID: PMC3156832.
      View in: PubMed, PubMed Central
    57. Bahrainwala ZS, Grega MA, Hogue CW, Baumgartner WA, Selnes OA, McKhann GM, Gottesman RF. Intraoperative hemoglobin levels and transfusion independently predict stroke after cardiac operations. Ann Thorac Surg. 2011 Apr; 91(4):1113-8. PMID: 21440132.
      View in: PubMed
    58. Arnaoutakis GJ, Allen JG, Merlo CA, Sullivan BE, Baumgartner WA, Conte JV, Shah AS. Impact of the lung allocation score on resource utilization after lung transplantation in the United States. J Heart Lung Transplant. 2011 Jan; 30(1):14-21. PMID: 20869886; PMCID: PMC3132211.
      View in: PubMed, PubMed Central
    59. Arnaoutakis GJ, Allen JG, Merlo CA, Baumgartner WA, Conte JV, Shah AS. Low potassium dextran is superior to University of Wisconsin solution in high-risk lung transplant recipients. J Heart Lung Transplant. 2010 Dec; 29(12):1380-7. PMID: 20634098; PMCID: PMC3132206.
      View in: PubMed, PubMed Central
    60. Verspoor K, Roeder C, Johnson HL, Cohen KB, Baumgartner WA, Hunter LE. Exploring species-based strategies for gene normalization. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep; 7(3):462-71. PMID: 20671318; PMCID: PMC2929766.
      View in: PubMed, PubMed Central
    61. Allen JG, Weiss ES, Wilson MA, Arnaoutakis GJ, Blue ME, Talbot CC, Jie C, Lange MS, Troncoso JC, Johnston MV, Baumgartner WA. Hawley H. Seiler Resident Award. Transcriptional profile of brain injury in hypothermic circulatory arrest and cardiopulmonary bypass. Ann Thorac Surg. 2010 Jun; 89(6):1965-71. PMID: 20494057; PMCID: PMC3031914.
      View in: PubMed, PubMed Central
    62. Allen JG, Weiss ES, Arnaoutakis GJ, Russell SD, Baumgartner WA, Conte JV, Shah AS. The impact of race on survival after heart transplantation: an analysis of more than 20,000 patients. Ann Thorac Surg. 2010 Jun; 89(6):1956-63; discussion 1963-4. PMID: 20494056.
      View in: PubMed
    63. Roeder C, Jonquet C, Shah NH, Baumgartner WA, Verspoor K, Hunter L. A UIMA wrapper for the NCBO annotator. Bioinformatics. 2010 Jul 15; 26(14):1800-1. PMID: 20505005; PMCID: PMC2894505.
      View in: PubMed, PubMed Central
    64. Gottesman RF, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, Selnes OA, McKhann GM. Delirium after coronary artery bypass graft surgery and late mortality. Ann Neurol. 2010 Mar; 67(3):338-44. PMID: 20373345; PMCID: PMC3723404.
      View in: PubMed, PubMed Central
    65. Tseng EE, Brock MV, Lange MS, Troncoso JC, Blue ME, Lowenstein CJ, Johnston MV, Baumgartner WA. Glutamate excitotoxicity mediates neuronal apoptosis after hypothermic circulatory arrest. Ann Thorac Surg. 2010 Feb; 89(2):440-5. PMID: 20103318; PMCID: PMC3076934.
      View in: PubMed, PubMed Central
    66. Gottesman RF, Grega MA, Bailey MM, Zeger SL, Baumgartner WA, McKhann GM, Selnes OA. Association between hypotension, low ejection fraction and cognitive performance in cardiac patients. Behav Neurol. 2010; 22(1-2):63-71. PMID: 20543460; PMCID: PMC3065346.
      View in: PubMed, PubMed Central
    67. Kobayashi KJ, Williams JA, Nwakanma LU, Weiss ES, Gott VL, Baumgartner WA, Conte JV. EuroSCORE predicts short- and mid-term mortality in combined aortic valve replacement and coronary artery bypass patients. J Card Surg. 2009 Nov-Dec; 24(6):637-43. PMID: 20078709.
      View in: PubMed
    68. Weiss ES, Allen JG, Meguid RA, Patel ND, Merlo CA, Orens JB, Baumgartner WA, Conte JV, Shah AS. The impact of center volume on survival in lung transplantation: an analysis of more than 10,000 cases. Ann Thorac Surg. 2009 Oct; 88(4):1062-70. PMID: 19766782.
      View in: PubMed
    69. Allen JG, Weiss ES, Merlo CA, Baumgartner WA, Conte JV, Shah AS. Impact of donor-recipient race matching on survival after lung transplantation: analysis of over 11,000 patients. J Heart Lung Transplant. 2009 Oct; 28(10):1063-71. PMID: 19782288.
      View in: PubMed
    70. Selnes OA, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, McKhann GM. Do management strategies for coronary artery disease influence 6-year cognitive outcomes? Ann Thorac Surg. 2009 Aug; 88(2):445-454. PMID: 19632391; PMCID: PMC2753795.
      View in: PubMed, PubMed Central
    71. Weiss ES, Wang KK, Allen JG, Blue ME, Nwakanma LU, Liu MC, Lange MS, Berrong J, Wilson MA, Gott VL, Troncoso JC, Hayes RL, Johnston MV, Baumgartner WA. Alpha II-spectrin breakdown products serve as novel markers of brain injury severity in a canine model of hypothermic circulatory arrest. Ann Thorac Surg. 2009 Aug; 88(2):543-50. PMID: 19632410; PMCID: PMC3412404.
      View in: PubMed, PubMed Central
    72. Weiss ES, Allen JG, Patel ND, Russell SD, Baumgartner WA, Shah AS, Conte JV. The impact of donor-recipient sex matching on survival after orthotopic heart transplantation: analysis of 18 000 transplants in the modern era. Circ Heart Fail. 2009 Sep; 2(5):401-8. PMID: 19808369.
      View in: PubMed
    73. Allen JG, Weiss ES, Patel ND, Alejo DE, Fitton TP, Williams JA, Barreiro CJ, Nwakanma LU, Yang SC, Cameron DE, Gott VL, Baumgartner WA. Inspiring medical students to pursue surgical careers: outcomes from our cardiothoracic surgery research program. Ann Thorac Surg. 2009 Jun; 87(6):1816-9. PMID: 19463601.
      View in: PubMed
    74. Kano Y, Baumgartner WA, McCrohon L, Ananiadou S, Cohen KB, Hunter L, Tsujii J. U-Compare: share and compare text mining tools with UIMA. Bioinformatics. 2009 Aug 01; 25(15):1997-8. PMID: 19414535; PMCID: PMC2712335.
      View in: PubMed, PubMed Central
    75. Blasco-Colmenares E, Perl TM, Guallar E, Baumgartner WA, Conte JV, Alejo D, Pastor-Barriuso R, Sharrett AR, Faraday N. Aspirin plus clopidogrel and risk of infection after coronary artery bypass surgery. Arch Intern Med. 2009 Apr 27; 169(8):788-96. PMID: 19398691.
      View in: PubMed
    76. Leach SM, Tipney H, Feng W, Baumgartner WA, Kasliwal P, Schuyler RP, Williams T, Spritz RA, Hunter L. Biomedical discovery acceleration, with applications to craniofacial development. PLoS Comput Biol. 2009 Mar; 5(3):e1000215. PMID: 19325874; PMCID: PMC2653649.
      View in: PubMed, PubMed Central
    77. Weiss ES, Champion HC, Williams JA, Baumgartner WA, Shah AS. Long-acting oral phosphodiesterase inhibition preconditions against reperfusion injury in an experimental lung transplantation model. J Thorac Cardiovasc Surg. 2009 May; 137(5):1249-57. PMID: 19379999.
      View in: PubMed
    78. Baumgartner WA, Reitz BA, Gott VL, Shumway SJ. Norman E. Shumway, MD, PhD: visionary, innovator, humorist. J Thorac Cardiovasc Surg. 2009 Feb; 137(2):269-77. PMID: 19185135.
      View in: PubMed
    79. McKhann GM, Selnes OA, Grega MA, Bailey MM, Pham LD, Baumgartner WA, Zeger SL. Subjective memory symptoms in surgical and nonsurgical coronary artery patients: 6-year follow-up. Ann Thorac Surg. 2009 Jan; 87(1):27-34. PMID: 19101263; PMCID: PMC2753233.
      View in: PubMed, PubMed Central
    80. Weiss ES, Meguid RA, Patel ND, Russell SD, Shah AS, Baumgartner WA, Conte JV. Increased mortality at low-volume orthotopic heart transplantation centers: should current standards change? Ann Thorac Surg. 2008 Oct; 86(4):1250-9; discussion 1259-60. PMID: 18805171.
      View in: PubMed
    81. Patel ND, Weiss ES, Nwakanma LU, Russell SD, Baumgartner WA, Shah AS, Conte JV. Impact of donor-to-recipient weight ratio on survival after heart transplantation: analysis of the United Network for Organ Sharing Database. Circulation. 2008 Sep 30; 118(14 Suppl):S83-8. PMID: 18824775.
      View in: PubMed
    82. Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo CJ, Hsu CN, Tsai RT, Hung HC, Lau WW, Johnson CA, Saetre R, Yoshida K, Chen YH, Kim S, Shin SY, Zhang BT, Baumgartner WA, Hunter L, Haddow B, Matthews M, Wang X, Ruch P, Ehrler F, Ozgür A, Erkan G, Radev DR, Krauthammer M, Luong T, Hoffmann R, Sander C, Valencia A. Introducing meta-services for biomedical information extraction. Genome Biol. 2008; 9 Suppl 2:S6. PMID: 18834497; PMCID: PMC2559990.
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    83. Prucz RB, Weiss ES, Patel ND, Nwakanma LU, Baumgartner WA, Conte JV. Coronary artery bypass grafting with or without surgical ventricular restoration: a comparison. Ann Thorac Surg. 2008 Sep; 86(3):806-14; discussion 806-14. PMID: 18721565.
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    84. Smith L, Tanabe LK, Ando RJ, Kuo CJ, Chung IF, Hsu CN, Lin YS, Klinger R, Friedrich CM, Ganchev K, Torii M, Liu H, Haddow B, Struble CA, Povinelli RJ, Vlachos A, Baumgartner WA, Hunter L, Carpenter B, Tsai RT, Dai HJ, Liu F, Chen Y, Sun C, Katrenko S, Adriaans P, Blaschke C, Torres R, Neves M, Nakov P, Divoli A, Maña-López M, Mata J, Wilbur WJ. Overview of BioCreative II gene mention recognition. Genome Biol. 2008; 9 Suppl 2:S2. PMID: 18834493; PMCID: PMC2559986.
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    85. Baumgartner WA, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L. Concept recognition for extracting protein interaction relations from biomedical text. Genome Biol. 2008; 9 Suppl 2:S9. PMID: 18834500; PMCID: PMC2559993.
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    86. Selnes OA, Grega MA, Bailey MM, Pham LD, Zeger SL, Baumgartner WA, McKhann GM. Cognition 6 years after surgical or medical therapy for coronary artery disease. Ann Neurol. 2008 May; 63(5):581-90. PMID: 18481292.
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    87. Gabow AP, Leach SM, Baumgartner WA, Hunter LE, Goldberg DS. Improving protein function prediction methods with integrated literature data. BMC Bioinformatics. 2008 Apr 15; 9:198. PMID: 18412966; PMCID: PMC2375131.
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    88. Hunter L, Lu Z, Firby J, Baumgartner WA, Johnson HL, Ogren PV, Cohen KB. OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression. BMC Bioinformatics. 2008 Jan 31; 9:78. PMID: 18237434; PMCID: PMC2275248.
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    89. Baumgartner WA, Cohen KB, Hunter L. An open-source framework for large-scale, flexible evaluation of biomedical text mining systems. J Biomed Discov Collab. 2008 Jan 29; 3:1. PMID: 18230184; PMCID: PMC2276192.
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    90. Caporaso JG, Baumgartner WA, Randolph DA, Cohen KB, Hunter L. Rapid pattern development for concept recognition systems: application to point mutations. J Bioinform Comput Biol. 2007 Dec; 5(6):1233-59. PMID: 18172927.
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    91. Selnes OA, Grega MA, Bailey MM, Pham L, Zeger S, Baumgartner WA, McKhann GM. Neurocognitive outcomes 3 years after coronary artery bypass graft surgery: a controlled study. Ann Thorac Surg. 2007 Dec; 84(6):1885-96. PMID: 18036903.
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    92. Williams JA, Bansal AK, Kim BJ, Nwakanma LU, Patel ND, Seth AK, Alejo DE, Gott VL, Vricella LA, Baumgartner WA, Cameron DE. Two thousand Blalock-Taussig shunts: a six-decade experience. Ann Thorac Surg. 2007 Dec; 84(6):2070-5; discussion 2070-5. PMID: 18036938.
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    93. Nwakanma LU, Williams JA, Weiss ES, Russell SD, Baumgartner WA, Conte JV. Influence of pretransplant panel-reactive antibody on outcomes in 8,160 heart transplant recipients in recent era. Ann Thorac Surg. 2007 Nov; 84(5):1556-62; discussion 1562-3. PMID: 17954062.
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    94. Baumgartner WA. Neurocognitive changes after coronary bypass surgery. Circulation. 2007 Oct 23; 116(17):1879-81. PMID: 17965403.
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    95. Johnson HL, Baumgartner WA, Krallinger M, Cohen KB, Hunter L. Corpus refactoring: a feasibility study. J Biomed Discov Collab. 2007 Sep 13; 2:4. PMID: 17854502; PMCID: PMC2072937.
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    96. Poe SS, Dawson PB, Cafeo C, Sedlander D, Curtis C, Meyer P, Blumenthal R, Baumgartner W, Allen J. Use of the ABC care bundle to standardize guideline implementation in a cardiac surgical population: a pilot study. J Nurs Care Qual. 2007 Jul-Sep; 22(3):247-54. PMID: 17563594.
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    97. Baumgartner WA, Cohen KB, Fox LM, Acquaah-Mensah G, Hunter L. Manual curation is not sufficient for annotation of genomic databases. Bioinformatics. 2007 Jul 01; 23(13):i41-8. PMID: 17646325; PMCID: PMC2516305.
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    98. Gottesman RF, Hillis AE, Grega MA, Borowicz LM, Selnes OA, Baumgartner WA, McKhann GM. Early postoperative cognitive dysfunction and blood pressure during coronary artery bypass graft operation. Arch Neurol. 2007 Aug; 64(8):1111-4. PMID: 17562924.
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    99. Caporaso JG, Baumgartner WA, Randolph DA, Cohen KB, Hunter L. MutationFinder: a high-performance system for extracting point mutation mentions from text. Bioinformatics. 2007 Jul 15; 23(14):1862-5. PMID: 17495998; PMCID: PMC2516306.
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    100. Kobayashi KJ, Williams JA, Nwakanma L, Gott VL, Baumgartner WA, Conte JV. Aortic valve replacement and concomitant coronary artery bypass: assessing the impact of multiple grafts. Ann Thorac Surg. 2007 Mar; 83(3):969-78. PMID: 17307443.
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    101. Olbrecht VA, Barreiro CJ, Bonde PN, Williams JA, Baumgartner WA, Gott VL, Conte JV. Clinical outcomes of noninfectious sternal dehiscence after median sternotomy. Ann Thorac Surg. 2006 Sep; 82(3):902-7. PMID: 16928505.
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    102. Gottesman RF, Sherman PM, Grega MA, Yousem DM, Borowicz LM, Selnes OA, Baumgartner WA, McKhann GM. Watershed strokes after cardiac surgery: diagnosis, etiology, and outcome. Stroke. 2006 Sep; 37(9):2306-11. PMID: 16857947.
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    103. Gott VL, Patel ND, Yang SC, Baumgartner WA. Attracting outstanding students (premedical and medical) to a career in cardiothoracic surgery. Ann Thorac Surg. 2006 Jul; 82(1):1-3. PMID: 16798176.
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    104. Williams JA, Barreiro CJ, Nwakanma LU, Lange MS, Kratz LE, Blue ME, Berrong J, Patel ND, Gott VL, Troncoso JC, Johnston MV, Baumgartner WA. Valproic acid prevents brain injury in a canine model of hypothermic circulatory arrest: a promising new approach to neuroprotection during cardiac surgery. Ann Thorac Surg. 2006 Jun; 81(6):2235-41; discussion 2241-2. PMID: 16731160.
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    105. Barreiro CJ, Williams JA, Fitton TP, Lange MS, Blue ME, Kratz L, Barker PB, Degaonkar M, Gott VL, Troncoso JC, Johnston MV, Baumgartner WA. Noninvasive assessment of brain injury in a canine model of hypothermic circulatory arrest using magnetic resonance spectroscopy. Ann Thorac Surg. 2006 May; 81(5):1593-8. PMID: 16631640.
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    106. Johnson HL, Cohen KB, Baumgartner WA, Lu Z, Bada M, Kester T, Kim H, Hunter L. Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies. Pac Symp Biocomput. 2006; 28-39. PMID: 17094225; PMCID: PMC1810343.
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    107. McKhann GM, Grega MA, Borowicz LM, Baumgartner WA, Selnes OA. Stroke and encephalopathy after cardiac surgery: an update. Stroke. 2006 Feb; 37(2):562-71. PMID: 16373636.
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    108. Barreiro CJ, Patel ND, Fitton TP, Williams JA, Bonde PN, Chan V, Alejo DE, Gott VL, Baumgartner WA. Aortic valve replacement and concomitant mitral valve regurgitation in the elderly: impact on survival and functional outcome. Circulation. 2005 Aug 30; 112(9 Suppl):I443-7. PMID: 16159860.
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    109. Selnes OA, Baumgartner WA. Cognitive dysfunction following cardiopulmonary bypass and cerebral protection. Ann Thorac Surg. 2005 Aug; 80(2):780-1. PMID: 16044528.
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    110. Yuh DD, Simon BA, Fernandez-Bustamante A, Ramey N, Baumgartner WA. Totally endoscopic robot-assisted transmyocardial revascularization. J Thorac Cardiovasc Surg. 2005 Jul; 130(1):120-4. PMID: 15999050.
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    111. Baumgartner WA, Burrows S, del Nido PJ, Gardner TJ, Goldberg S, Gorman RC, Letsou GV, Mascette A, Michler RE, Puskas JD, Rose EA, Rosengart TK, Sellke FW, Shumway SJ, Wilke N. Recommendations of the National Heart, Lung, and Blood Institute Working Group on Future Direction in Cardiac Surgery. Circulation. 2005 Jun 07; 111(22):3007-13. PMID: 15939834.
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    112. Baumgartner WA. Neuroprotection in cardiac surgery. Ann Thorac Surg. 2005 Jun; 79(6):S2254-6. PMID: 15919261.
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    113. Selnes OA, Grega MA, Borowicz LM, Barry S, Zeger S, Baumgartner WA, McKhann GM. Cognitive outcomes three years after coronary artery bypass surgery: a comparison of on-pump coronary artery bypass graft surgery and nonsurgical controls. Ann Thorac Surg. 2005 Apr; 79(4):1201-9. PMID: 15797050.
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    114. Harkness JR, Fitton TP, Barreiro CJ, Alejo D, Gott VL, Baumgartner WA, Yuh DD. A 32-year experience with surgical repair of sinus of valsalva aneurysms. J Card Surg. 2005 Mar-Apr; 20(2):198-204. PMID: 15725151.
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    115. Bethea BT, Salazar JD, Grega MA, Doty JR, Fitton TP, Alejo DE, Borowicz LM, Gott VL, Sussman MS, Baumgartner WA. Determining the utility of temporary pacing wires after coronary artery bypass surgery. Ann Thorac Surg. 2005 Jan; 79(1):104-7. PMID: 15620924.
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    116. Dodd-o JM, Welsh LE, Salazar JD, Walinsky PL, Peck EA, Shake JG, Caparrelli DJ, Ziegelstein RC, Zweier JL, Baumgartner WA, Pearse DB. Effect of NADPH oxidase inhibition on cardiopulmonary bypass-induced lung injury. Am J Physiol Heart Circ Physiol. 2004 Aug; 287(2):H927-36. PMID: 15277207.
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    117. Baumgartner WA, Peterson AJ, Presson RG, Tanabe N, Jaryszak EM, Wagner WW. Blood flow switching among pulmonary capillaries is decreased during high hematocrit. J Appl Physiol (1985). 2004 Aug; 97(2):522-6. PMID: 15247197.
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    118. Kalyani SD, Miller NR, Dong LM, Baumgartner WA, Alejo DE, Gilbert TB. Incidence of and risk factors for perioperative optic neuropathy after cardiac surgery. Ann Thorac Surg. 2004 Jul; 78(1):34-7. PMID: 15223397.
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    119. Durand DJ, Perler BA, Roseborough GS, Grega MA, Borowicz LM, Baumgartner WA, Yuh DD. Mandatory versus selective preoperative carotid screening: a retrospective analysis. Ann Thorac Surg. 2004 Jul; 78(1):159-66; discussion 159-66. PMID: 15223422.
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    120. Bethea BT, Okamura AM, Kitagawa M, Fitton TP, Cattaneo SM, Gott VL, Baumgartner WA, Yuh DD. Application of haptic feedback to robotic surgery. J Laparoendosc Adv Surg Tech A. 2004 Jun; 14(3):191-5. PMID: 15245675; PMCID: PMC1283126.
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    121. McKhann GM, Grega MA, Borowicz LM, Selnes OA, Baumgartner WA, Royall RM. Encephalopathy and Stroke After Coronary Artery Bypass Grafting. Curr Treat Options Cardiovasc Med. 2004 06; 6(3):171-178. PMID: 15096308.
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    122. Fitton TP, Wei C, Lin R, Bethea BT, Barreiro CJ, Amado L, Gage F, Hare J, Baumgartner WA, Conte JV. Impact of 24 h continuous hypothermic perfusion on heart preservation by assessment of oxidative stress. Clin Transplant. 2004; 18 Suppl 12:22-7. PMID: 15217403.
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    123. Baumgartner WA. Neurologic injury after cardiopulmonary bypass surgery. J Neurosurg Anesthesiol. 2004 Jan; 16(1):102-4. PMID: 14676581.
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    124. Teshima Y, Akao M, Baumgartner WA, Marbán E. Nicorandil prevents oxidative stress-induced apoptosis in neurons by activating mitochondrial ATP-sensitive potassium channels. Brain Res. 2003 Nov 14; 990(1-2):45-50. PMID: 14568328.
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    125. Dodd-o JM, Welsh LE, Salazar JD, Walinsky PL, Peck EA, Shake JG, Caparrelli DJ, Bethea BT, Cattaneo SM, Baumgartner WA, Pearse DB. Effect of bronchial artery blood flow on cardiopulmonary bypass-induced lung injury. Am J Physiol Heart Circ Physiol. 2004 Feb; 286(2):H693-700. PMID: 14563666.
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    126. Chong T, Alejo DE, Greene PS, Redmond JM, Sussman MS, Baumgartner WA, Cameron DE. Cardiac valve replacement in human immunodeficiency virus-infected patients. Ann Thorac Surg. 2003 Aug; 76(2):478-80; discussion 480-1. PMID: 12902088.
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    127. Baumgartner WA, Jaryszak EM, Peterson AJ, Presson RG, Wagner WW. Heterogeneous capillary recruitment among adjoining alveoli. J Appl Physiol (1985). 2003 Aug; 95(2):469-76. PMID: 12851416.
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    128. Teshima Y, Akao M, Li RA, Chong TH, Baumgartner WA, Johnston MV, Marbán E. Mitochondrial ATP-sensitive potassium channel activation protects cerebellar granule neurons from apoptosis induced by oxidative stress. Stroke. 2003 Jul; 34(7):1796-802. PMID: 12791941.
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    129. Baumgartner WA. Cardiothoracic surgery: a specialty in transition--good to great? Ann Thorac Surg. 2003 Jun; 75(6):1685-92. PMID: 12822600.
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    130. Selnes OA, Grega MA, Borowicz LM, Royall RM, McKhann GM, Baumgartner WA. Cognitive changes with coronary artery disease: a prospective study of coronary artery bypass graft patients and nonsurgical controls. Ann Thorac Surg. 2003 May; 75(5):1377-84; discussion 1384-6. PMID: 12735550.
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    131. Grega MA, Borowicz LM, Baumgartner WA. Impact of single clamp versus double clamp technique on neurologic outcome. Ann Thorac Surg. 2003 May; 75(5):1387-91. PMID: 12735551.
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    132. Gillinov AM, Blackstone EH, Alster JM, Craver JM, Baumgartner WA, Brewster SA, Kleinman LH, Smedira NG. The Carbomedics Top Hat supraannular aortic valve: a multicenter study. Ann Thorac Surg. 2003 Apr; 75(4):1175-80. PMID: 12683558.
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    133. Nabors LK, Baumgartner WA, Janke SJ, Rose JR, Wagner WW, Capen RL. Red blood cell orientation in pulmonary capillaries and its effect on gas diffusion. J Appl Physiol (1985). 2003 Apr; 94(4):1634-40. PMID: 12626477.
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    134. Baumgartner WA. Final thoughts on a year of significant change. Ann Thorac Surg. 2003 Jan; 75(1):9-10. PMID: 12537183.
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    135. Doty JR, Walinsky PL, Salazar JD, Brawn J, Haggerty M, Redmond JM, Baumgartner WA, Gott VL. Left atrial-inferior vena cava bypass achieves retroperfusion of the porcine spinal cord: morphologic and preliminary physiologic studies. J Surg Res. 2002 Nov; 108(1):157-64. PMID: 12443728.
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    136. Conte JV, Baumgartner WA. Commentary on Cadaveric-donor organ recovery at a hospital-independent facility. Transplantation. 2002 Oct 15; 74(7):931-2. PMID: 12408165.
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    137. McKhann GM, Grega MA, Borowicz LM, Bechamps M, Selnes OA, Baumgartner WA, Royall RM. Encephalopathy and stroke after coronary artery bypass grafting: incidence, consequences, and prediction. Arch Neurol. 2002 Sep; 59(9):1422-8. PMID: 12223028.
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    138. Caparrelli DJ, Cattaneo SM, Bethea BT, Shake JG, Eberhart C, Blue ME, Marbán E, Johnston MV, Baumgartner WA, Gott VL. Pharmacological preconditioning ameliorates neurological injury in a model of spinal cord ischemia. Ann Thorac Surg. 2002 Sep; 74(3):838-44; discussion 844-5. PMID: 12238848.
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    139. Bober M, Wiehe K, Yung C, Onal Suzek T, Lin M, Baumgartner W, Winslow R. CaGE: cardiac gene expression knowledgebase. Bioinformatics. 2002 Jul; 18(7):1013-4. PMID: 12117801.
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    140. Shake JG, Gruber PJ, Baumgartner WA, Senechal G, Meyers J, Redmond JM, Pittenger MF, Martin BJ. Mesenchymal stem cell implantation in a swine myocardial infarct model: engraftment and functional effects. Ann Thorac Surg. 2002 Jun; 73(6):1919-25; discussion 1926. PMID: 12078791.
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    141. Presson RG, Baumgartner WA, Peterson AJ, Glenny RW, Wagner WW. Pulmonary capillaries are recruited during pulsatile flow. J Appl Physiol (1985). 2002 Mar; 92(3):1183-90. PMID: 11842057.
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    142. Caparrelli DJ, Shake JG, Cattaneo SM, Chang BY, Baumgartner WA, Conte JV, George P. Heterotopic abdominal heart transplantation: a pilot study. Curr Opin Cardiol. 2002 Mar; 17(2):145-51. PMID: 11981246.
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    143. Winslow RL, Helm P, Baumgartner W, Peddi S, Ratnanather T, McVeigh E, Miller MI. Imaging-based integrative models of the heart: closing the loop between experiment and simulation. Novartis Found Symp. 2002; 247:129-41; discussion 141-3, 144-50, 244-52. PMID: 12539953.
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    144. Jibodh SR, Hennebry TA, Greene PS, Baumgartner WA, Redmond JM. Factors leading to aortic valve replacement after previous cardiac surgery. Am J Cardiol. 2002 Jan 01; 89(1):88-91. PMID: 11779534.
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